A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
78.4
nTPM
Monaco:
85.8
nTPM
Schmiedel:
81.0
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
78.4
HPA sample
nTPM
Classical monocyte nTPM: 43.9
Samples: 6
Max nTPM: 56.5
Min nTPM: 35.2
P10809_1003
43.6
P10809_1020
44.4
P10809_1039
56.5
P10809_1058
40.9
P10809_1080
35.2
P10809_1107
42.5
Intermediate monocyte nTPM: 61.7
Samples: 6
Max nTPM: 84.3
Min nTPM: 41.4
P10809_1004
60.5
P10809_1023
84.3
P10809_1042
67.2
P10809_1061
55.2
P10809_1081
41.4
P10809_1108
61.5
Non-classical monocyte nTPM: 78.3
Samples: 5
Max nTPM: 89.3
Min nTPM: 62.9
P10809_1005
80.5
P10809_1053
78.2
P10809_1072
89.3
P10809_1082
62.9
P10809_1109
80.8
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
85.8
Monaco sample
nTPM
Classical monocyte nTPM: 63.3
Samples: 4
Max nTPM: 68.1
Min nTPM: 55.1
RHH5313_R3680
55.1
RHH5221_R3593
64.8
RHH5250_R3622
65.2
RHH5279_R3651
68.1
Intermediate monocyte nTPM: 85.7
Samples: 4
Max nTPM: 109.3
Min nTPM: 53.4
RHH5314_R3681
82.3
RHH5222_R3594
109.3
RHH5251_R3623
53.4
RHH5280_R3652
97.7
Non-classical monocyte nTPM: 85.8
Samples: 4
Max nTPM: 97.6
Min nTPM: 74.9
RHH5315_R3682
82.2
RHH5223_R3595
88.5
RHH5252_R3624
74.9
RHH5281_R3653
97.6
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
81.0
Schmiedel sample id
TPM
Classical monocyte TPM: 41.3
Samples: 91
Max TPM: 60.0
Min TPM: 27.0
MONOCYTES_1
60.0
MONOCYTES_2
59.1
MONOCYTES_3
57.8
MONOCYTES_4
55.4
MONOCYTES_5
53.9
MONOCYTES_6
53.3
MONOCYTES_7
51.2
MONOCYTES_8
51.1
MONOCYTES_9
50.4
MONOCYTES_10
50.0
MONOCYTES_11
49.0
MONOCYTES_12
48.3
MONOCYTES_13
48.2
MONOCYTES_14
47.9
MONOCYTES_15
46.7
MONOCYTES_16
46.3
MONOCYTES_17
45.7
MONOCYTES_18
45.6
MONOCYTES_19
45.5
MONOCYTES_20
45.4
MONOCYTES_21
45.4
MONOCYTES_22
44.9
MONOCYTES_23
44.6
MONOCYTES_24
44.5
MONOCYTES_25
44.4
MONOCYTES_26
43.8
MONOCYTES_27
43.7
MONOCYTES_28
43.7
MONOCYTES_29
43.5
MONOCYTES_30
43.3
MONOCYTES_31
43.3
MONOCYTES_32
43.2
MONOCYTES_33
43.1
MONOCYTES_34
42.9
MONOCYTES_35
42.1
MONOCYTES_36
41.5
MONOCYTES_37
41.4
MONOCYTES_38
41.2
MONOCYTES_39
41.2
MONOCYTES_40
41.1
MONOCYTES_41
41.0
MONOCYTES_42
41.0
MONOCYTES_43
40.8
MONOCYTES_44
40.6
MONOCYTES_45
40.6
MONOCYTES_46
40.5
MONOCYTES_47
40.5
MONOCYTES_48
40.4
MONOCYTES_49
40.3
MONOCYTES_50
40.2
MONOCYTES_51
40.1
MONOCYTES_52
40.1
MONOCYTES_53
40.0
MONOCYTES_54
39.9
MONOCYTES_55
39.9
MONOCYTES_56
39.8
MONOCYTES_57
39.8
MONOCYTES_58
39.6
MONOCYTES_59
38.9
MONOCYTES_60
38.7
MONOCYTES_61
38.7
MONOCYTES_62
38.6
MONOCYTES_63
38.6
MONOCYTES_64
38.3
MONOCYTES_65
38.3
MONOCYTES_66
38.0
MONOCYTES_67
37.6
MONOCYTES_68
37.1
MONOCYTES_69
36.7
MONOCYTES_70
36.6
MONOCYTES_71
36.5
MONOCYTES_72
36.2
MONOCYTES_73
36.1
MONOCYTES_74
35.7
MONOCYTES_75
35.5
MONOCYTES_76
35.5
MONOCYTES_77
35.2
MONOCYTES_78
35.0
MONOCYTES_79
33.9
MONOCYTES_80
33.8
MONOCYTES_81
33.4
MONOCYTES_82
33.4
MONOCYTES_83
33.3
MONOCYTES_84
33.1
MONOCYTES_85
33.0
MONOCYTES_86
31.5
MONOCYTES_87
31.5
MONOCYTES_88
31.4
MONOCYTES_89
30.8
MONOCYTES_90
29.1
MONOCYTES_91
27.0
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Non-classical monocyte TPM: 81.0
Samples: 90
Max TPM: 123.6
Min TPM: 53.6
M2_1
123.6
M2_2
115.8
M2_3
110.3
M2_4
106.6
M2_5
104.2
M2_6
102.2
M2_7
100.5
M2_8
98.8
M2_9
97.9
M2_10
97.8
M2_11
95.8
M2_12
94.5
M2_13
94.4
M2_14
94.4
M2_15
93.1
M2_16
92.7
M2_17
91.9
M2_18
90.4
M2_19
89.4
M2_20
88.1
M2_21
88.0
M2_22
87.6
M2_23
87.2
M2_24
87.1
M2_25
87.1
M2_26
86.8
M2_27
86.5
M2_28
86.2
M2_29
86.1
M2_30
86.0
M2_31
85.9
M2_32
85.9
M2_33
85.5
M2_34
84.2
M2_35
83.9
M2_36
83.6
M2_37
83.0
M2_38
82.9
M2_39
82.4
M2_40
82.4
M2_41
81.8
M2_42
81.6
M2_43
80.9
M2_44
80.7
M2_45
79.9
M2_46
79.9
M2_47
79.3
M2_48
78.8
M2_49
78.7
M2_50
77.8
M2_51
77.7
M2_52
77.6
M2_53
77.6
M2_54
76.8
M2_55
76.5
M2_56
76.1
M2_57
75.6
M2_58
75.1
M2_59
74.7
M2_60
74.6
M2_61
74.0
M2_62
73.5
M2_63
73.2
M2_64
72.3
M2_65
71.9
M2_66
71.7
M2_67
71.0
M2_68
70.8
M2_69
70.2
M2_70
70.1
M2_71
69.6
M2_72
69.0
M2_73
68.9
M2_74
68.7
M2_75
68.6
M2_76
68.5
M2_77
67.7
M2_78
67.6
M2_79
67.2
M2_80
67.1
M2_81
66.7
M2_82
66.1
M2_83
66.1
M2_84
65.8
M2_85
65.8
M2_86
64.0
M2_87
64.0
M2_88
64.0
M2_89
55.6
M2_90
53.6
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