MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:111.2 nTPM
HPA Brain:234.4 nTPM
GTEx:111.2 nTPM
FANTOM5:58.6 Scaled Tags Per Million
Pig:155.5 nTPM
Mouse:128.7 nTPM
Allen mouse:3.0 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 234.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 163.4
2586 Male, age 75, left hemisphere 304.0
2828 Female, age 72, unknown 250.3
1827 Male, age 72, unknown 166.8
2666 Male, age 74, left hemisphere 163.4
1870 Female, age 42, unknown 147.1
2219 Male, age 76, both hemispheres 135.6
1833 Male, age 53, unknown 133.3
2411 Female, age 72, unknown 127.0
1830 Male, age 51, unknown 120.8
2019 Male, age 18, unknown 85.8
Dorsal raphe nucleus
nTPM: 212.4
2016 Female, age 72, unknown 257.7
2047 Male, age 72, unknown 235.6
2298 Female, age 72, unknown 226.5
1828 Male, age 53, unknown 210.7
2750 Male, age 76, both hemispheres 131.7
Inferior colliculus
nTPM: 170.0
1848 Female, age 42, unknown 193.0
2849 Male, age 72, unknown 188.0
1890 Male, age 53, unknown 154.8
2097 Female, age 72, unknown 144.0
Median raphe nucleus
nTPM: 156.2
2220 Male, age 76, midline 156.2
Periaquaductal grey, anterior
nTPM: 202.5
1795 Male, age 51, unknown 221.2
2502 Female, age 75, unknown 198.4
1947 Male, age 18, unknown 188.0
Periaquaductal grey, dorsal
nTPM: 234.4
1840 Male, age 53, unknown 289.2
2850 Male, age 76, both hemispheres 273.7
1831 Male, age 72, unknown 193.4
2464 Female, age 72, unknown 181.4
Periaquaductal grey, lateral
nTPM: 223.8
2053 Male, age 18, unknown 283.4
2140 Male, age 76, both hemispheres 262.7
2272 Male, age 74, both hemispheres 125.4
Pretectal area
nTPM: 164.2
2825 Male, age 18, unknown 224.8
2407 Male, age 75, both hemispheres 205.2
2316 Male, age 76, right hemisphere 176.2
2224 Female, age 72, unknown 174.5
2273 Male, age 74, both hemispheres 165.0
1816 Male, age 51, unknown 157.2
1815 Male, age 53, unknown 153.2
1944 Female, age 72, unknown 151.7
2667 Female, age 75, unknown 145.1
1817 Female, age 42, unknown 144.5
2007 Male, age 72, unknown 108.5
Red nucleus
nTPM: 139.8
2503 Female, age 72, unknown 165.6
2769 Male, age 72, unknown 154.0
2588 Male, age 74, left hemisphere 153.7
2227 Male, age 72, unknown 150.3
1954 Female, age 42, unknown 149.2
2584 Male, age 75, left hemisphere 145.1
1821 Female, age 72, unknown 140.9
1904 Male, age 53, unknown 137.9
2725 Female, age 75, unknown 137.1
1865 Male, age 51, unknown 130.4
2823 Male, age 76, right hemisphere 122.3
2785 Male, age 18, unknown 91.4
Substantia nigra
nTPM: 161.6
2699 Male, age 18, unknown 241.8
1916 Female, age 42, unknown 191.6
2590 Female, age 75, unknown 180.0
2583 Male, age 75, right hemisphere 178.2
1851 Male, age 51, unknown 163.3
2665 Male, age 74, both hemispheres 160.8
1889 Female, age 72, unknown 134.5
2241 Male, age 72, unknown 129.6
1941 Male, age 53, unknown 125.7
2409 Female, age 72, unknown 110.7
Superior colliculus
nTPM: 194.7
2664 Male, age 75, both hemispheres 377.0
1995 Male, age 72, unknown 238.8
1796 Male, age 53, unknown 194.8
2261 Male, age 18, unknown 186.9
2668 Female, age 75, unknown 185.3
1839 Male, age 51, unknown 182.9
2087 Female, age 72, unknown 164.1
1913 Female, age 42, unknown 161.1
2587 Male, age 74, left hemisphere 152.1
1895 Male, age 76, right hemisphere 104.3
Ventral tegmental area
nTPM: 167.0
1942 Male, age 51, unknown 203.5
2021 Male, age 53, unknown 203.0
1915 Female, age 42, unknown 172.8
2410 Female, age 72, unknown 147.9
2223 Female, age 72, unknown 137.5
2218 Male, age 76, both hemispheres 137.4

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 111.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 111.2
Samples: 183

Max nTPM: 341.7
Min nTPM: 4.4
Std nTPM: 61.6
Median nTPM: 102.0
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 341.7
GTEX-1O9I2-0011-R2b-SM-F3K53 50-59 years, male 312.8
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 261.7
GTEX-1KWVE-0011-R2a-SM-G8OLX 30-39 years, male 252.3
GTEX-13CF2-0011-R2a-SM-5L3DC 60-69 years, male 246.0
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 242.8
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 238.1
GTEX-1192X-0011-R2b-SM-GI4VV 50-59 years, male 233.2
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 229.9
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 227.5
GTEX-1IDJH-0011-R2a-SM-GPI9D 70-79 years, male 226.6
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 58.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 58.6
FF:10158-103A5 76 years, female 58.6

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 155.5
Pig sample Sample description nTPM
Substantia nigra
nTPM: 152.3
Samples: 4

Max nTPM: 168.6
Min nTPM: 130.0
Sample A Female 168.6
Sample B Female 130.0
Sample C Male 143.4
Sample D Male 167.0
Midbrain
nTPM: 151.3
Samples: 4

Max nTPM: 196.0
Min nTPM: 106.4
Sample A Female 196.0
Sample B Female 162.0
Sample C Male 140.9
Sample D Male 106.4
Periaqueductal gray
nTPM: 155.5
Samples: 3

Max nTPM: 177.0
Min nTPM: 137.3
Sample B Female 177.0
Sample C Male 152.2
Sample D Male 137.3
Superior colliculi
nTPM: 129.8
Samples: 4

Max nTPM: 152.0
Min nTPM: 74.4
Sample A Female 149.0
Sample B Female 74.4
Sample C Male 143.8
Sample D Male 152.0

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 128.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 128.7
Samples: 4

Max nTPM: 140.8
Min nTPM: 118.2
Sample A Male 140.8
Sample B Male 124.1
Sample C Female 118.2
Sample D Female 131.7

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 3.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 3.0
1770 Antisense, RP_040526_02_G02, Mouse strain C57BL/6J (56 days, male) 3.0
1771 Antisense, RP_040526_02_G02, Mouse strain C57BL/6J (56 days, male) 2.1

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