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BETA
  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • IMMUNE

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

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  • EVOLUTION

  • RPL3
EVOLUTIONARY HIPPOCAMPAL FORMATION Show tissue menu
BRAIN74 EYE4 ENDOCRINE TISSUES5 RESPIRATORY SYSTEM6 PROXIMAL DIGESTIVE TRACT5 GASTROINTESTINAL TRACT11 LIVER & GALLBLADDER4 PANCREAS1 KIDNEY & URINARY BLADDER4 MALE REPRODUCTIVE SYSTEM11 BREAST & FEMALE REPRODUCTIVE SYSTEM10 MUSCLE & VASCULAR TISSUE12 CONNECTIVE & SOFT TISSUE15 SKIN4 BONE MARROW & LYMPHOID TISSUES7
Select an organ to show its tissues
AMYGDALA ANGULAR GYRUS ANNECTANT GYRUS ANTERIOR CINGULATE GYRUS BASAL GANGLIA CAUDATE NUCLEUS CAUDATE PUTAMEN CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS CINGULATE CORTEX CLAUSTRUM CORPUS CALLOSUM CUNEUS DORSAL HIPPOCAMPUS DORSAL ROOT GANGLION DORSAL SPINAL CORD ENTORHINAL CORTEX FRONTAL CORTEX
FUSIFORM GYRUS GENICULATE NUCLEUS GLOBUS PALLIDUS GYRUS RECTUS HABENULA HIPPOCAMPAL FORMATION HYPOTHALAMUS HYPOTHALAMUS, ANTERIOR HYPOTHALAMUS, POSTERIOR INFERIOR FRONTAL GYRUS INFERIOR OCCIPITAL GYRUS INFERIOR TEMPORAL GYRUS INSULAR CORTEX LATERAL THALAMIC NUCLEI MEDULLA OBLONGATA MIDBRAIN MIDDLE FRONTAL GYRUS MIDDLE TEMPORAL GYRUS MOTOR AND PREFRONTAL CORTEX
MOTOR CORTEX OCCIPITAL CORTEX OCCIPITAL GYRUS OLFACTORY BULB ORBITAL GYRUS PERIAQUEDUCTAL GRAY PONS POSTCENTRAL GYRUS POSTERIOR CINGULATE CORTEX POSTERIOR PARAHIPPOCAMPAL GYRUS POSTERIOR THALAMUS PRECENTRAL GYRUS PREFRONTAL CORTEX PREOPTIC AREA PUTAMEN RETROSPLENIAL AND CINGULATE CORTEX RETROSPLENIAL CORTEX SEPTAL AREA SEPTUM
SOMATOSENSORY CORTEX SPINAL CORD SUBICULUM SUBSTANTIA NIGRA SUPERIOR COLLICULI SUPERIOR FRONTAL GYRUS SUPERIOR PARIETAL LOBULE SUPERIOR TEMPORAL GYRUS SUPRAMARGINAL GYRUS TEMPORAL CORTEX THALAMUS VENTRAL FOREBRAIN VENTRAL HIPPOCAMPUS VENTRAL PALLIDUM VENTRAL SPINAL CORD VISUAL CORTEX WHITE MATTER
CORNEA HARDERIAN GLAND LENS RETINA
ADRENAL GLAND PARATHYROID GLAND PINEAL GLAND PITUITARY GLAND THYROID GLAND
BRONCHUS LARYNX LUNG NASOPHARYNX OLFACTORY EPITHELIUM TRACHEA
ESOPHAGUS LIP ORAL MUCOSA SALIVARY GLAND TONGUE
CECUM COLON DUODENUM ILEUM JEJUNUM RECTUM SMALL INTESTINE STOMACH STOMACH (LOWER) STOMACH (MIDDLE) STOMACH (UPPER)
GALLBLADDER LIVER LIVER (LOBE 1) LIVER (LOBE 4)
PANCREAS
KIDNEY KIDNEY (CORTEX) KIDNEY (MEDULLA) URINARY BLADDER
BULBOURETHRAL GLAND DUCTUS DEFERENS EPIDIDYMIS MALE PREPUTIAL GLAND PENIS PROSTATE PROSTATE (ANTERIOR) PROSTATE (VENTRAL) SEMINAL VESICLE TESTIS URETHRAL GLAND
BREAST CERVIX CLITORIS ENDOMETRIUM FALLOPIAN TUBE FEMALE PREPUTIAL GLAND OVARY PLACENTA UTERUS VAGINA
AORTA BLOOD VESSEL DIAPHRAGM HEART ATRIUM HEART MUSCLE HEART VALVE HEART WALL PERIPHERAL VASCULATURE SKELETAL MUSCLE SMOOTH MUSCLE SMOOTH MUSCLE (INTESTINE) SMOOTH MUSCLE (UTERUS)
ABDOMINAL ADIPOSE TISSUE ADIPOSE TISSUE BROWN ADIPOSE TISSUE DURA MATER EAR CANAL EAR CARTILAGE JOINT CARTILAGE MENINGES ORBITAL ADIPOSE TISSUE PERICARDIUM PERITONEUM PLEURA SUBCUTANEOUS ADIPOSE TISSUE SYNOVIAL TISSUE VAGUS NERVE
EYE LID SKIN SKIN (BACK) SKIN (GROIN)
APPENDIX BLOOD, PBMC BONE MARROW LYMPH NODE SPLEEN THYMUS TONSIL
HumanMacaqueMouseRatPig
Protein evolution
Brain
Evolutionary methods
HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Not detected
Neuronal cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:1092.8 nTPM
HPA Brain:459.2 nTPM
GTEx:1092.8 nTPM
FANTOM5:105.6 Scaled Tags Per Million
Macaque:169.4 nTPM
Mouse:567.6 nTPM
Rat:217.6 nTPM
Pig:256.8 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

HIPPOCAMPUS - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA003365Antibody HPA055361
Glial cells Not detectedNot detected
Neuronal cells HighLow




HIPPOCAMPAL FORMATION - PROTEINTALKS DB MS
Median intensity 91585
Sample Intensity
Hippocampal formation_01
72143
Hippocampal formation_02
87428
Hippocampal formation_03
29424
Hippocampal formation_04
96987
Hippocampal formation_05
95743
Hippocampal formation_06
108247

HIPPOCAMPAL FORMATION - HPA Brain Stereo-seq

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

459.2
Sample id Sample description nTPM
Dentate gyrus
nTPM: 459.2
2530 Female, age 94, left hemisphere 616.5
2531 Female, age 67, both hemispheres 484.7
2010 Male, age 76, both hemispheres 454.0
2528 Male, age 74, both hemispheres 421.4
1927 Female, age 91, both hemispheres 397.2
2246 Female, age 85, both hemispheres 381.3
Entorhinal gyrus
nTPM: 450.5
2686 Male, age 75, right hemisphere 515.6
2117 Female, age 91, right hemisphere 484.4
2764 Male, age 80, right hemisphere 474.6
1787 Male, age 76, left hemisphere 430.9
2613 Female, age 94, left hemisphere 400.6
1938 Female, age 85, left hemisphere 396.8
Hippocampus, CA1
nTPM: 430.4
2082 Female, age 91, right hemisphere 471.1
2045 Male, age 76, both hemispheres 452.9
2749 Male, age 80, left hemisphere 427.1
1873 Female, age 85, both hemispheres 407.5
2527 Male, age 74, both hemispheres 393.7
Hippocampus, CA2
nTPM: 447.4
1963 Male, age 80, left hemisphere 509.5
2113 Female, age 91, right hemisphere 465.4
2437 Female, age 94, left hemisphere 462.1
1892 Male, age 76, both hemispheres 450.4
1940 Female, age 85, left hemisphere 403.9
2249 Male, age 74, both hemispheres 393.4
Hippocampus, CA3
nTPM: 430.2
2861 Female, age 67, both hemispheres 493.2
1867 Male, age 76, both hemispheres 482.8
2436 Male, age 74, both hemispheres 450.1
1891 Female, age 85, both hemispheres 405.9
2137 Male, age 80, left hemisphere 402.1
2620 Female, age 94, left hemisphere 347.2
Parahippocampal cortex
nTPM: 392.4
2018 Male, age 76, both hemispheres 465.1
1990 Female, age 91, right hemisphere 414.7
1850 Male, age 80, both hemispheres 413.2
2532 Female, age 72, left hemisphere 412.0
2245 Female, age 91, both hemispheres 400.2
1933 Female, age 85, both hemispheres 395.4
2250 Female, age 67, right hemisphere 394.4
2622 Female, age 67, right hemisphere 361.4
2692 Male, age 74, both hemispheres 353.2
2693 Female, age 94, both hemispheres 314.8
Perirhinal gyrus
nTPM: 417.4
1847 Female, age 91, left hemisphere 442.5
1841 Female, age 85, right hemisphere 442.0
1794 Male, age 80, right hemisphere 437.9
2848 Male, age 76, right hemisphere 383.1
2521 Female, age 94, right hemisphere 381.5
Subiculum
nTPM: 416.0
1977 Female, age 85, both hemispheres 453.6
2729 Female, age 91, right hemisphere 432.8
2042 Male, age 76, both hemispheres 430.9
1901 Male, age 80, both hemispheres 405.2
2438 Female, age 94, left hemisphere 393.8
2619 Male, age 74, both hemispheres 379.4

HIPPOCAMPAL FORMATION - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1092.8
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 1092.8
Samples: 255

Max nTPM: 2342.4
Min nTPM: 620.1
Std nTPM: 291.1
Median nTPM: 1031.4
GTEX-1H4P4-0011-R1b-SM-CL54V 50-59 years, male 2342.4
GTEX-1R9K4-0011-R1a-SM-F342F 60-69 years, male 2241.2
GTEX-14E6C-0011-R1a-SM-G8W86 40-49 years, male 2223.3
GTEX-OHPN-0011-R1A-SM-2I5GB 60-69 years, female 2141.8
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 2085.2
GTEX-ZAJG-0011-R1a-SM-GQ1CV 50-59 years, female 1889.3
GTEX-1LKK1-0011-R1b-SM-F2TAF 50-59 years, female 1799.1
GTEX-1399T-0011-R1b-SM-5DUWN 60-69 years, male 1792.1
GTEX-11ZTS-0011-R1a-SM-5BC71 60-69 years, female 1634.9
GTEX-13PLJ-0011-R1a-SM-GJ3QF 60-69 years, female 1611.3
GTEX-1PWST-0011-R1b-SM-F2I38 70-79 years, male 1609.6
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 1602.9
GTEX-11DYG-0011-R1a-SM-GI4X6 60-69 years, male 1583.5
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 1580.2
GTEX-145LU-0011-R1a-SM-5Q5CE 50-59 years, male 1578.1
GTEX-11ZUS-0011-R1a-SM-GI4W7 30-39 years, male 1567.5
GTEX-1N5O9-0011-R1b-SM-F3K4W 60-69 years, male 1566.1
GTEX-1NV8Z-0011-R1b-SM-F647K 60-69 years, male 1560.2
GTEX-1JJEA-0011-R1b-SM-F6495 60-69 years, male 1525.2
GTEX-13RTL-0011-R1a-SM-5PNZ8 40-49 years, male 1491.8
GTEX-17HII-0011-R1b-SM-7MGVW 50-59 years, male 1486.1
GTEX-1LVAO-0011-R1a-SM-F649O 60-69 years, male 1477.9
GTEX-1MJK2-0011-R1b-SM-F649H 50-59 years, male 1467.3
GTEX-1H3VE-0011-R1a-SM-A9G1K 40-49 years, male 1465.1
GTEX-1CAV2-0011-R1a-SM-ARZML 40-49 years, female 1465.0
GTEX-ZVZQ-0011-R1a-SM-57WBU 60-69 years, female 1463.6
GTEX-13FHO-0011-R1b-SM-5KLZG 60-69 years, male 1461.4
GTEX-1RNSC-0011-R1b-SM-F342D 60-69 years, male 1457.8
GTEX-13FHP-0011-R1b-SM-5K7XL 50-59 years, male 1455.1
GTEX-1MCQQ-0011-R1a-SM-F341G 60-69 years, male 1450.5
GTEX-13OW5-0011-R1b-SM-5L3GE 60-69 years, male 1449.2
GTEX-1O9I2-0011-R1a-SM-F2TAW 50-59 years, male 1448.9
GTEX-1HSMO-0011-R1a-SM-CM2SV 60-69 years, male 1426.3
GTEX-1F52S-0011-R1a-SM-9OSX9 60-69 years, female 1414.9
GTEX-1A32A-0011-R1a-SM-7P8SQ 50-59 years, female 1404.0
GTEX-1C6VQ-0011-R1a-SM-7P8Q2 50-59 years, male 1393.0
GTEX-13NYB-0011-R1b-SM-5KM4F 40-49 years, male 1392.0
GTEX-117XS-0011-R1b-SM-GJ3PQ 60-69 years, male 1386.3
GTEX-183WM-0011-R1a-SM-718A8 70-79 years, female 1384.6
GTEX-144GO-0011-R1a-SM-5PNWO 60-69 years, male 1377.1
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 1365.1
GTEX-14DAQ-0011-R1a-SM-G8W85 60-69 years, female 1353.6
GTEX-13PVQ-0011-R1b-SM-GJ3RQ 50-59 years, male 1344.2
GTEX-12WSH-0011-R1a-SM-5GU5V 50-59 years, male 1343.8
GTEX-1J1OQ-0011-R1a-SM-A9G1Z 40-49 years, female 1339.6
GTEX-11DXY-0011-R1b-SM-GI4VQ 60-69 years, male 1339.5
GTEX-16GPK-0011-R1b-SM-7EWDH 60-69 years, male 1331.0
GTEX-1LG7Y-0011-R1a-SM-EYYWV 50-59 years, male 1330.8
GTEX-1HGF4-0011-R1a-SM-CJI3S 60-69 years, male 1322.1
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 1316.2
GTEX-1P4AB-0011-R1b-SM-F2TAV 50-59 years, male 1293.5
GTEX-17MF6-0011-R1a-SM-72D6O 40-49 years, male 1292.2
GTEX-13NYS-0011-R1b-SM-5MR55 60-69 years, male 1290.5
GTEX-13JVG-0011-R1a-SM-5KM32 60-69 years, male 1289.8
GTEX-1PPGY-0011-R1b-SM-G8LN3 60-69 years, male 1284.8
GTEX-1GN2E-0011-R1b-SM-CE6RJ 60-69 years, male 1284.1
GTEX-1F75W-0011-R1a-SM-ARU81 60-69 years, male 1282.4
GTEX-1GMR8-0011-R1b-SM-CJI2O 50-59 years, female 1280.8
GTEX-11TTK-0011-R1b-SM-GIN92 60-69 years, female 1279.1
GTEX-1KANB-0011-R1a-SM-F3K5M 50-59 years, male 1277.5
GTEX-13VXU-0011-R1a-SM-GINAT 50-59 years, male 1267.9
GTEX-Y8DK-0011-R1A-SM-4RGLO 60-69 years, male 1267.8
GTEX-11OF3-0011-R1b-SM-H65ZT 60-69 years, male 1266.1
GTEX-12ZZZ-0011-R1a-SM-GIN8I 60-69 years, male 1260.4
GTEX-11TUW-0011-R1a-SM-DO92S 60-69 years, male 1252.0
GTEX-12WSA-0011-R1b-SM-GI4VI 60-69 years, male 1248.3
GTEX-XMD1-0011-R1A-SM-4AT4C 60-69 years, male 1239.3
GTEX-1I19N-0011-R1b-SM-GOR1A 70-79 years, male 1237.3
GTEX-1EH9U-0011-R1b-SM-CJI2B 60-69 years, male 1230.2
GTEX-1JN6P-0011-R1b-SM-G8LL3 60-69 years, male 1225.8
GTEX-ZF28-0011-R1a-SM-4WWD1 60-69 years, male 1221.8
GTEX-15DYW-0011-R1a-SM-H6Q6Q 60-69 years, female 1216.7
GTEX-11DXW-0011-R1a-SM-DNZZD 40-49 years, male 1206.7
GTEX-132Q8-0011-R1a-SM-5EGLK 60-69 years, male 1201.2
GTEX-17EVQ-0011-R1a-SM-7189S 70-79 years, male 1200.3
GTEX-1I1GS-0011-R1a-SM-CJI43 60-69 years, male 1190.3
GTEX-13QJC-0011-R1b-SM-5S2UU 60-69 years, female 1188.2
GTEX-1313W-0011-R1b-SM-5EQ4A 50-59 years, female 1187.5
GTEX-14PN4-0011-R1b-SM-69LP8 50-59 years, male 1187.1
GTEX-131YS-0011-R1a-SM-5DUXC 60-69 years, female 1185.4
GTEX-1GZHY-0011-R1a-SM-CE6RR 50-59 years, female 1185.0
GTEX-14PJM-0011-R1a-SM-CNPO3 50-59 years, female 1176.0
GTEX-11EI6-0011-R1a-SM-DO93L 60-69 years, male 1164.8
GTEX-1H1ZS-0011-R1b-SM-A9G1E 70-79 years, male 1154.4
GTEX-1IKK5-0011-R1b-SM-CE6SQ 60-69 years, male 1146.7
GTEX-14JFF-0011-R1b-SM-G8W88 60-69 years, male 1145.4
GTEX-11PRG-0011-R1b-SM-H7OHD 50-59 years, male 1135.1
GTEX-15UF6-0011-R1a-SM-9QEGH 70-79 years, female 1132.2
GTEX-14LZ3-0011-R1a-SM-69LP5 60-69 years, female 1128.6
GTEX-11UD1-0011-R1b-SM-5BC7D 40-49 years, female 1124.3
GTEX-13OVJ-0011-R1b-SM-5L3I6 50-59 years, female 1116.6
GTEX-1E1VI-0011-R1a-SM-ARZMM 50-59 years, male 1115.6
GTEX-1RQED-0011-R1a-SM-F3K5W 60-69 years, male 1114.3
GTEX-13FTY-0011-R1a-SM-5LZXE 40-49 years, female 1113.2
GTEX-1OJC4-0011-R1a-SM-F2TAZ 50-59 years, female 1112.4
GTEX-1IOXB-0011-R1a-SM-D4P27 50-59 years, male 1110.7
GTEX-1JMPZ-0011-R1b-SM-F6497 30-39 years, male 1110.5
GTEX-1I1GV-0011-R1a-SM-CL559 60-69 years, male 1104.6
GTEX-ZZPT-0011-R1b-SM-GNINL 50-59 years, male 1102.6
GTEX-1H1DG-0011-R1b-SM-CKZP1 70-79 years, male 1097.5
GTEX-13SLX-0011-R1a-SM-H6Q8N 50-59 years, female 1094.3
GTEX-14ABY-0011-R1a-SM-6EU2W 50-59 years, male 1093.4
GTEX-1MA7X-0011-R1b-SM-F2TAB 60-69 years, male 1089.4
GTEX-12126-0011-R1a-SM-GJ3Q8 20-29 years, male 1089.0
GTEX-1H3O1-0011-R1b-SM-CL554 60-69 years, male 1085.6
GTEX-17F97-0011-R1b-SM-7IGM9 50-59 years, male 1084.3
GTEX-1JMQJ-0011-R1b-SM-F2T9P 50-59 years, male 1080.4
GTEX-13CF2-0011-R1a-SM-5LZY1 60-69 years, male 1079.9
GTEX-1LSVX-0011-R1a-SM-F3K5F 60-69 years, male 1079.4
GTEX-1F75A-0011-R1b-SM-CE6RA 50-59 years, male 1078.9
GTEX-13QIC-0011-R1a-SM-5O9CJ 60-69 years, female 1077.3
GTEX-13NZA-0011-R1b-SM-5LUAF 60-69 years, male 1072.6
GTEX-1LVA9-0011-R1b-SM-F2TB5 50-59 years, male 1071.0
GTEX-1192X-0011-R1b-SM-GI4VU 50-59 years, male 1064.7
GTEX-1R9PO-0011-R1b-SM-F2I2G 60-69 years, female 1062.8
GTEX-1JMQK-0011-R1a-SM-F6484 60-69 years, male 1055.4
GTEX-1ICLZ-0011-R1b-SM-A9SM3 60-69 years, male 1055.0
GTEX-17HHY-0011-R1a-SM-7189V 50-59 years, male 1053.5
GTEX-11ZVC-0011-R1b-SM-5BC6M 50-59 years, female 1051.9
GTEX-1H1CY-0011-R1a-SM-CKZOZ 60-69 years, female 1049.3
GTEX-13OW8-0011-R1a-SM-5L3HI 60-69 years, male 1045.2
GTEX-13SLW-0011-R1a-SM-5S2W7 70-79 years, male 1043.8
GTEX-RU72-0011-R1A-SM-HAUZG 50-59 years, female 1037.7
GTEX-13O3Q-0011-R1b-SM-5KM3L 50-59 years, male 1037.5
GTEX-1GN73-0011-R1a-SM-CKZNT 60-69 years, male 1037.4
GTEX-1B8L1-0011-R1a-SM-7P8SS 60-69 years, male 1035.8
GTEX-145LS-0011-R1b-SM-5PNUP 60-69 years, female 1035.0
GTEX-13S7M-0011-R1b-SM-5PNZE 60-69 years, female 1031.4
GTEX-11H98-0011-R1a-SM-GIN8O 50-59 years, male 1029.2
GTEX-1B933-0011-R1b-SM-9QEGW 50-59 years, female 1023.3
GTEX-1PIIG-0011-R1a-SM-F649P 30-39 years, male 1021.6
GTEX-13FXS-0011-R1a-SM-5K7U6 50-59 years, male 1021.5
GTEX-17HG3-0011-R1a-SM-7LG6H 30-39 years, female 1018.7
GTEX-1JMLX-0011-R1b-SM-G9ERV 50-59 years, male 1018.4
GTEX-1LB8K-0011-R1b-SM-EZ6MV 50-59 years, male 1017.3
GTEX-1C6VR-0011-R1a-SM-7MXUE 60-69 years, male 1009.6
GTEX-RNOR-0011-R1A-SM-CNNP5 50-59 years, female 1007.1
GTEX-1RQEC-0011-R1b-SM-F2I2E 60-69 years, male 1006.2
GTEX-15EO6-0011-R1b-SM-H7OGP 50-59 years, male 1002.8
GTEX-15CHQ-0011-R1a-SM-COH27 60-69 years, male 1002.5
GTEX-ZAB4-0011-R1a-SM-4RGNO 40-49 years, male 1001.4
GTEX-11NV4-0011-R1a-SM-GINAK 60-69 years, male 1000.3
GTEX-16Z82-0011-R1b-SM-7EPHZ 60-69 years, male 998.1
GTEX-14E7W-0011-R1b-SM-5YYAT 70-79 years, male 997.1
GTEX-1C64N-0011-R1b-SM-7P8Q7 50-59 years, male 996.9
GTEX-NPJ7-0011-R1a-SM-3GACT 60-69 years, female 994.8
GTEX-1E2YA-0011-R1b-SM-CJI29 50-59 years, male 991.9
GTEX-15DCD-0011-R1b-SM-6LPIJ 70-79 years, female 991.8
GTEX-YJ89-0011-R1a-SM-4RGLS 60-69 years, male 985.4
GTEX-139T8-0011-R1a-SM-5HL75 60-69 years, male 985.1
GTEX-WL46-0011-R1A-SM-3LK6M 50-59 years, male 982.7
GTEX-ZAK1-0011-R1a-SM-GRR1R 50-59 years, female 980.7
GTEX-145MH-0011-R1b-SM-5PNWY 50-59 years, male 980.4
GTEX-12696-0011-R1a-SM-GHWPW 60-69 years, male 980.2
GTEX-12WSD-0011-R1b-SM-5LZVY 60-69 years, female 975.8
GTEX-QVUS-0011-R1A-SM-3GAD2 60-69 years, female 972.3
GTEX-11GSP-0011-R1a-SM-9QEJ3 60-69 years, female 970.1
GTEX-1JJ6O-0011-R1b-SM-F2I2M 60-69 years, male 968.0
GTEX-12ZZX-0011-R1a-SM-5EQ6B 40-49 years, female 958.1
GTEX-1EX96-0011-R1a-SM-CE6R5 50-59 years, male 957.8
GTEX-14PJO-0011-R1b-SM-6AJAK 60-69 years, male 952.0
GTEX-11GSO-0011-R1b-SM-57WD3 60-69 years, male 950.9
GTEX-1KWVE-0011-R1a-SM-F649B 30-39 years, male 950.8
GTEX-1CB4G-0011-R1b-SM-9QEHT 60-69 years, male 950.1
GTEX-17JCI-0011-R1b-SM-718A3 60-69 years, female 948.5
GTEX-WVLH-0011-R1A-SM-4MVOK 50-59 years, male 945.3
GTEX-1HSKV-0011-R1b-SM-CMKH7 60-69 years, male 945.0
GTEX-1GTWX-0011-R1a-SM-CE6RL 60-69 years, male 944.5
GTEX-11ONC-0011-R1a-SM-57WD4 60-69 years, male 941.1
GTEX-1A3MX-0011-R1b-SM-7P8PH 60-69 years, male 940.2
GTEX-1LSNL-0011-R1a-SM-F3K51 50-59 years, male 938.8
GTEX-13OW6-0011-R1a-SM-5L3HQ 50-59 years, male 937.8
GTEX-1A8G6-0011-R1a-SM-7P8PC 60-69 years, male 936.8
GTEX-13FLW-0011-R1b-SM-5LZX2 50-59 years, male 936.1
GTEX-1LH75-0011-R1a-SM-F341Y 50-59 years, female 929.1
GTEX-13OVL-0011-R1a-SM-5L3H5 50-59 years, male 927.7
GTEX-ZYY3-0011-R1b-SM-GPI92 60-69 years, female 925.4
GTEX-11WQC-0011-R1b-SM-DO932 60-69 years, male 922.7
GTEX-12WSF-0011-R1a-SM-5DUVI 70-79 years, male 922.0
GTEX-14BIM-0011-R1a-SM-69LQI 60-69 years, female 919.3
GTEX-WZTO-0011-R1B-SM-3NMAR 40-49 years, male 912.5
GTEX-ZYFD-0011-R1b-SM-GRR1T 50-59 years, male 903.6
GTEX-ZUA1-0011-R1a-SM-4YCE2 40-49 years, male 900.0
GTEX-1JMOU-0011-R1b-SM-F341B 60-69 years, female 899.9
GTEX-1N2EE-0011-R1a-SM-F3K5K 60-69 years, male 896.1
GTEX-P44H-0011-R1A-SM-3NM8J 40-49 years, male 894.2
GTEX-1I1HK-0011-R1b-SM-CM2T7 60-69 years, male 890.0
GTEX-13N2G-0011-R1b-SM-5MR3G 60-69 years, male 884.7
GTEX-13OW7-0011-R1b-SM-5L3HF 50-59 years, male 882.7
GTEX-1BAJH-0011-R1a-SM-7P8SV 70-79 years, male 879.6
GTEX-14BMV-0011-R1b-SM-G9ERL 50-59 years, male 875.9
GTEX-ZDXO-0011-R1a-SM-4WKF4 60-69 years, male 875.7
GTEX-T6MN-0011-R1A-SM-32QOY 50-59 years, male 873.7
GTEX-1POEN-0011-R1b-SM-F3K3K 30-39 years, female 872.3
GTEX-1JMQL-0011-R1a-SM-F3K4U 50-59 years, female 871.6
GTEX-13112-0011-R1b-SM-5HL7K 50-59 years, male 867.7
GTEX-13NZ8-0011-R1b-SM-5KM3V 60-69 years, female 866.8
GTEX-1CB4J-0011-R1a-SM-9WG64 60-69 years, male 866.1
GTEX-N7MT-0011-R1a-SM-CNPO1 60-69 years, female 863.9
GTEX-13RTJ-0011-R1a-SM-5O9D9 60-69 years, male 861.8
GTEX-1B8SF-0011-R1b-SM-7P8Q8 60-69 years, male 860.6
GTEX-N7MS-0011-R1a-SM-2HMJG 60-69 years, male 858.7
GTEX-1EKGG-0011-R1b-SM-9QEI1 60-69 years, male 856.5
GTEX-16XZZ-0011-R1a-SM-7LTAH 60-69 years, male 854.0
GTEX-16YQH-0011-R1a-SM-7LT8R 30-39 years, male 852.7
GTEX-12ZZY-0011-R1a-SM-GIN9E 60-69 years, male 851.0
GTEX-1IY9M-0011-R1a-SM-EXURZ 60-69 years, male 850.7
GTEX-1GN1U-0011-R1a-SM-CJI25 50-59 years, female 849.2
GTEX-1212Z-0011-R1b-SM-5BC72 60-69 years, male 847.6
GTEX-1KD4Q-0011-R1a-SM-F3K4Z 40-49 years, male 846.4
GTEX-13PDP-0011-R1a-SM-5PNX5 60-69 years, male 845.4
GTEX-1HBPI-0011-R1b-SM-A9SKF 50-59 years, male 841.0
GTEX-17EVP-0011-R1a-SM-7DHLA 40-49 years, male 840.8
GTEX-14C5O-0011-R1b-SM-6AJBW 60-69 years, male 840.2
GTEX-1GF9W-0011-R1a-SM-9QEIQ 60-69 years, male 839.4
GTEX-1F6I4-0011-R1a-SM-9OSWU 60-69 years, male 839.3
GTEX-13X6I-0011-R1b-SM-5PNZC 60-69 years, male 838.6
GTEX-1F6IF-0011-R1b-SM-9WG78 60-69 years, male 836.2
GTEX-15RJE-0011-R1b-SM-H6Q7N 40-49 years, male 833.9
GTEX-UTHO-0011-R1A-SM-3GIJO 60-69 years, male 830.2
GTEX-12WSM-0011-R1a-SM-5LZW6 60-69 years, male 829.4
GTEX-S7SE-0011-R1A-SM-2XCDE 50-59 years, male 828.6
GTEX-1H3NZ-0011-R1a-SM-CKZP5 60-69 years, male 826.2
GTEX-11GS4-0011-R1a-SM-DO129 60-69 years, male 825.1
GTEX-14PQA-0011-R1b-SM-6EU1G 50-59 years, female 825.1
GTEX-1AX9I-0011-R1b-SM-7RHG2 60-69 years, male 819.3
GTEX-15ER7-0011-R1b-SM-7KUE1 20-29 years, female 816.1
GTEX-12WSE-0011-R1b-SM-5GU4V 20-29 years, male 812.4
GTEX-1N2EF-0011-R1a-SM-F2TAT 60-69 years, male 812.3
GTEX-1QMI2-0011-R1b-SM-F3K5Q 60-69 years, male 801.0
GTEX-1F48J-0011-R1a-SM-9QEIC 50-59 years, female 798.4
GTEX-YFC4-0011-R1a-SM-4V6EH 40-49 years, female 789.3
GTEX-14E6D-0011-R1b-SM-5YYAW 50-59 years, male 784.1
GTEX-WWYW-0011-R1A-SM-3TW8G 50-59 years, female 783.0
GTEX-1EMGI-0011-R1b-SM-9OSWZ 60-69 years, male 765.1
GTEX-1B996-0011-R1b-SM-7P8PO 60-69 years, male 756.0
GTEX-NPJ8-0011-R1a-SM-33HCB 40-49 years, male 753.0
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 751.4
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y 40-49 years, male 746.4
GTEX-13N1W-0011-R1b-SM-5MR4T 70-79 years, male 742.0
GTEX-X4XX-0011-R1B-SM-3P622 60-69 years, male 737.7
GTEX-X585-0011-R1B-SM-46MVE 50-59 years, male 731.8
GTEX-139TT-0011-R1a-SM-5LZVD 60-69 years, male 730.7
GTEX-13G51-0011-R1a-SM-5LZYR 60-69 years, male 723.7
GTEX-14ASI-0011-R1b-SM-5S2TY 60-69 years, male 714.3
GTEX-1QP6S-0011-R1b-SM-F3K59 40-49 years, male 713.0
GTEX-14JIY-0011-R1a-SM-68713 60-69 years, male 712.6
GTEX-15SHU-0011-R1b-SM-H6Q7U 40-49 years, female 704.6
GTEX-WHSE-0011-R1A-SM-3P5ZK 20-29 years, male 704.3
GTEX-131XH-0011-R1a-SM-5DUWA 50-59 years, male 675.0
GTEX-1RDX4-0011-R1a-SM-F3K5H 50-59 years, female 672.7
GTEX-13JUV-0011-R1a-SM-5LZY4 40-49 years, female 670.3
GTEX-1I1GQ-0011-R1a-SM-CY8GG 50-59 years, male 661.8
GTEX-Q2AG-0011-R1A-SM-2HMJI 40-49 years, female 637.6
GTEX-1IDJH-0011-R1b-SM-ARU6U 70-79 years, male 620.1
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

105.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 105.6
FF:10169-103B7 60 years, female 152.6
FF:10153-102I9 76 years, female 58.5

HIPPOCAMPAL FORMATION - Macaque RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

169.4
Macaque sample Sample description nTPM
Subiculum
nTPM: 87.1
Samples: 1

Max nTPM: 87.1
Min nTPM: 87.1
Sample A 87.1
Entorhinal cortex
nTPM: 169.4
Samples: 2

Max nTPM: 175.5
Min nTPM: 163.2
Sample A 163.2
Sample B 175.5
Hippocampal formation
nTPM: 107.8
Samples: 4

Max nTPM: 140.9
Min nTPM: 73.8
Sample A 90.1
Sample B 73.8
Sample C 126.4
Sample D 140.9

HIPPOCAMPAL FORMATION - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

256.8
Pig sample Sample description nTPM
Subiculum
nTPM: 238.3
Samples: 4

Max nTPM: 303.8
Min nTPM: 199.4
Sample A Female 303.8
Sample B Female 245.5
Sample C Male 199.4
Sample D Male 204.4
Dorsal hippocampus
nTPM: 256.9
Samples: 4

Max nTPM: 301.3
Min nTPM: 195.9
Sample A Female 301.3
Sample B Female 258.9
Sample C Male 271.3
Sample D Male 195.9
Entorhinal cortex
nTPM: 233.7
Samples: 4

Max nTPM: 315.3
Min nTPM: 173.5
Sample A Female 207.6
Sample B Female 315.3
Sample C Male 238.5
Sample D Male 173.5
Ventral hippocampus
nTPM: 228.0
Samples: 4

Max nTPM: 260.8
Min nTPM: 207.4
Sample A Female 207.4
Sample B Female 217.0
Sample C Male 260.8
Sample D Male 226.6

HIPPOCAMPAL FORMATION - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

567.6
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 547.2
Samples: 4

Max nTPM: 569.5
Min nTPM: 527.1
Sample A 546.4
Sample B 545.8
Sample C 569.5
Sample D 527.1
Hippocampal formation
nTPM: 567.6
Samples: 4

Max nTPM: 680.8
Min nTPM: 469.6
Sample A 680.8
Sample B 522.5
Sample C 469.6
Sample D 597.6

HIPPOCAMPAL FORMATION - Rat RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

217.6
Rat sample Sample description nTPM
Entorhinal cortex
nTPM: 194.2
Samples: 4

Max nTPM: 203.2
Min nTPM: 187.7
Sample A 203.2
Sample A 198.0
Sample A 187.7
Sample B 188.0
Ventral hippocampus
nTPM: 217.5
Samples: 4

Max nTPM: 225.6
Min nTPM: 207.6
Sample A 225.6
Sample A 213.0
Sample A 223.9
Sample A 207.6

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