MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:196.4 nTPM
HPA Brain:161.6 nTPM
GTEx:196.4 nTPM
FANTOM5:172.0 Scaled Tags Per Million
Pig:367.9 nTPM
Mouse:178.5 nTPM
Allen mouse:14.5 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 161.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 140.5
2019 Male, age 18, unknown 196.0
2828 Female, age 72, unknown 172.1
2586 Male, age 75, left hemisphere 163.3
2219 Male, age 76, both hemispheres 145.6
1827 Male, age 72, unknown 137.2
2411 Female, age 72, unknown 134.6
2666 Male, age 74, left hemisphere 129.2
1870 Female, age 42, unknown 110.9
1833 Male, age 53, unknown 110.5
1830 Male, age 51, unknown 105.1
Dorsal raphe nucleus
nTPM: 139.5
1828 Male, age 53, unknown 167.6
2298 Female, age 72, unknown 149.0
2750 Male, age 76, both hemispheres 141.0
2047 Male, age 72, unknown 135.6
2016 Female, age 72, unknown 104.4
Inferior colliculus
nTPM: 132.8
2097 Female, age 72, unknown 166.2
1890 Male, age 53, unknown 133.3
1848 Female, age 42, unknown 121.3
2849 Male, age 72, unknown 110.5
Median raphe nucleus
nTPM: 130.7
2220 Male, age 76, midline 130.7
Periaquaductal grey, anterior
nTPM: 159.7
1795 Male, age 51, unknown 172.8
2502 Female, age 75, unknown 166.0
1947 Male, age 18, unknown 140.1
Periaquaductal grey, dorsal
nTPM: 101.7
1840 Male, age 53, unknown 103.7
2464 Female, age 72, unknown 102.4
1831 Male, age 72, unknown 100.8
2850 Male, age 76, both hemispheres 99.8
Periaquaductal grey, lateral
nTPM: 121.8
2272 Male, age 74, both hemispheres 154.9
2140 Male, age 76, both hemispheres 120.1
2053 Male, age 18, unknown 90.5
Pretectal area
nTPM: 161.6
2007 Male, age 72, unknown 224.1
1817 Female, age 42, unknown 207.3
1944 Female, age 72, unknown 188.6
1816 Male, age 51, unknown 182.5
2667 Female, age 75, unknown 172.8
1815 Male, age 53, unknown 160.1
2273 Male, age 74, both hemispheres 148.3
2224 Female, age 72, unknown 132.5
2316 Male, age 76, right hemisphere 129.2
2825 Male, age 18, unknown 118.7
2407 Male, age 75, both hemispheres 114.2
Red nucleus
nTPM: 147.5
2785 Male, age 18, unknown 201.0
2503 Female, age 72, unknown 166.2
2725 Female, age 75, unknown 158.3
2227 Male, age 72, unknown 157.7
2769 Male, age 72, unknown 156.5
1821 Female, age 72, unknown 146.0
1954 Female, age 42, unknown 140.2
2588 Male, age 74, left hemisphere 136.8
1865 Male, age 51, unknown 130.7
2584 Male, age 75, left hemisphere 128.0
1904 Male, age 53, unknown 127.2
2823 Male, age 76, right hemisphere 120.9
Substantia nigra
nTPM: 158.4
1916 Female, age 42, unknown 229.7
1851 Male, age 51, unknown 195.0
1941 Male, age 53, unknown 189.9
1889 Female, age 72, unknown 175.6
2665 Male, age 74, both hemispheres 150.7
2583 Male, age 75, right hemisphere 136.8
2699 Male, age 18, unknown 134.0
2590 Female, age 75, unknown 130.2
2241 Male, age 72, unknown 130.1
2409 Female, age 72, unknown 111.5
Superior colliculus
nTPM: 136.0
1796 Male, age 53, unknown 161.8
2087 Female, age 72, unknown 158.4
2261 Male, age 18, unknown 157.8
2664 Male, age 75, both hemispheres 141.8
2587 Male, age 74, left hemisphere 132.0
2668 Female, age 75, unknown 129.3
1839 Male, age 51, unknown 127.9
1995 Male, age 72, unknown 119.5
1895 Male, age 76, right hemisphere 116.4
1913 Female, age 42, unknown 115.3
Ventral tegmental area
nTPM: 153.1
1915 Female, age 42, unknown 178.8
2218 Male, age 76, both hemispheres 178.4
2410 Female, age 72, unknown 172.7
1942 Male, age 51, unknown 147.0
2223 Female, age 72, unknown 126.6
2021 Male, age 53, unknown 114.8

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 196.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 196.4
Samples: 183

Max nTPM: 389.2
Min nTPM: 61.3
Std nTPM: 60.2
Median nTPM: 198.0
GTEX-1HBPH-0011-R2a-SM-GQ1DS 40-49 years, female 389.2
GTEX-1PPGY-0011-R2b-SM-F33YW 60-69 years, male 368.3
GTEX-1IDJH-0011-R2a-SM-GPI9D 70-79 years, male 366.1
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 347.1
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 338.6
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 336.8
GTEX-1KD4Q-0011-R2a-SM-F649I 40-49 years, male 326.3
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 301.9
GTEX-13OW7-0011-R2b-SM-H6Q8E 50-59 years, male 295.3
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 291.9
GTEX-1E1VI-0011-R2a-SM-9QEGS 50-59 years, male 291.1
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 172.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 172.0
FF:10158-103A5 76 years, female 172.0

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 367.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 272.2
Samples: 4

Max nTPM: 373.4
Min nTPM: 212.2
Sample A Female 373.4
Sample B Female 226.9
Sample C Male 276.3
Sample D Male 212.2
Midbrain
nTPM: 320.9
Samples: 4

Max nTPM: 398.3
Min nTPM: 258.8
Sample A Female 330.2
Sample B Female 258.8
Sample C Male 398.3
Sample D Male 296.4
Periaqueductal gray
nTPM: 225.7
Samples: 3

Max nTPM: 242.9
Min nTPM: 203.3
Sample B Female 230.9
Sample C Male 242.9
Sample D Male 203.3
Superior colliculi
nTPM: 367.9
Samples: 4

Max nTPM: 426.6
Min nTPM: 291.4
Sample A Female 412.3
Sample B Female 291.4
Sample C Male 426.6
Sample D Male 341.1

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 178.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 178.6
Samples: 4

Max nTPM: 213.9
Min nTPM: 152.3
Sample A Male 213.9
Sample B Male 168.1
Sample C Female 152.3
Sample D Female 179.9

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 14.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 14.5
81600110 Antisense, RP_080205_02_D02, Mouse strain C57BL/6J (56 days, male) 17.2
413792 Antisense, RP_040809_01_E02, Mouse strain C57BL/6J (56 days, male) 11.9

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