A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
101.8
nTPM
Monaco:
46.2
nTPM
Schmiedel:
11.5
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
101.8
HPA sample
nTPM
Classical monocyte nTPM: 95.0
Samples: 6
Max nTPM: 173.5
Min nTPM: 48.0
P10809_1003
48.0
P10809_1020
97.1
P10809_1039
173.5
P10809_1058
71.0
P10809_1080
75.2
P10809_1107
105.4
Intermediate monocyte nTPM: 101.8
Samples: 6
Max nTPM: 132.8
Min nTPM: 78.7
P10809_1004
81.2
P10809_1023
97.6
P10809_1042
106.4
P10809_1061
114.0
P10809_1081
78.7
P10809_1108
132.8
Non-classical monocyte nTPM: 94.1
Samples: 5
Max nTPM: 124.9
Min nTPM: 69.1
P10809_1005
85.5
P10809_1053
101.3
P10809_1072
69.1
P10809_1082
89.6
P10809_1109
124.9
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
46.2
Monaco sample
nTPM
Classical monocyte nTPM: 39.0
Samples: 4
Max nTPM: 55.2
Min nTPM: 29.2
RHH5313_R3680
29.2
RHH5221_R3593
34.4
RHH5250_R3622
55.2
RHH5279_R3651
37.0
Intermediate monocyte nTPM: 46.2
Samples: 4
Max nTPM: 65.4
Min nTPM: 27.4
RHH5314_R3681
65.4
RHH5222_R3594
33.9
RHH5251_R3623
27.4
RHH5280_R3652
58.0
Non-classical monocyte nTPM: 37.7
Samples: 4
Max nTPM: 48.1
Min nTPM: 28.3
RHH5315_R3682
48.1
RHH5223_R3595
28.3
RHH5252_R3624
46.0
RHH5281_R3653
28.4
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
11.5
Schmiedel sample id
TPM
Classical monocyte TPM: 9.8
Samples: 91
Max TPM: 12.9
Min TPM: 7.0
MONOCYTES_1
12.9
MONOCYTES_2
12.3
MONOCYTES_3
12.2
MONOCYTES_4
12.2
MONOCYTES_5
11.9
MONOCYTES_6
11.9
MONOCYTES_7
11.8
MONOCYTES_8
11.7
MONOCYTES_9
11.7
MONOCYTES_10
11.6
MONOCYTES_11
11.5
MONOCYTES_12
11.5
MONOCYTES_13
11.5
MONOCYTES_14
11.4
MONOCYTES_15
11.3
MONOCYTES_16
11.1
MONOCYTES_17
11.1
MONOCYTES_18
11.1
MONOCYTES_19
11.1
MONOCYTES_20
10.8
MONOCYTES_21
10.8
MONOCYTES_22
10.8
MONOCYTES_23
10.7
MONOCYTES_24
10.6
MONOCYTES_25
10.6
MONOCYTES_26
10.5
MONOCYTES_27
10.5
MONOCYTES_28
10.5
MONOCYTES_29
10.4
MONOCYTES_30
10.3
MONOCYTES_31
10.2
MONOCYTES_32
10.2
MONOCYTES_33
10.2
MONOCYTES_34
10.2
MONOCYTES_35
10.1
MONOCYTES_36
10.1
MONOCYTES_37
10.0
MONOCYTES_38
10.0
MONOCYTES_39
9.9
MONOCYTES_40
9.9
MONOCYTES_41
9.9
MONOCYTES_42
9.9
MONOCYTES_43
9.8
MONOCYTES_44
9.8
MONOCYTES_45
9.7
MONOCYTES_46
9.7
MONOCYTES_47
9.7
MONOCYTES_48
9.7
MONOCYTES_49
9.7
MONOCYTES_50
9.7
MONOCYTES_51
9.6
MONOCYTES_52
9.6
MONOCYTES_53
9.6
MONOCYTES_54
9.6
MONOCYTES_55
9.6
MONOCYTES_56
9.4
MONOCYTES_57
9.4
MONOCYTES_58
9.4
MONOCYTES_59
9.4
MONOCYTES_60
9.4
MONOCYTES_61
9.3
MONOCYTES_62
9.3
MONOCYTES_63
9.2
MONOCYTES_64
9.0
MONOCYTES_65
9.0
MONOCYTES_66
9.0
MONOCYTES_67
8.9
MONOCYTES_68
8.9
MONOCYTES_69
8.8
MONOCYTES_70
8.8
MONOCYTES_71
8.7
MONOCYTES_72
8.7
MONOCYTES_73
8.7
MONOCYTES_74
8.6
MONOCYTES_75
8.5
MONOCYTES_76
8.4
MONOCYTES_77
8.4
MONOCYTES_78
8.4
MONOCYTES_79
8.4
MONOCYTES_80
8.3
MONOCYTES_81
8.3
MONOCYTES_82
8.3
MONOCYTES_83
8.0
MONOCYTES_84
7.9
MONOCYTES_85
7.9
MONOCYTES_86
7.9
MONOCYTES_87
7.8
MONOCYTES_88
7.7
MONOCYTES_89
7.4
MONOCYTES_90
7.2
MONOCYTES_91
7.0
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Non-classical monocyte TPM: 11.5
Samples: 90
Max TPM: 16.5
Min TPM: 8.1
M2_1
16.5
M2_2
15.2
M2_3
14.4
M2_4
14.4
M2_5
13.9
M2_6
13.9
M2_7
13.7
M2_8
13.6
M2_9
13.6
M2_10
13.5
M2_11
13.5
M2_12
13.4
M2_13
13.3
M2_14
13.2
M2_15
13.2
M2_16
13.2
M2_17
13.0
M2_18
13.0
M2_19
13.0
M2_20
12.9
M2_21
12.6
M2_22
12.6
M2_23
12.5
M2_24
12.5
M2_25
12.4
M2_26
12.3
M2_27
12.3
M2_28
12.3
M2_29
12.3
M2_30
12.2
M2_31
12.1
M2_32
12.1
M2_33
12.0
M2_34
12.0
M2_35
11.9
M2_36
11.8
M2_37
11.8
M2_38
11.8
M2_39
11.7
M2_40
11.7
M2_41
11.7
M2_42
11.6
M2_43
11.6
M2_44
11.5
M2_45
11.5
M2_46
11.3
M2_47
11.3
M2_48
11.2
M2_49
11.2
M2_50
11.2
M2_51
11.2
M2_52
11.2
M2_53
11.1
M2_54
11.1
M2_55
11.1
M2_56
11.0
M2_57
10.9
M2_58
10.8
M2_59
10.8
M2_60
10.8
M2_61
10.8
M2_62
10.7
M2_63
10.7
M2_64
10.6
M2_65
10.6
M2_66
10.6
M2_67
10.5
M2_68
10.5
M2_69
10.4
M2_70
10.4
M2_71
10.3
M2_72
10.3
M2_73
10.3
M2_74
10.1
M2_75
10.1
M2_76
10.1
M2_77
9.6
M2_78
9.5
M2_79
9.5
M2_80
9.4
M2_81
9.3
M2_82
9.2
M2_83
9.2
M2_84
9.1
M2_85
9.1
M2_86
9.0
M2_87
9.0
M2_88
8.7
M2_89
8.2
M2_90
8.1
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