Evolutionary view of SNU13 across human, pig, rat, mouse and macaque - Staining in retina

RETINA - Expression summary

Protein expressionⁱ

No data

RNA expressionⁱ

Consensus:	79.3	nTPM
GTEx:	79.3	nTPM
FANTOM5:	108.2	Scaled Tags Per Million

Macaque:	108.7	nTPM
Mouse:	31.7	nTPM
Rat:	53.9	nTPM
Pig:	0.1	nTPM

EYE - SINGLE CELL RNA EXPRESSION
Explore single cell type data

RETINA - GTEx RNA-seqⁱ

Max subtype nTPMⁱ Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.	79.3

GTEx sample id

Sample description

nTPM

Retina
Average nTPM: 79.3

Samples: 105

Max nTPM: 110.4
Min nTPM: 30.3
Std nTPM: 16.3
Median nTPM:

377_1	82 years, female	110.4
386_1	76 years, male	107.4
177_1	74 years, male	104.9
322_1	76 years, male	102.2
379_1	60 years, male	101.2
172_1	72 years, female	99.9
452_1	88 years, female	99.3
189_1	76 years, male	99.1
319_1	81 years, male	99.0
356_1	87 years, female	98.8
404_1	82 years, female	98.2
153_1	70 years, female	97.0
376_1	75 years, female	95.7
347_1	72 years, male	94.3
163_1	78 years, male	93.7
17_1	71 years, male	93.6
115_1	83 years, male	93.6
321_1	62 years, female	93.4
506_1	65 years, male	93.4
173_1	67 years, male	93.2
6_1	73 years, female	93.1
243_1	75 years, male	93.1
246_1	77 years, male	93.1
349_1	83 years, male	93.0
355_1	70 years, female	92.2
2_1	77 years, female	91.8
394_1	75 years, female	91.5
99_1	64 years, male	90.7
292_1	71 years, male	90.4
286_1	68 years, female	90.1
406_1	79 years, male	89.6
335_1	73 years, female	89.5
384_1	83 years, male	89.2
218_1	71 years, female	89.1
425_1	59 years, female	88.2
120_1	70 years, female	87.8
353_1	82 years, female	87.0
145_1	84 years, male	86.8
351_1	91 years, male	86.8
354_1	81 years, female	86.8
318_1	68 years, male	86.0
35_1	74 years, female	85.8
352_1	62 years, male	85.8
350_1	84 years, female	85.0
265_1	87 years, male	84.6
293_1	68 years, female	84.1
447_1	81 years, male	84.1
517_1	88 years, male	84.1
320_1	89 years, female	83.8
4_1	88 years, female	83.5
405_1	91 years, male	83.5
526_1	61 years, male	83.5
229_1	69 years, female	83.4
9_1	66 years, female	82.7
316_1	62 years, male	81.8
375_1	74 years, female	81.5
18_1	88 years, male	81.3
109_1	81 years, female	81.1
503_1	68 years, male	80.6
295_1	61 years, female	80.1
41_1	94 years, female	79.3
237_1	82 years, male	79.3
126_1	63 years, male	78.9
251_1	78 years, male	78.2
317_1	60 years, male	77.5
264_1	73 years, female	77.4
266_1	85 years, male	77.3
389_1	86 years, female	77.3
42_1	85 years, male	77.2
291_1	76 years, male	77.1
480_1	63 years, male	75.5
254_1	77 years, female	74.4
396_1	62 years, male	74.0
139_1	64 years, female	73.9
324_1	76 years, male	73.0
348_1	84 years, male	72.9
142_1	61 years, female	72.5
137_1	83 years, male	71.1
311_1	78 years, male	69.8
518_1	75 years, female	69.6
468_1	89 years, male	68.3
288_1	66 years, female	67.5
117_1	61 years, male	67.3
162_1	79 years, female	67.1
81_1	67 years, male	66.9
499_1	55 years, female	66.1
217_1	76 years, male	64.7
313_1	79 years, female	64.7
119_1	70 years, female	63.6
314_1	67 years, male	63.4
307_1	66 years, female	57.1
32_1	67 years, male	56.9
43_1	64 years, female	55.9
315_1	62 years, female	55.3
89_1	63 years, male	55.2
308_1	70 years, female	54.4
415_1	77 years, female	53.6
414_1	84 years, female	51.4
466_1	57 years, female	47.3
495_1	57 years, female	46.2
501_1	88 years, male	46.1
413_1	59 years, female	45.4
149_1	88 years, male	40.8
490_1	67 years, female	31.8
491_1	89 years, female	30.3
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RETINA - FANTOM5 CAGEⁱ

Max subtype Scaled Tags Per Millionⁱ Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.	108.2

FANTOM5 sample id

Sample description

Scaled Tags Per Million

Retina
Scaled Tags Per Million: 108.2

FF:10030-101E3

24-65 years, mixed

108.2

RETINA - Macaque RNA-seq

Max subtype nTPMⁱ Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.	108.7

Macaque sample

Sample description

nTPM

Retina
nTPM: 108.7

Samples: 2

Max nTPM: 133.5
Min nTPM: 83.8

Sample A		83.8
Sample B		133.5

RETINA - Pig RNA-seqⁱ

Max subtype nTPMⁱ Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.	0.1

Pig sample

Sample description

nTPM

Retina
nTPM: 0.1

Samples: 4

Max nTPM: 0.2
Min nTPM: 0.0

Sample A	Female	0.1
Sample B	Female	0.0
Sample C	Male	0.2
Sample D	Male	0.2

RETINA - Mouse RNA-seqⁱ

Max subtype nTPMⁱ Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.	31.7

Mouse sample

Sample description

nTPM

Retina
nTPM: 31.7

Samples: 3

Max nTPM: 35.3
Min nTPM: 28.8

Sample D		35.3
Sample B		28.8
Sample C		31.0

RETINA - Rat RNA-seq

Max subtype nTPMⁱ Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.	53.9

Rat sample

Sample description

nTPM

Retina
nTPM: 53.8

Samples: 4

Max nTPM: 55.3
Min nTPM: 52.4

Sample B		52.4
Sample A		55.3
Sample A		53.9
Sample A		53.8