A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
0.0
nTPM
Monaco:
8.9
nTPM
Schmiedel:
23.8
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
0.0
HPA sample
nTPM
NK-cell nTPM: 0.1
Samples: 6
Max nTPM: 0.4
Min nTPM: 0.0
P10809_1013
0.4
P10809_1033
0.0
P10809_1052
0.0
P10809_1071
0.0
P10809_1093
0.0
P10809_1103
0.0
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
8.9
Monaco sample
nTPM
NK-cell nTPM: 8.9
Samples: 4
Max nTPM: 14.4
Min nTPM: 5.4
RHH5316_R3683
10.0
RHH5224_R3596
5.4
RHH5253_R3625
14.4
RHH5282_R3654
5.9
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
23.8
Schmiedel sample id
TPM
NK-cell TPM: 23.8
Samples: 90
Max TPM: 48.6
Min TPM: 3.3
NK_1
48.6
NK_2
47.8
NK_3
47.0
NK_4
46.4
NK_5
46.4
NK_6
46.4
NK_7
46.2
NK_8
45.0
NK_9
43.7
NK_10
42.7
NK_11
39.8
NK_12
39.7
NK_13
38.3
NK_14
37.4
NK_15
36.3
NK_16
35.4
NK_17
35.2
NK_18
35.0
NK_19
34.0
NK_20
33.3
NK_21
33.1
NK_22
32.9
NK_23
32.4
NK_24
32.0
NK_25
31.8
NK_26
31.7
NK_27
31.6
NK_28
29.7
NK_29
29.4
NK_30
29.4
NK_31
28.9
NK_32
28.9
NK_33
27.9
NK_34
27.8
NK_35
27.5
NK_36
27.4
NK_37
27.2
NK_38
27.1
NK_39
26.9
NK_40
25.1
NK_41
24.9
NK_42
24.1
NK_43
23.7
NK_44
23.2
NK_45
22.9
NK_46
22.4
NK_47
22.3
NK_48
22.3
NK_49
21.4
NK_50
19.8
NK_51
19.6
NK_52
19.2
NK_53
18.8
NK_54
18.8
NK_55
18.4
NK_56
18.1
NK_57
18.0
NK_58
17.9
NK_59
17.7
NK_60
17.2
NK_61
15.4
NK_62
14.9
NK_63
14.7
NK_64
14.7
NK_65
14.5
NK_66
13.9
NK_67
13.2
NK_68
13.0
NK_69
12.7
NK_70
12.5
NK_71
12.5
NK_72
12.3
NK_73
11.8
NK_74
11.8
NK_75
11.5
NK_76
11.3
NK_77
10.9
NK_78
10.7
NK_79
9.9
NK_80
9.6
NK_81
9.2
NK_82
8.9
NK_83
8.8
NK_84
8.3
NK_85
6.8
NK_86
5.9
NK_87
5.2
NK_88
4.6
NK_89
4.5
NK_90
3.3
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