A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
5.9
nTPM
Monaco:
46.0
nTPM
Schmiedel:
37.0
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
5.9
HPA sample
nTPM
NK-cell nTPM: 5.9
Samples: 6
Max nTPM: 12.9
Min nTPM: 0.5
P10809_1013
9.1
P10809_1033
12.9
P10809_1052
7.2
P10809_1071
0.5
P10809_1093
5.2
P10809_1103
0.5
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
46.0
Monaco sample
nTPM
NK-cell nTPM: 46.0
Samples: 4
Max nTPM: 50.4
Min nTPM: 42.1
RHH5316_R3683
42.1
RHH5224_R3596
43.9
RHH5253_R3625
47.5
RHH5282_R3654
50.4
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
37.0
Schmiedel sample id
TPM
NK-cell TPM: 37.0
Samples: 90
Max TPM: 65.3
Min TPM: 9.5
NK_1
65.3
NK_2
60.0
NK_3
59.6
NK_4
58.5
NK_5
58.4
NK_6
57.1
NK_7
56.6
NK_8
55.7
NK_9
55.6
NK_10
54.8
NK_11
54.7
NK_12
54.4
NK_13
54.1
NK_14
54.1
NK_15
52.9
NK_16
49.8
NK_17
49.2
NK_18
48.9
NK_19
48.5
NK_20
48.4
NK_21
48.2
NK_22
48.1
NK_23
47.7
NK_24
47.6
NK_25
47.5
NK_26
47.2
NK_27
47.2
NK_28
46.0
NK_29
45.5
NK_30
44.9
NK_31
44.4
NK_32
42.5
NK_33
41.8
NK_34
41.7
NK_35
41.6
NK_36
41.3
NK_37
40.6
NK_38
40.5
NK_39
40.5
NK_40
40.2
NK_41
40.1
NK_42
39.5
NK_43
38.6
NK_44
38.0
NK_45
37.4
NK_46
36.7
NK_47
36.6
NK_48
36.1
NK_49
36.0
NK_50
35.2
NK_51
34.9
NK_52
34.6
NK_53
34.0
NK_54
33.8
NK_55
31.9
NK_56
31.8
NK_57
31.8
NK_58
30.8
NK_59
30.3
NK_60
28.3
NK_61
28.3
NK_62
28.3
NK_63
28.2
NK_64
28.2
NK_65
27.4
NK_66
27.4
NK_67
27.2
NK_68
26.7
NK_69
26.5
NK_70
26.3
NK_71
25.6
NK_72
24.1
NK_73
23.7
NK_74
23.1
NK_75
23.0
NK_76
21.6
NK_77
21.4
NK_78
21.4
NK_79
19.5
NK_80
19.5
NK_81
19.1
NK_82
18.6
NK_83
18.2
NK_84
16.8
NK_85
16.1
NK_86
14.7
NK_87
13.7
NK_88
12.3
NK_89
11.7
NK_90
9.5
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