MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:135.6 nTPM
HPA Brain:159.6 nTPM
GTEx:135.6 nTPM
FANTOM5:181.9 Scaled Tags Per Million
Pig:186.1 nTPM
Mouse:128.0 nTPM
Allen mouse:21.1 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 159.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 135.1
1870 Female, age 42, unknown 160.7
1827 Male, age 72, unknown 144.1
1833 Male, age 53, unknown 143.8
1830 Male, age 51, unknown 141.9
2666 Male, age 74, left hemisphere 135.1
2411 Female, age 72, unknown 133.6
2828 Female, age 72, unknown 130.9
2019 Male, age 18, unknown 122.8
2219 Male, age 76, both hemispheres 122.5
2586 Male, age 75, left hemisphere 115.3
Dorsal raphe nucleus
nTPM: 145.4
2016 Female, age 72, unknown 159.3
1828 Male, age 53, unknown 151.2
2298 Female, age 72, unknown 145.1
2047 Male, age 72, unknown 136.7
2750 Male, age 76, both hemispheres 134.9
Inferior colliculus
nTPM: 134.0
2849 Male, age 72, unknown 135.8
1890 Male, age 53, unknown 135.7
2097 Female, age 72, unknown 134.4
1848 Female, age 42, unknown 130.2
Median raphe nucleus
nTPM: 159.6
2220 Male, age 76, midline 159.6
Periaquaductal grey, anterior
nTPM: 146.6
1947 Male, age 18, unknown 160.7
2502 Female, age 75, unknown 154.5
1795 Male, age 51, unknown 124.6
Periaquaductal grey, dorsal
nTPM: 142.4
2850 Male, age 76, both hemispheres 164.4
1831 Male, age 72, unknown 143.8
1840 Male, age 53, unknown 137.5
2464 Female, age 72, unknown 124.1
Periaquaductal grey, lateral
nTPM: 138.3
2140 Male, age 76, both hemispheres 152.0
2053 Male, age 18, unknown 143.8
2272 Male, age 74, both hemispheres 119.1
Pretectal area
nTPM: 140.1
2224 Female, age 72, unknown 154.3
1815 Male, age 53, unknown 148.4
2667 Female, age 75, unknown 145.3
2407 Male, age 75, both hemispheres 144.6
2825 Male, age 18, unknown 143.1
1817 Female, age 42, unknown 139.9
2273 Male, age 74, both hemispheres 137.1
1816 Male, age 51, unknown 135.1
2007 Male, age 72, unknown 135.0
1944 Female, age 72, unknown 129.5
2316 Male, age 76, right hemisphere 128.8
Red nucleus
nTPM: 152.6
1821 Female, age 72, unknown 188.9
2503 Female, age 72, unknown 165.4
1954 Female, age 42, unknown 162.0
1904 Male, age 53, unknown 160.4
2725 Female, age 75, unknown 158.0
1865 Male, age 51, unknown 157.6
2823 Male, age 76, right hemisphere 149.2
2227 Male, age 72, unknown 145.3
2769 Male, age 72, unknown 144.8
2588 Male, age 74, left hemisphere 137.0
2584 Male, age 75, left hemisphere 133.3
2785 Male, age 18, unknown 129.6
Substantia nigra
nTPM: 157.0
1916 Female, age 42, unknown 177.5
2699 Male, age 18, unknown 174.5
2409 Female, age 72, unknown 166.9
2241 Male, age 72, unknown 165.0
1851 Male, age 51, unknown 162.9
1941 Male, age 53, unknown 151.8
1889 Female, age 72, unknown 150.8
2590 Female, age 75, unknown 145.1
2665 Male, age 74, both hemispheres 144.0
2583 Male, age 75, right hemisphere 131.7
Superior colliculus
nTPM: 138.9
1913 Female, age 42, unknown 162.1
2587 Male, age 74, left hemisphere 154.8
1839 Male, age 51, unknown 145.3
1995 Male, age 72, unknown 143.6
2664 Male, age 75, both hemispheres 138.4
2261 Male, age 18, unknown 135.0
2668 Female, age 75, unknown 130.2
1895 Male, age 76, right hemisphere 128.2
1796 Male, age 53, unknown 127.6
2087 Female, age 72, unknown 124.2
Ventral tegmental area
nTPM: 145.8
2223 Female, age 72, unknown 156.9
1915 Female, age 42, unknown 155.2
1942 Male, age 51, unknown 147.2
2218 Male, age 76, both hemispheres 146.0
2410 Female, age 72, unknown 137.0
2021 Male, age 53, unknown 132.7

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 135.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 135.6
Samples: 183

Max nTPM: 260.4
Min nTPM: 68.8
Std nTPM: 32.3
Median nTPM: 129.9
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 260.4
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 244.0
GTEX-ZAJG-0011-R2a-SM-GNTAX 50-59 years, female 225.5
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 225.4
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 217.3
GTEX-1JN1M-0011-R2b-SM-G9EPE 60-69 years, female 206.7
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 203.8
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 202.1
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 199.4
GTEX-RN5K-0011-R2A-SM-GQ1CA 50-59 years, female 193.5
GTEX-1I19N-0011-R2b-SM-GPRYG 70-79 years, male 187.7
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 181.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 181.9
FF:10158-103A5 76 years, female 181.9

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 186.1
Pig sample Sample description nTPM
Substantia nigra
nTPM: 172.9
Samples: 4

Max nTPM: 184.2
Min nTPM: 152.0
Sample A Female 184.2
Sample B Female 152.0
Sample C Male 171.7
Sample D Male 183.6
Midbrain
nTPM: 186.1
Samples: 4

Max nTPM: 249.8
Min nTPM: 156.9
Sample A Female 249.8
Sample B Female 176.9
Sample C Male 160.9
Sample D Male 156.9
Periaqueductal gray
nTPM: 160.2
Samples: 3

Max nTPM: 163.8
Min nTPM: 154.5
Sample B Female 163.8
Sample C Male 162.4
Sample D Male 154.5
Superior colliculi
nTPM: 180.2
Samples: 4

Max nTPM: 196.2
Min nTPM: 151.9
Sample A Female 196.2
Sample B Female 151.9
Sample C Male 188.6
Sample D Male 184.2

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 128.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 128.0
Samples: 4

Max nTPM: 132.8
Min nTPM: 123.1
Sample A Male 123.4
Sample B Male 123.1
Sample C Female 132.6
Sample D Female 132.8

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 21.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 21.1
532638 Antisense, RP_040810_02_H01, Mouse strain C57BL/6J (56 days, male) 21.1

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