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  • MLC1
BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
Brain methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:211.0 nTPM
HPA Brain:224.1 nTPM
GTEx:211.0 nTPM
FANTOM5:225.8 Scaled Tags Per Million
Pig:133.4 nTPM
Mouse:147.9 nTPM
Allen mouse:7.0 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

224.1
Sample id Sample description nTPM
Amygdala
nTPM: 216.7
2695 Female, age 67, right hemisphere 252.6
1987 Female, age 91, left hemisphere 251.0
2517 Female, age 94, left hemisphere 223.7
2514 Male, age 75, right hemisphere 213.1
2814 Male, age 76, right hemisphere 143.3
Basal amygdala
nTPM: 197.6
2609 Male, age 75, right hemisphere 289.2
2243 Female, age 91, right hemisphere 197.6
2110 Male, age 80, left hemisphere 183.5
2685 Female, age 94, left hemisphere 173.4
1955 Male, age 76, both hemispheres 172.3
2827 Female, age 67, right hemisphere 169.6
Central amygdala
nTPM: 224.1
2515 Male, age 75, right hemisphere 311.6
2826 Female, age 94, left hemisphere 241.2
2701 Female, age 91, right hemisphere 204.7
2239 Male, age 80, left hemisphere 192.8
1905 Male, age 76, both hemispheres 170.0
Corticomedial amygdala
nTPM: 179.2
2428 Male, age 75, right hemisphere 250.2
2829 Male, age 80, left hemisphere 201.6
2242 Female, age 91, right hemisphere 200.0
2535 Female, age 67, right hemisphere 146.4
2429 Female, age 94, left hemisphere 138.4
2240 Male, age 76, both hemispheres 138.3
Lateral amygdala
nTPM: 218.9
2516 Male, age 75, right hemisphere 276.1
2256 Male, age 80, left hemisphere 246.8
2830 Female, age 67, right hemisphere 225.4
2255 Female, age 91, right hemisphere 223.6
2534 Female, age 94, left hemisphere 189.2
1883 Male, age 76, both hemispheres 152.1

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

211.0
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 211.0
Samples: 181

Max nTPM: 538.8
Min nTPM: 19.7
Std nTPM: 91.0
Median nTPM: 207.7
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 538.8
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 527.2
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 469.7
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 434.6
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 417.2
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 403.7
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 403.5
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 402.0
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 397.8
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 390.0
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 364.0
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 359.5
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 353.1
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 343.0
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 341.7
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 333.2
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 333.2
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 324.9
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 323.1
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 322.9
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 320.9
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 317.4
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 313.4
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 312.7
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 306.9
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 306.9
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 305.4
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 304.1
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 304.1
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 298.0
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 294.7
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 293.2
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 288.3
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 283.8
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 279.4
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 278.6
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 276.2
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 271.3
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 271.0
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 269.1
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 268.5
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 261.5
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 260.7
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 260.0
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 259.9
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 255.8
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 252.0
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 251.4
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 250.0
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 249.0
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 248.5
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 248.3
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 244.2
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 243.3
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 241.9
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 240.3
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 240.2
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 239.2
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 237.3
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 236.3
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 235.1
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 234.9
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 234.5
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 234.2
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 234.1
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 233.7
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 232.9
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 228.3
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 227.2
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 227.0
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 224.4
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 223.5
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 222.1
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 221.7
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 221.6
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 220.9
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 220.7
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 220.4
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 218.9
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 217.5
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 217.3
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 215.3
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 213.7
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 213.0
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 212.9
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 212.5
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 210.0
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 209.0
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 208.9
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 208.7
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 207.7
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 207.6
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 207.4
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 203.4
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 203.3
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 202.1
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 199.4
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 198.8
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 197.2
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 195.5
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 191.9
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 190.7
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 190.4
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 184.6
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 182.4
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 180.1
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 179.9
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 179.1
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 178.5
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 178.0
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 176.6
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 175.1
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 173.3
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 172.1
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 171.2
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 170.7
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 170.5
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 170.0
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 166.2
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 166.1
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 164.2
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 163.8
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 163.5
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 162.7
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 161.4
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 159.1
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 158.8
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 157.3
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 155.4
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 154.9
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 153.2
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 153.1
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 148.5
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 148.2
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 144.3
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 144.1
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 142.2
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 142.0
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 141.4
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 141.1
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 135.6
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 135.0
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 134.6
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 133.8
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 133.5
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 132.6
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 132.2
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 130.9
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 129.5
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 129.3
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 129.2
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 129.1
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 126.9
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 126.2
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 124.9
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 124.1
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 122.6
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 118.3
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 116.6
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 113.8
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 112.4
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 111.5
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 108.4
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 101.8
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 101.4
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 100.4
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 98.9
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 97.2
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 95.5
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 91.8
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 90.7
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 89.8
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 83.2
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 76.2
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 65.2
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 58.6
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 55.8
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 53.3
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 41.0
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 36.0
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 19.7
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

225.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 225.8
FF:10151-102I7 76 years, female 225.8

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

133.4
Pig sample Sample description nTPM
Amygdala
nTPM: 133.4
Samples: 4

Max nTPM: 143.8
Min nTPM: 122.6
Sample A Female 143.8
Sample B Female 122.6
Sample C Male 128.9
Sample D Male 138.2

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

147.9
Mouse sample Sample description nTPM
Amygdala
nTPM: 147.9
Samples: 4

Max nTPM: 162.4
Min nTPM: 136.5
Sample A Male 136.5
Sample B Male 140.6
Sample C Female 162.4
Sample D Female 152.2

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

7.0
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 7.0
1770 Antisense, RP_040526_02_G02, Mouse strain C57BL/6J (56 days, male) 7.0
1771 Antisense, RP_040526_02_G02, Mouse strain C57BL/6J (56 days, male) 2.8

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