HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Low
Neuronal cells: Low
RNA expressioni
Consensus:20.5 nTPM
HPA Brain:77.6 nTPM
GTEx:20.5 nTPM
FANTOM5:67.8 Scaled Tags Per Million
Pig:14.3 nTPM
Mouse:19.9 nTPM
Allen mouse:0.3 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA021875Antibody CAB037253
Glial cells Not detectedLow
Neuronal cells MediumLow





HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi 77.6
Sample id Sample description nTPM
Hippocampus
nTPM: 76.5
1855 Male, age 76, left hemisphere 88.9
2529 Female, age 94, left hemisphere 82.1
2621 Female, age 67, right hemisphere 77.5
1898 Male, age 80, left hemisphere 75.7
1911 Female, age 85, right hemisphere 69.9
2148 Female, age 91, left hemisphere 64.7
Dentate gyrus
nTPM: 69.7
2010 Male, age 76, both hemispheres 92.0
2531 Female, age 67, both hemispheres 70.4
2530 Female, age 94, left hemisphere 70.2
2246 Female, age 85, both hemispheres 62.8
2528 Male, age 74, both hemispheres 62.5
1927 Female, age 91, both hemispheres 60.5
Entorhinal gyrus
nTPM: 65.5
2117 Female, age 91, right hemisphere 74.7
2686 Male, age 75, right hemisphere 72.9
1787 Male, age 76, left hemisphere 71.8
2764 Male, age 80, right hemisphere 60.6
1938 Female, age 85, left hemisphere 57.6
2613 Female, age 94, left hemisphere 55.3
Hippocampus, CA1
nTPM: 69.7
2045 Male, age 76, both hemispheres 99.4
1873 Female, age 85, both hemispheres 66.4
2082 Female, age 91, right hemisphere 64.1
2527 Male, age 74, both hemispheres 62.1
2749 Male, age 80, left hemisphere 56.6
Hippocampus, CA2
nTPM: 67.9
1963 Male, age 80, left hemisphere 76.4
1940 Female, age 85, left hemisphere 72.9
1892 Male, age 76, both hemispheres 68.5
2249 Male, age 74, both hemispheres 64.1
2113 Female, age 91, right hemisphere 62.8
2437 Female, age 94, left hemisphere 62.7
Hippocampus, CA3
nTPM: 77.6
2861 Female, age 67, both hemispheres 112.5
2620 Female, age 94, left hemisphere 100.1
1867 Male, age 76, both hemispheres 73.8
2436 Male, age 74, both hemispheres 66.8
1891 Female, age 85, both hemispheres 65.4
2137 Male, age 80, left hemisphere 46.8
Parahippocampal cortex
nTPM: 64.3
2018 Male, age 76, both hemispheres 95.8
2622 Female, age 67, right hemisphere 84.1
2250 Female, age 67, right hemisphere 71.5
2692 Male, age 74, both hemispheres 66.7
1990 Female, age 91, right hemisphere 59.8
1933 Female, age 85, both hemispheres 59.1
2532 Female, age 72, left hemisphere 57.6
2245 Female, age 91, both hemispheres 55.4
2693 Female, age 94, both hemispheres 48.2
1850 Male, age 80, both hemispheres 44.6
Perirhinal gyrus
nTPM: 55.4
2848 Male, age 76, right hemisphere 70.8
1841 Female, age 85, right hemisphere 57.7
1847 Female, age 91, left hemisphere 51.4
1794 Male, age 80, right hemisphere 50.4
2521 Female, age 94, right hemisphere 46.7
Subiculum
nTPM: 70.5
2042 Male, age 76, both hemispheres 97.1
2619 Male, age 74, both hemispheres 75.4
2729 Female, age 91, right hemisphere 73.5
1901 Male, age 80, both hemispheres 64.2
1977 Female, age 85, both hemispheres 56.5
2438 Female, age 94, left hemisphere 56.4

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Max subtype nTPMi 20.5
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 20.5
Samples: 197

Max nTPM: 249.9
Min nTPM: 2.7
Std nTPM: 28.2
Median nTPM: 13.7
GTEX-13NZ8-0011-R1b-SM-5KM3V 60-69 years, female 249.9
GTEX-13PDP-0011-R1a-SM-5PNX5 60-69 years, male 238.1
GTEX-12WSH-0011-R1a-SM-5GU5V 50-59 years, male 116.5
GTEX-NL3H-0011-R1a-SM-48TDJ 60-69 years, male 114.8
GTEX-1HSMO-0011-R1a-SM-CM2SV 60-69 years, male 104.9
GTEX-13NYS-0011-R1b-SM-5MR55 60-69 years, male 101.6
GTEX-ZF28-0011-R1a-SM-4WWD1 60-69 years, male 88.9
GTEX-14LZ3-0011-R1a-SM-69LP5 60-69 years, female 67.2
GTEX-NPJ8-0011-R1a-SM-33HCB 40-49 years, male 55.6
GTEX-WWYW-0011-R1A-SM-3TW8G 50-59 years, female 49.9
GTEX-139T8-0011-R1a-SM-5HL75 60-69 years, male 45.8
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 67.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 67.8
FF:10153-102I9 76 years, female 92.0
FF:10169-103B7 60 years, female 43.6

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Max subtype nTPMi 14.3
Pig sample Sample description nTPM
Subiculum
nTPM: 13.8
Samples: 4

Max nTPM: 16.8
Min nTPM: 11.3
Sample A Female 16.8
Sample B Female 11.3
Sample C Male 14.1
Sample D Male 12.9
Dorsal hippocampus
nTPM: 11.1
Samples: 4

Max nTPM: 11.9
Min nTPM: 10.2
Sample A Female 11.9
Sample B Female 10.8
Sample C Male 11.5
Sample D Male 10.2
Entorhinal cortex
nTPM: 14.3
Samples: 4

Max nTPM: 16.7
Min nTPM: 11.5
Sample A Female 16.7
Sample B Female 14.1
Sample C Male 15.0
Sample D Male 11.5
Ventral hippocampus
nTPM: 13.6
Samples: 4

Max nTPM: 18.1
Min nTPM: 11.2
Sample A Female 13.0
Sample B Female 11.2
Sample C Male 18.1
Sample D Male 12.1

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Max subtype nTPMi 19.9
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 19.9
Samples: 4

Max nTPM: 20.6
Min nTPM: 19.6
Sample A Male 19.6
Sample B Male 19.9
Sample C Female 20.6
Sample D Female 19.6
Hippocampal formation
nTPM: 19.4
Samples: 4

Max nTPM: 21.3
Min nTPM: 16.7
Sample A Male 16.7
Sample B Male 19.4
Sample C Female 21.3
Sample D Female 20.2

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max subtype Expression energyi 0.3
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 0.3
74821702 Antisense, RP_060321_02_C04, Mouse strain C57BL/6J (56 days, male) 0.3

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