BETA
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:694.6 nTPM
HPA Brain:377.6 nTPM
GTEx:694.6 nTPM
FANTOM5:277.5 Scaled Tags Per Million
Macaque:4.9 nTPM
Mouse:16.6 nTPM
Rat:50.5 nTPM
Pig:933.7 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 377.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 256.1
2019 Male, age 18, unknown 391.0
2828 Female, age 72, unknown 308.1
2411 Female, age 72, unknown 304.1
1827 Male, age 72, unknown 282.2
1870 Female, age 42, unknown 258.5
2666 Male, age 74, left hemisphere 240.0
1830 Male, age 51, unknown 235.4
2219 Male, age 76, both hemispheres 190.8
1833 Male, age 53, unknown 186.8
2586 Male, age 75, left hemisphere 164.2
Dorsal raphe nucleus
nTPM: 326.4
2750 Male, age 76, both hemispheres 446.2
1828 Male, age 53, unknown 357.9
2298 Female, age 72, unknown 321.6
2047 Male, age 72, unknown 317.1
2016 Female, age 72, unknown 189.2
Inferior colliculus
nTPM: 133.0
1848 Female, age 42, unknown 161.4
2097 Female, age 72, unknown 152.1
1890 Male, age 53, unknown 128.5
2849 Male, age 72, unknown 90.0
Median raphe nucleus
nTPM: 377.6
2220 Male, age 76, midline 377.6
Periaquaductal grey, anterior
nTPM: 351.2
1795 Male, age 51, unknown 424.2
1947 Male, age 18, unknown 376.2
2502 Female, age 75, unknown 253.1
Periaquaductal grey, dorsal
nTPM: 150.3
1831 Male, age 72, unknown 174.4
2850 Male, age 76, both hemispheres 171.9
2464 Female, age 72, unknown 154.2
1840 Male, age 53, unknown 100.6
Periaquaductal grey, lateral
nTPM: 212.5
2272 Male, age 74, both hemispheres 272.1
2053 Male, age 18, unknown 186.6
2140 Male, age 76, both hemispheres 178.8
Pretectal area
nTPM: 298.0
2007 Male, age 72, unknown 499.1
1817 Female, age 42, unknown 397.9
1816 Male, age 51, unknown 359.2
2273 Male, age 74, both hemispheres 337.0
1944 Female, age 72, unknown 335.4
1815 Male, age 53, unknown 290.5
2224 Female, age 72, unknown 254.2
2667 Female, age 75, unknown 243.6
2825 Male, age 18, unknown 204.5
2407 Male, age 75, both hemispheres 185.5
2316 Male, age 76, right hemisphere 170.9
Red nucleus
nTPM: 295.5
2785 Male, age 18, unknown 362.2
2823 Male, age 76, right hemisphere 329.1
1821 Female, age 72, unknown 323.6
1865 Male, age 51, unknown 318.4
2725 Female, age 75, unknown 299.3
2503 Female, age 72, unknown 296.8
2769 Male, age 72, unknown 288.4
1954 Female, age 42, unknown 285.3
2227 Male, age 72, unknown 277.5
2588 Male, age 74, left hemisphere 272.5
1904 Male, age 53, unknown 259.2
2584 Male, age 75, left hemisphere 233.8
Substantia nigra
nTPM: 269.6
1941 Male, age 53, unknown 477.0
1889 Female, age 72, unknown 347.1
1851 Male, age 51, unknown 328.5
1916 Female, age 42, unknown 293.0
2590 Female, age 75, unknown 285.4
2409 Female, age 72, unknown 206.8
2583 Male, age 75, right hemisphere 205.7
2665 Male, age 74, both hemispheres 203.9
2241 Male, age 72, unknown 198.2
2699 Male, age 18, unknown 150.1
Superior colliculus
nTPM: 238.6
2668 Female, age 75, unknown 320.7
2587 Male, age 74, left hemisphere 304.2
2261 Male, age 18, unknown 286.3
2087 Female, age 72, unknown 269.7
1796 Male, age 53, unknown 257.9
1913 Female, age 42, unknown 239.3
1995 Male, age 72, unknown 193.1
2664 Male, age 75, both hemispheres 190.2
1839 Male, age 51, unknown 162.0
1895 Male, age 76, right hemisphere 161.9
Ventral tegmental area
nTPM: 295.2
2223 Female, age 72, unknown 415.1
2410 Female, age 72, unknown 328.9
2218 Male, age 76, both hemispheres 315.0
2021 Male, age 53, unknown 262.4
1915 Female, age 42, unknown 251.8
1942 Male, age 51, unknown 197.9

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 694.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 694.6
Samples: 183

Max nTPM: 1551.7
Min nTPM: 205.2
Std nTPM: 241.3
Median nTPM: 658.0
GTEX-1CB4J-0011-R2a-SM-9WG5N 60-69 years, male 1551.7
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 1468.1
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 1418.4
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 1362.3
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 1282.4
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 1262.0
GTEX-RN5K-0011-R2A-SM-GQ1CA 50-59 years, female 1236.3
GTEX-15G19-0011-R2b-SM-H6Q7S 60-69 years, male 1235.9
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 1231.8
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 1229.4
GTEX-ZAJG-0011-R2a-SM-GNTAX 50-59 years, female 1195.4
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 277.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 277.5
FF:10158-103A5 76 years, female 277.5

MIDBRAIN - Macaque RNA-seq
Max subtype nTPMi 4.9
Macaque sample Sample description nTPM
Substantia nigra
nTPM: 3.4
Samples: 1

Max nTPM: 3.4
Min nTPM: 3.4
Sample A 3.4
Midbrain
nTPM: 4.9
Samples: 1

Max nTPM: 4.9
Min nTPM: 4.9
Sample A 4.9
Superior colliculi
nTPM: 1.6
Samples: 1

Max nTPM: 1.6
Min nTPM: 1.6
Sample A 1.6

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 933.7
Pig sample Sample description nTPM
Substantia nigra
nTPM: 933.7
Samples: 3

Max nTPM: 1170.1
Min nTPM: 713.4
Sample A Female 1170.1
Sample B Female 917.5
Sample C Male 713.4
Midbrain
nTPM: 311.9
Samples: 3

Max nTPM: 462.7
Min nTPM: 164.8
Sample B Female 462.7
Sample C Male 308.2
Sample D Male 164.8
Periaqueductal gray
nTPM: 340.6
Samples: 3

Max nTPM: 398.2
Min nTPM: 258.1
Sample B Female 258.1
Sample C Male 398.2
Sample D Male 365.6
Superior colliculi
nTPM: 395.3
Samples: 4

Max nTPM: 567.8
Min nTPM: 300.2
Sample A Female 322.2
Sample B Female 567.8
Sample C Male 390.8
Sample D Male 300.2

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 16.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 16.6
Samples: 4

Max nTPM: 18.5
Min nTPM: 15.5
Sample A 18.5
Sample B 16.9
Sample C 15.6
Sample D 15.5

MIDBRAIN - Rat RNA-seq
Max subtype nTPMi 50.5
Rat sample Sample description nTPM
Midbrain
nTPM: 50.5
Samples: 4

Max nTPM: 55.1
Min nTPM: 45.1
Sample A 53.4
Sample A 45.1
Sample A 55.1
Sample A 48.4

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