BETA
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:132.2 nTPM
HPA Brain:160.6 nTPM
GTEx:132.2 nTPM
FANTOM5:619.2 Scaled Tags Per Million
Macaque:360.9 nTPM
Mouse:91.9 nTPM
Rat:105.4 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 160.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 138.4
2411 Female, age 72, unknown 159.4
1830 Male, age 51, unknown 154.0
1833 Male, age 53, unknown 153.9
1870 Female, age 42, unknown 152.3
2019 Male, age 18, unknown 141.5
1827 Male, age 72, unknown 139.4
2828 Female, age 72, unknown 138.2
2666 Male, age 74, left hemisphere 127.5
2219 Male, age 76, both hemispheres 115.8
2586 Male, age 75, left hemisphere 101.8
Dorsal raphe nucleus
nTPM: 140.4
2750 Male, age 76, both hemispheres 154.6
2016 Female, age 72, unknown 149.9
1828 Male, age 53, unknown 133.6
2298 Female, age 72, unknown 133.6
2047 Male, age 72, unknown 130.0
Inferior colliculus
nTPM: 141.1
1848 Female, age 42, unknown 144.9
2849 Male, age 72, unknown 143.8
1890 Male, age 53, unknown 142.5
2097 Female, age 72, unknown 133.4
Median raphe nucleus
nTPM: 146.0
2220 Male, age 76, midline 146.0
Periaquaductal grey, anterior
nTPM: 127.8
1947 Male, age 18, unknown 141.9
1795 Male, age 51, unknown 125.0
2502 Female, age 75, unknown 116.4
Periaquaductal grey, dorsal
nTPM: 147.4
2850 Male, age 76, both hemispheres 159.7
2464 Female, age 72, unknown 145.5
1831 Male, age 72, unknown 143.3
1840 Male, age 53, unknown 141.3
Periaquaductal grey, lateral
nTPM: 160.6
2272 Male, age 74, both hemispheres 167.0
2140 Male, age 76, both hemispheres 165.0
2053 Male, age 18, unknown 149.7
Pretectal area
nTPM: 143.9
2273 Male, age 74, both hemispheres 178.7
2316 Male, age 76, right hemisphere 170.1
2667 Female, age 75, unknown 148.3
1815 Male, age 53, unknown 144.5
2224 Female, age 72, unknown 143.0
2825 Male, age 18, unknown 142.1
2407 Male, age 75, both hemispheres 140.1
2007 Male, age 72, unknown 133.8
1817 Female, age 42, unknown 130.1
1944 Female, age 72, unknown 127.6
1816 Male, age 51, unknown 124.5
Red nucleus
nTPM: 152.7
2823 Male, age 76, right hemisphere 169.0
1904 Male, age 53, unknown 164.3
1865 Male, age 51, unknown 163.5
2503 Female, age 72, unknown 159.3
1821 Female, age 72, unknown 155.6
2769 Male, age 72, unknown 155.0
2227 Male, age 72, unknown 152.8
1954 Female, age 42, unknown 152.0
2785 Male, age 18, unknown 146.5
2588 Male, age 74, left hemisphere 146.1
2725 Female, age 75, unknown 142.3
2584 Male, age 75, left hemisphere 125.6
Substantia nigra
nTPM: 133.0
2409 Female, age 72, unknown 165.0
2590 Female, age 75, unknown 143.4
2583 Male, age 75, right hemisphere 138.8
2241 Male, age 72, unknown 132.3
2699 Male, age 18, unknown 131.3
1851 Male, age 51, unknown 130.6
1889 Female, age 72, unknown 130.0
1941 Male, age 53, unknown 126.0
2665 Male, age 74, both hemispheres 119.4
1916 Female, age 42, unknown 113.2
Superior colliculus
nTPM: 142.0
1913 Female, age 42, unknown 172.2
1995 Male, age 72, unknown 157.7
1895 Male, age 76, right hemisphere 150.9
2668 Female, age 75, unknown 147.0
1839 Male, age 51, unknown 141.3
2587 Male, age 74, left hemisphere 140.6
2261 Male, age 18, unknown 138.7
2087 Female, age 72, unknown 134.2
1796 Male, age 53, unknown 127.7
2664 Male, age 75, both hemispheres 109.6
Ventral tegmental area
nTPM: 132.2
2410 Female, age 72, unknown 141.6
2021 Male, age 53, unknown 135.5
2223 Female, age 72, unknown 135.5
1942 Male, age 51, unknown 129.7
2218 Male, age 76, both hemispheres 127.4
1915 Female, age 42, unknown 123.5

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 132.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 132.2
Samples: 183

Max nTPM: 255.0
Min nTPM: 56.5
Std nTPM: 38.7
Median nTPM: 125.3
GTEX-1NV5F-0011-R2a-SM-G8LME 60-69 years, female 255.0
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 251.8
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 250.6
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 230.0
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 228.7
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 227.6
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 215.7
GTEX-ZYY3-0011-R2a-SM-GNTB2 60-69 years, female 208.9
GTEX-RN5K-0011-R2A-SM-GQ1CA 50-59 years, female 208.6
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 202.9
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 202.6
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 619.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 619.2
FF:10158-103A5 76 years, female 619.2

MIDBRAIN - Macaque RNA-seq
Max subtype nTPMi 360.9
Macaque sample Sample description nTPM
Substantia nigra
nTPM: 293.8
Samples: 1

Max nTPM: 293.8
Min nTPM: 293.8
Sample A 293.8
Midbrain
nTPM: 360.9
Samples: 1

Max nTPM: 360.9
Min nTPM: 360.9
Sample A 360.9
Superior colliculi
nTPM: 326.0
Samples: 1

Max nTPM: 326.0
Min nTPM: 326.0
Sample A 326.0

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 91.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 91.9
Samples: 4

Max nTPM: 94.0
Min nTPM: 90.6
Sample A 90.7
Sample B 90.6
Sample C 94.0
Sample D 92.2

MIDBRAIN - Rat RNA-seq
Max subtype nTPMi 105.4
Rat sample Sample description nTPM
Midbrain
nTPM: 105.4
Samples: 4

Max nTPM: 107.8
Min nTPM: 101.6
Sample A 107.3
Sample A 107.8
Sample A 101.6
Sample A 105.0

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