A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
9.1
nTPM
Monaco:
181.1
nTPM
Schmiedel:
115.5
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
9.1
HPA sample
nTPM
Classical monocyte nTPM: 9.1
Samples: 6
Max nTPM: 30.3
Min nTPM: 1.3
P10809_1003
30.3
P10809_1020
5.2
P10809_1039
1.3
P10809_1058
4.4
P10809_1080
6.2
P10809_1107
7.2
Intermediate monocyte nTPM: 7.7
Samples: 6
Max nTPM: 14.6
Min nTPM: 2.0
P10809_1004
14.6
P10809_1023
2.0
P10809_1042
6.9
P10809_1061
13.4
P10809_1081
5.3
P10809_1108
3.9
Non-classical monocyte nTPM: 7.0
Samples: 5
Max nTPM: 13.7
Min nTPM: 3.0
P10809_1005
13.7
P10809_1053
4.8
P10809_1072
9.5
P10809_1082
4.2
P10809_1109
3.0
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
181.1
Monaco sample
nTPM
Classical monocyte nTPM: 181.1
Samples: 4
Max nTPM: 205.3
Min nTPM: 167.2
RHH5313_R3680
167.9
RHH5221_R3593
205.3
RHH5250_R3622
183.9
RHH5279_R3651
167.2
Intermediate monocyte nTPM: 136.9
Samples: 4
Max nTPM: 189.6
Min nTPM: 108.5
RHH5314_R3681
110.7
RHH5222_R3594
189.6
RHH5251_R3623
108.5
RHH5280_R3652
138.8
Non-classical monocyte nTPM: 145.6
Samples: 4
Max nTPM: 178.0
Min nTPM: 108.6
RHH5315_R3682
108.6
RHH5223_R3595
178.0
RHH5252_R3624
136.3
RHH5281_R3653
159.6
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
115.5
Schmiedel sample id
TPM
Classical monocyte TPM: 115.5
Samples: 91
Max TPM: 195.3
Min TPM: 61.2
MONOCYTES_1
195.3
MONOCYTES_2
172.3
MONOCYTES_3
160.3
MONOCYTES_4
157.9
MONOCYTES_5
155.1
MONOCYTES_6
154.5
MONOCYTES_7
154.2
MONOCYTES_8
153.8
MONOCYTES_9
151.8
MONOCYTES_10
144.7
MONOCYTES_11
143.7
MONOCYTES_12
141.7
MONOCYTES_13
141.6
MONOCYTES_14
139.0
MONOCYTES_15
138.5
MONOCYTES_16
138.0
MONOCYTES_17
137.3
MONOCYTES_18
135.6
MONOCYTES_19
134.8
MONOCYTES_20
133.4
MONOCYTES_21
132.7
MONOCYTES_22
130.6
MONOCYTES_23
127.4
MONOCYTES_24
126.6
MONOCYTES_25
123.9
MONOCYTES_26
123.6
MONOCYTES_27
122.6
MONOCYTES_28
122.4
MONOCYTES_29
121.2
MONOCYTES_30
120.5
MONOCYTES_31
120.4
MONOCYTES_32
119.9
MONOCYTES_33
119.8
MONOCYTES_34
119.6
MONOCYTES_35
119.1
MONOCYTES_36
119.0
MONOCYTES_37
118.1
MONOCYTES_38
117.8
MONOCYTES_39
117.8
MONOCYTES_40
117.2
MONOCYTES_41
117.0
MONOCYTES_42
116.9
MONOCYTES_43
116.7
MONOCYTES_44
115.1
MONOCYTES_45
114.7
MONOCYTES_46
114.5
MONOCYTES_47
114.2
MONOCYTES_48
114.0
MONOCYTES_49
113.3
MONOCYTES_50
113.1
MONOCYTES_51
112.6
MONOCYTES_52
111.3
MONOCYTES_53
110.8
MONOCYTES_54
110.4
MONOCYTES_55
110.1
MONOCYTES_56
109.9
MONOCYTES_57
109.0
MONOCYTES_58
108.4
MONOCYTES_59
107.7
MONOCYTES_60
107.7
MONOCYTES_61
106.9
MONOCYTES_62
106.7
MONOCYTES_63
105.5
MONOCYTES_64
104.2
MONOCYTES_65
103.3
MONOCYTES_66
103.3
MONOCYTES_67
103.3
MONOCYTES_68
102.9
MONOCYTES_69
102.4
MONOCYTES_70
100.3
MONOCYTES_71
99.7
MONOCYTES_72
99.7
MONOCYTES_73
99.6
MONOCYTES_74
98.5
MONOCYTES_75
98.1
MONOCYTES_76
95.9
MONOCYTES_77
93.1
MONOCYTES_78
90.5
MONOCYTES_79
87.8
MONOCYTES_80
86.3
MONOCYTES_81
86.0
MONOCYTES_82
85.9
MONOCYTES_83
85.2
MONOCYTES_84
85.1
MONOCYTES_85
84.5
MONOCYTES_86
81.2
MONOCYTES_87
76.2
MONOCYTES_88
74.3
MONOCYTES_89
71.8
MONOCYTES_90
63.4
MONOCYTES_91
61.2
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Non-classical monocyte TPM: 109.2
Samples: 90
Max TPM: 158.1
Min TPM: 65.8
M2_1
158.1
M2_2
156.6
M2_3
155.0
M2_4
152.0
M2_5
146.8
M2_6
145.7
M2_7
143.6
M2_8
143.5
M2_9
140.5
M2_10
140.4
M2_11
139.6
M2_12
135.4
M2_13
133.2
M2_14
133.2
M2_15
132.6
M2_16
131.3
M2_17
126.1
M2_18
124.6
M2_19
123.9
M2_20
122.7
M2_21
122.4
M2_22
121.6
M2_23
121.5
M2_24
120.7
M2_25
120.2
M2_26
119.5
M2_27
117.9
M2_28
117.8
M2_29
116.8
M2_30
116.1
M2_31
115.2
M2_32
114.1
M2_33
114.0
M2_34
113.7
M2_35
113.6
M2_36
113.2
M2_37
113.2
M2_38
113.2
M2_39
112.5
M2_40
112.5
M2_41
111.6
M2_42
109.9
M2_43
109.9
M2_44
109.2
M2_45
109.1
M2_46
108.5
M2_47
107.6
M2_48
107.4
M2_49
106.9
M2_50
106.3
M2_51
105.9
M2_52
105.1
M2_53
102.7
M2_54
102.6
M2_55
102.0
M2_56
100.9
M2_57
100.6
M2_58
100.0
M2_59
99.3
M2_60
98.9
M2_61
97.8
M2_62
95.0
M2_63
94.8
M2_64
94.6
M2_65
94.5
M2_66
93.8
M2_67
93.7
M2_68
93.7
M2_69
93.6
M2_70
93.2
M2_71
93.0
M2_72
92.9
M2_73
92.3
M2_74
90.5
M2_75
89.8
M2_76
89.2
M2_77
88.1
M2_78
87.4
M2_79
86.6
M2_80
84.9
M2_81
84.5
M2_82
82.0
M2_83
81.9
M2_84
80.2
M2_85
80.0
M2_86
77.7
M2_87
74.5
M2_88
74.4
M2_89
72.0
M2_90
65.8
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