BETA
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:83.8 nTPM
HPA Brain:152.0 nTPM
GTEx:83.8 nTPM
FANTOM5:2.5 Scaled Tags Per Million
Macaque:106.9 nTPM
Mouse:118.3 nTPM
Pig:282.3 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 152.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 99.6
2019 Male, age 18, unknown 243.3
2219 Male, age 76, both hemispheres 159.3
2666 Male, age 74, left hemisphere 149.1
2411 Female, age 72, unknown 79.7
1827 Male, age 72, unknown 68.7
1830 Male, age 51, unknown 66.9
2828 Female, age 72, unknown 63.6
1833 Male, age 53, unknown 58.8
1870 Female, age 42, unknown 57.6
2586 Male, age 75, left hemisphere 48.6
Dorsal raphe nucleus
nTPM: 152.0
1828 Male, age 53, unknown 292.2
2047 Male, age 72, unknown 235.6
2750 Male, age 76, both hemispheres 98.0
2298 Female, age 72, unknown 92.2
2016 Female, age 72, unknown 42.0
Inferior colliculus
nTPM: 87.8
1890 Male, age 53, unknown 110.0
1848 Female, age 42, unknown 102.0
2097 Female, age 72, unknown 82.7
2849 Male, age 72, unknown 56.7
Median raphe nucleus
nTPM: 115.5
2220 Male, age 76, midline 115.5
Periaquaductal grey, anterior
nTPM: 67.9
1947 Male, age 18, unknown 79.2
1795 Male, age 51, unknown 73.0
2502 Female, age 75, unknown 51.3
Periaquaductal grey, dorsal
nTPM: 39.0
2464 Female, age 72, unknown 50.8
2850 Male, age 76, both hemispheres 40.8
1831 Male, age 72, unknown 37.6
1840 Male, age 53, unknown 26.7
Periaquaductal grey, lateral
nTPM: 32.7
2272 Male, age 74, both hemispheres 52.2
2140 Male, age 76, both hemispheres 23.7
2053 Male, age 18, unknown 22.3
Pretectal area
nTPM: 100.2
1817 Female, age 42, unknown 235.3
2007 Male, age 72, unknown 200.7
1944 Female, age 72, unknown 173.0
2667 Female, age 75, unknown 110.4
1816 Male, age 51, unknown 110.1
1815 Male, age 53, unknown 90.7
2224 Female, age 72, unknown 44.4
2825 Male, age 18, unknown 40.9
2407 Male, age 75, both hemispheres 38.0
2273 Male, age 74, both hemispheres 32.3
2316 Male, age 76, right hemisphere 26.2
Red nucleus
nTPM: 145.6
1821 Female, age 72, unknown 204.4
1865 Male, age 51, unknown 188.8
2785 Male, age 18, unknown 183.5
1954 Female, age 42, unknown 178.9
2823 Male, age 76, right hemisphere 159.6
2503 Female, age 72, unknown 145.5
2227 Male, age 72, unknown 132.1
2588 Male, age 74, left hemisphere 131.5
2769 Male, age 72, unknown 129.8
2725 Female, age 75, unknown 116.6
1904 Male, age 53, unknown 103.6
2584 Male, age 75, left hemisphere 72.5
Substantia nigra
nTPM: 146.6
1941 Male, age 53, unknown 255.9
2665 Male, age 74, both hemispheres 231.5
1916 Female, age 42, unknown 229.7
1889 Female, age 72, unknown 178.7
1851 Male, age 51, unknown 157.0
2409 Female, age 72, unknown 132.3
2241 Male, age 72, unknown 94.8
2699 Male, age 18, unknown 92.1
2590 Female, age 75, unknown 48.7
2583 Male, age 75, right hemisphere 45.6
Superior colliculus
nTPM: 76.7
2668 Female, age 75, unknown 179.0
1895 Male, age 76, right hemisphere 159.2
2087 Female, age 72, unknown 111.0
1796 Male, age 53, unknown 55.9
1839 Male, age 51, unknown 55.8
2261 Male, age 18, unknown 49.8
1913 Female, age 42, unknown 46.1
2587 Male, age 74, left hemisphere 38.8
1995 Male, age 72, unknown 36.1
2664 Male, age 75, both hemispheres 34.7
Ventral tegmental area
nTPM: 117.2
2218 Male, age 76, both hemispheres 174.9
2410 Female, age 72, unknown 156.3
2223 Female, age 72, unknown 138.4
1915 Female, age 42, unknown 131.2
1942 Male, age 51, unknown 58.1
2021 Male, age 53, unknown 44.2

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 83.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 83.8
Samples: 183

Max nTPM: 1148.7
Min nTPM: 1.0
Std nTPM: 126.1
Median nTPM: 37.2
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 1148.7
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 655.6
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 532.6
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 342.1
GTEX-11NUK-0011-R2a-SM-GINAO 50-59 years, male 327.6
GTEX-RU72-0011-R2A-SM-2TF6O 50-59 years, female 295.0
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 290.2
GTEX-13OW7-0011-R2b-SM-H6Q8E 50-59 years, male 283.6
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 282.9
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 272.0
GTEX-14C5O-0011-R2a-SM-5ZZV2 60-69 years, male 268.5
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 2.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 2.5
FF:10158-103A5 76 years, female 2.5

MIDBRAIN - Macaque RNA-seq
Max subtype nTPMi 106.9
Macaque sample Sample description nTPM
Substantia nigra
nTPM: 95.6
Samples: 1

Max nTPM: 95.6
Min nTPM: 95.6
Sample A 95.6
Midbrain
nTPM: 69.1
Samples: 1

Max nTPM: 69.1
Min nTPM: 69.1
Sample A 69.1
Superior colliculi
nTPM: 106.9
Samples: 1

Max nTPM: 106.9
Min nTPM: 106.9
Sample A 106.9

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 282.3
Pig sample Sample description nTPM
Substantia nigra
nTPM: 254.7
Samples: 3

Max nTPM: 518.7
Min nTPM: 73.6
Sample A Female 518.7
Sample B Female 73.6
Sample C Male 171.9
Midbrain
nTPM: 193.2
Samples: 3

Max nTPM: 337.0
Min nTPM: 109.5
Sample B Female 109.5
Sample C Male 337.0
Sample D Male 133.0
Periaqueductal gray
nTPM: 71.8
Samples: 3

Max nTPM: 85.2
Min nTPM: 47.3
Sample B Female 82.8
Sample C Male 85.2
Sample D Male 47.3
Superior colliculi
nTPM: 282.4
Samples: 4

Max nTPM: 606.0
Min nTPM: 83.1
Sample A Female 227.7
Sample B Female 83.1
Sample C Male 606.0
Sample D Male 212.7

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 118.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 118.3
Samples: 4

Max nTPM: 128.3
Min nTPM: 102.3
Sample A 102.3
Sample B 122.7
Sample C 128.3
Sample D 119.9

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