A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
13.0
nTPM
Monaco:
70.3
nTPM
Schmiedel:
114.6
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
13.0
HPA sample
nTPM
Classical monocyte nTPM: 9.0
Samples: 6
Max nTPM: 14.3
Min nTPM: 6.4
P10809_1003
14.3
P10809_1020
7.8
P10809_1039
6.4
P10809_1058
8.3
P10809_1080
7.1
P10809_1107
9.8
Intermediate monocyte nTPM: 9.9
Samples: 6
Max nTPM: 13.1
Min nTPM: 7.6
P10809_1004
12.3
P10809_1023
7.6
P10809_1042
9.0
P10809_1061
13.1
P10809_1081
7.9
P10809_1108
9.2
Non-classical monocyte nTPM: 13.0
Samples: 5
Max nTPM: 19.3
Min nTPM: 5.7
P10809_1005
16.2
P10809_1053
14.7
P10809_1072
19.3
P10809_1082
5.7
P10809_1109
9.3
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
70.3
Monaco sample
nTPM
Classical monocyte nTPM: 59.8
Samples: 4
Max nTPM: 66.6
Min nTPM: 48.5
RHH5313_R3680
48.5
RHH5221_R3593
66.6
RHH5250_R3622
64.0
RHH5279_R3651
59.9
Intermediate monocyte nTPM: 56.0
Samples: 4
Max nTPM: 75.9
Min nTPM: 40.9
RHH5314_R3681
40.9
RHH5222_R3594
75.9
RHH5251_R3623
59.5
RHH5280_R3652
47.5
Non-classical monocyte nTPM: 70.3
Samples: 4
Max nTPM: 92.1
Min nTPM: 54.4
RHH5315_R3682
54.4
RHH5223_R3595
92.1
RHH5252_R3624
69.7
RHH5281_R3653
65.1
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
114.6
Schmiedel sample id
TPM
Classical monocyte TPM: 101.0
Samples: 91
Max TPM: 120.9
Min TPM: 69.4
MONOCYTES_1
120.9
MONOCYTES_2
118.1
MONOCYTES_3
116.2
MONOCYTES_4
115.2
MONOCYTES_5
113.3
MONOCYTES_6
113.2
MONOCYTES_7
112.8
MONOCYTES_8
112.4
MONOCYTES_9
112.1
MONOCYTES_10
111.9
MONOCYTES_11
111.7
MONOCYTES_12
111.6
MONOCYTES_13
110.9
MONOCYTES_14
110.7
MONOCYTES_15
110.5
MONOCYTES_16
109.6
MONOCYTES_17
109.2
MONOCYTES_18
108.5
MONOCYTES_19
108.2
MONOCYTES_20
107.8
MONOCYTES_21
107.8
MONOCYTES_22
107.6
MONOCYTES_23
107.2
MONOCYTES_24
107.0
MONOCYTES_25
106.8
MONOCYTES_26
106.5
MONOCYTES_27
106.4
MONOCYTES_28
106.3
MONOCYTES_29
106.2
MONOCYTES_30
106.2
MONOCYTES_31
106.1
MONOCYTES_32
106.1
MONOCYTES_33
105.7
MONOCYTES_34
104.8
MONOCYTES_35
104.0
MONOCYTES_36
103.9
MONOCYTES_37
103.8
MONOCYTES_38
103.8
MONOCYTES_39
103.7
MONOCYTES_40
103.7
MONOCYTES_41
103.7
MONOCYTES_42
103.4
MONOCYTES_43
102.5
MONOCYTES_44
102.2
MONOCYTES_45
102.1
MONOCYTES_46
101.9
MONOCYTES_47
101.3
MONOCYTES_48
100.8
MONOCYTES_49
100.7
MONOCYTES_50
100.4
MONOCYTES_51
100.1
MONOCYTES_52
100.0
MONOCYTES_53
99.9
MONOCYTES_54
99.7
MONOCYTES_55
99.4
MONOCYTES_56
99.0
MONOCYTES_57
98.8
MONOCYTES_58
98.7
MONOCYTES_59
98.6
MONOCYTES_60
98.5
MONOCYTES_61
98.2
MONOCYTES_62
97.8
MONOCYTES_63
97.4
MONOCYTES_64
97.3
MONOCYTES_65
96.6
MONOCYTES_66
96.4
MONOCYTES_67
96.1
MONOCYTES_68
95.8
MONOCYTES_69
94.9
MONOCYTES_70
94.8
MONOCYTES_71
94.3
MONOCYTES_72
93.5
MONOCYTES_73
92.7
MONOCYTES_74
92.5
MONOCYTES_75
92.4
MONOCYTES_76
92.3
MONOCYTES_77
92.1
MONOCYTES_78
90.4
MONOCYTES_79
90.3
MONOCYTES_80
89.6
MONOCYTES_81
89.4
MONOCYTES_82
88.8
MONOCYTES_83
88.8
MONOCYTES_84
88.6
MONOCYTES_85
86.8
MONOCYTES_86
85.9
MONOCYTES_87
85.3
MONOCYTES_88
84.9
MONOCYTES_89
83.8
MONOCYTES_90
82.4
MONOCYTES_91
69.4
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Non-classical monocyte TPM: 114.6
Samples: 90
Max TPM: 136.5
Min TPM: 85.2
M2_1
136.5
M2_2
131.8
M2_3
130.9
M2_4
129.8
M2_5
129.1
M2_6
128.7
M2_7
127.2
M2_8
127.0
M2_9
126.9
M2_10
126.5
M2_11
125.8
M2_12
125.6
M2_13
125.3
M2_14
125.2
M2_15
124.9
M2_16
124.8
M2_17
124.6
M2_18
124.5
M2_19
124.1
M2_20
123.2
M2_21
122.6
M2_22
122.3
M2_23
122.2
M2_24
121.9
M2_25
121.8
M2_26
121.3
M2_27
120.3
M2_28
120.2
M2_29
119.4
M2_30
119.3
M2_31
119.2
M2_32
119.2
M2_33
118.9
M2_34
118.8
M2_35
118.6
M2_36
117.5
M2_37
117.0
M2_38
116.7
M2_39
116.0
M2_40
116.0
M2_41
115.9
M2_42
115.8
M2_43
115.7
M2_44
115.3
M2_45
115.1
M2_46
115.1
M2_47
114.7
M2_48
114.2
M2_49
114.0
M2_50
113.9
M2_51
113.7
M2_52
113.3
M2_53
113.2
M2_54
113.2
M2_55
112.9
M2_56
112.8
M2_57
112.6
M2_58
112.3
M2_59
112.3
M2_60
112.0
M2_61
110.7
M2_62
110.5
M2_63
110.0
M2_64
109.7
M2_65
109.2
M2_66
109.1
M2_67
108.9
M2_68
108.4
M2_69
108.3
M2_70
107.6
M2_71
107.1
M2_72
106.7
M2_73
105.9
M2_74
105.9
M2_75
105.8
M2_76
104.9
M2_77
104.7
M2_78
104.0
M2_79
103.3
M2_80
103.1
M2_81
102.9
M2_82
101.1
M2_83
100.7
M2_84
100.3
M2_85
100.0
M2_86
98.9
M2_87
93.8
M2_88
91.3
M2_89
89.7
M2_90
85.2
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