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  • KIAA0930
BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
Brain methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:183.1 nTPM
HPA Brain:176.5 nTPM
GTEx:183.1 nTPM
FANTOM5:180.1 Scaled Tags Per Million
Pig:29.0 nTPM
Mouse:33.1 nTPM
Allen mouse:4.4 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

176.5
Sample id Sample description nTPM
Amygdala
nTPM: 141.9
2695 Female, age 67, right hemisphere 168.2
2517 Female, age 94, left hemisphere 147.7
2514 Male, age 75, right hemisphere 136.7
1987 Female, age 91, left hemisphere 135.7
2814 Male, age 76, right hemisphere 121.3
Basal amygdala
nTPM: 176.5
2827 Female, age 67, right hemisphere 225.2
2685 Female, age 94, left hemisphere 187.5
2609 Male, age 75, right hemisphere 185.2
2243 Female, age 91, right hemisphere 176.2
2110 Male, age 80, left hemisphere 158.1
1955 Male, age 76, both hemispheres 127.1
Central amygdala
nTPM: 157.1
2826 Female, age 94, left hemisphere 185.3
2701 Female, age 91, right hemisphere 169.0
2515 Male, age 75, right hemisphere 159.5
2239 Male, age 80, left hemisphere 152.1
1905 Male, age 76, both hemispheres 119.5
Corticomedial amygdala
nTPM: 158.1
2535 Female, age 67, right hemisphere 199.0
2829 Male, age 80, left hemisphere 165.8
2428 Male, age 75, right hemisphere 163.1
2429 Female, age 94, left hemisphere 153.6
2242 Female, age 91, right hemisphere 151.8
2240 Male, age 76, both hemispheres 115.4
Lateral amygdala
nTPM: 176.2
2830 Female, age 67, right hemisphere 231.1
2256 Male, age 80, left hemisphere 189.9
2516 Male, age 75, right hemisphere 184.3
2255 Female, age 91, right hemisphere 175.9
2534 Female, age 94, left hemisphere 156.1
1883 Male, age 76, both hemispheres 119.7

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

183.1
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 183.1
Samples: 181

Max nTPM: 339.6
Min nTPM: 82.9
Std nTPM: 52.6
Median nTPM: 180.5
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 339.6
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 322.9
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 312.9
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 298.7
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 290.8
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 284.1
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 281.2
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 279.2
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 278.3
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 275.7
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 274.3
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 271.2
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 270.8
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 270.5
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 269.4
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 269.3
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 266.3
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 263.8
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 260.9
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 260.8
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 258.5
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 258.2
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 252.5
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 252.1
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 247.6
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 244.9
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 244.3
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 243.5
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 241.4
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 240.9
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 240.4
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 237.8
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 234.3
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 233.3
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 231.5
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 228.3
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 225.2
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 223.3
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 222.3
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 220.6
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 218.5
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 217.1
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 216.9
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 215.5
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 214.1
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 213.8
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 213.0
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 212.6
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 212.3
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 212.1
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 210.9
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 210.2
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 209.5
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 208.3
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 207.6
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 206.5
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 204.2
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 202.6
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 201.5
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 201.4
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 198.7
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 198.7
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 198.6
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 198.3
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 198.1
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 198.0
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 196.7
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 196.3
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 196.3
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 195.7
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 195.3
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 194.5
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 193.8
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 193.6
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 193.4
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 193.2
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 192.8
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 191.0
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 190.5
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 189.7
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 189.6
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 188.6
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 187.5
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 186.5
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 186.4
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 186.2
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 184.0
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 183.5
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 182.5
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 182.2
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 180.5
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 176.0
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 175.3
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 175.2
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 173.9
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 173.0
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 172.8
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 170.4
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 167.8
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 166.5
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 165.8
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 165.5
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 163.9
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 163.8
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 163.6
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 163.4
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 163.4
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 163.0
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 162.4
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 161.6
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 159.8
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 158.7
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 158.3
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 158.1
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 157.3
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 155.7
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 155.2
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 154.7
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 154.4
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 153.8
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 153.5
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 153.4
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 151.7
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 151.6
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 151.5
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 150.9
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 150.6
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 149.4
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 149.3
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 148.9
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 147.5
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 147.2
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 145.9
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 145.0
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 143.2
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 141.9
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 141.4
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 141.1
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 139.8
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 139.6
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 138.2
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 137.1
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 136.4
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 135.2
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 135.0
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 134.3
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 133.6
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 133.2
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 131.2
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 129.3
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 128.8
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 128.3
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 128.2
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 127.9
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 127.8
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 126.7
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 125.9
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 125.7
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 124.4
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 122.0
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 121.8
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 121.5
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 120.8
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 120.6
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 114.5
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 112.2
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 111.7
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 111.0
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 110.5
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 109.1
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 108.2
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 106.7
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 105.6
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 105.5
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 103.2
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 103.2
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 102.3
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 101.0
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 99.7
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 97.2
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 82.9
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

180.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 180.1
FF:10151-102I7 76 years, female 180.1

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

29.0
Pig sample Sample description nTPM
Amygdala
nTPM: 29.0
Samples: 4

Max nTPM: 31.7
Min nTPM: 27.2
Sample A Female 29.5
Sample B Female 27.2
Sample C Male 31.7
Sample D Male 27.6

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

33.1
Mouse sample Sample description nTPM
Amygdala
nTPM: 33.1
Samples: 4

Max nTPM: 36.8
Min nTPM: 31.1
Sample A Male 31.1
Sample B Male 31.5
Sample C Female 36.8
Sample D Female 33.0

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

4.4
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 4.4
76003377 Antisense, RP_060608_02_D04, Mouse strain C57BL/6J (56 days, male) 4.4

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