A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
0.5
nTPM
Monaco:
170.0
nTPM
Schmiedel:
177.6
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
0.5
HPA sample
nTPM
Classical monocyte nTPM: 0.5
Samples: 6
Max nTPM: 0.8
Min nTPM: 0.2
P10809_1003
0.5
P10809_1020
0.3
P10809_1039
0.2
P10809_1058
0.6
P10809_1080
0.8
P10809_1107
0.3
Intermediate monocyte nTPM: 0.3
Samples: 6
Max nTPM: 1.3
Min nTPM: 0.0
P10809_1004
0.0
P10809_1023
0.0
P10809_1042
1.3
P10809_1061
0.0
P10809_1081
0.5
P10809_1108
0.0
Non-classical monocyte nTPM: 0.1
Samples: 5
Max nTPM: 0.3
Min nTPM: 0.0
P10809_1005
0.3
P10809_1053
0.0
P10809_1072
0.0
P10809_1082
0.0
P10809_1109
0.1
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
170.0
Monaco sample
nTPM
Classical monocyte nTPM: 170.0
Samples: 4
Max nTPM: 452.6
Min nTPM: 66.4
RHH5313_R3680
66.4
RHH5221_R3593
452.6
RHH5250_R3622
87.2
RHH5279_R3651
73.7
Intermediate monocyte nTPM: 33.9
Samples: 4
Max nTPM: 72.6
Min nTPM: 16.6
RHH5314_R3681
29.5
RHH5222_R3594
72.6
RHH5251_R3623
16.7
RHH5280_R3652
16.6
Non-classical monocyte nTPM: 20.9
Samples: 4
Max nTPM: 32.7
Min nTPM: 12.5
RHH5315_R3682
12.5
RHH5223_R3595
32.7
RHH5252_R3624
22.3
RHH5281_R3653
15.9
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
177.6
Schmiedel sample id
TPM
Classical monocyte TPM: 177.6
Samples: 91
Max TPM: 450.8
Min TPM: 65.7
MONOCYTES_1
450.8
MONOCYTES_2
390.8
MONOCYTES_3
329.6
MONOCYTES_4
316.8
MONOCYTES_5
315.7
MONOCYTES_6
310.1
MONOCYTES_7
303.9
MONOCYTES_8
301.1
MONOCYTES_9
299.2
MONOCYTES_10
294.9
MONOCYTES_11
292.4
MONOCYTES_12
274.0
MONOCYTES_13
272.4
MONOCYTES_14
257.9
MONOCYTES_15
255.9
MONOCYTES_16
248.5
MONOCYTES_17
245.8
MONOCYTES_18
245.5
MONOCYTES_19
245.3
MONOCYTES_20
245.1
MONOCYTES_21
244.2
MONOCYTES_22
237.8
MONOCYTES_23
236.8
MONOCYTES_24
234.9
MONOCYTES_25
233.1
MONOCYTES_26
227.6
MONOCYTES_27
224.5
MONOCYTES_28
217.9
MONOCYTES_29
217.3
MONOCYTES_30
212.1
MONOCYTES_31
210.3
MONOCYTES_32
208.9
MONOCYTES_33
204.1
MONOCYTES_34
198.8
MONOCYTES_35
189.5
MONOCYTES_36
188.3
MONOCYTES_37
186.2
MONOCYTES_38
185.7
MONOCYTES_39
184.1
MONOCYTES_40
183.5
MONOCYTES_41
181.9
MONOCYTES_42
180.3
MONOCYTES_43
176.9
MONOCYTES_44
163.8
MONOCYTES_45
163.1
MONOCYTES_46
162.0
MONOCYTES_47
160.8
MONOCYTES_48
157.1
MONOCYTES_49
155.9
MONOCYTES_50
155.3
MONOCYTES_51
154.9
MONOCYTES_52
154.0
MONOCYTES_53
149.2
MONOCYTES_54
147.7
MONOCYTES_55
145.1
MONOCYTES_56
139.0
MONOCYTES_57
138.9
MONOCYTES_58
136.7
MONOCYTES_59
136.4
MONOCYTES_60
132.4
MONOCYTES_61
128.5
MONOCYTES_62
125.0
MONOCYTES_63
122.8
MONOCYTES_64
119.8
MONOCYTES_65
114.1
MONOCYTES_66
113.9
MONOCYTES_67
113.0
MONOCYTES_68
108.7
MONOCYTES_69
108.2
MONOCYTES_70
107.9
MONOCYTES_71
102.0
MONOCYTES_72
97.8
MONOCYTES_73
96.7
MONOCYTES_74
96.2
MONOCYTES_75
95.2
MONOCYTES_76
93.9
MONOCYTES_77
93.7
MONOCYTES_78
93.0
MONOCYTES_79
93.0
MONOCYTES_80
90.7
MONOCYTES_81
85.3
MONOCYTES_82
82.9
MONOCYTES_83
80.2
MONOCYTES_84
80.0
MONOCYTES_85
78.6
MONOCYTES_86
75.5
MONOCYTES_87
75.0
MONOCYTES_88
74.0
MONOCYTES_89
72.3
MONOCYTES_90
66.5
MONOCYTES_91
65.7
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Non-classical monocyte TPM: 1.4
Samples: 90
Max TPM: 8.9
Min TPM: 0.1
M2_1
8.9
M2_2
8.1
M2_3
7.6
M2_4
7.1
M2_5
6.1
M2_6
4.2
M2_7
3.7
M2_8
3.4
M2_9
3.1
M2_10
2.8
M2_11
2.6
M2_12
2.3
M2_13
2.2
M2_14
2.1
M2_15
1.8
M2_16
1.8
M2_17
1.8
M2_18
1.7
M2_19
1.7
M2_20
1.7
M2_21
1.6
M2_22
1.6
M2_23
1.5
M2_24
1.5
M2_25
1.5
M2_26
1.5
M2_27
1.4
M2_28
1.4
M2_29
1.4
M2_30
1.3
M2_31
1.3
M2_32
1.3
M2_33
1.3
M2_34
1.2
M2_35
1.2
M2_36
1.2
M2_37
1.2
M2_38
1.1
M2_39
1.1
M2_40
1.1
M2_41
1.0
M2_42
1.0
M2_43
1.0
M2_44
1.0
M2_45
0.9
M2_46
0.9
M2_47
0.9
M2_48
0.9
M2_49
0.9
M2_50
0.9
M2_51
0.8
M2_52
0.8
M2_53
0.7
M2_54
0.7
M2_55
0.7
M2_56
0.7
M2_57
0.6
M2_58
0.6
M2_59
0.6
M2_60
0.6
M2_61
0.5
M2_62
0.5
M2_63
0.5
M2_64
0.4
M2_65
0.4
M2_66
0.4
M2_67
0.4
M2_68
0.4
M2_69
0.3
M2_70
0.3
M2_71
0.3
M2_72
0.3
M2_73
0.3
M2_74
0.3
M2_75
0.3
M2_76
0.2
M2_77
0.2
M2_78
0.2
M2_79
0.2
M2_80
0.2
M2_81
0.2
M2_82
0.2
M2_83
0.2
M2_84
0.2
M2_85
0.2
M2_86
0.2
M2_87
0.2
M2_88
0.1
M2_89
0.1
M2_90
0.1
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