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BETA
  • SUMMARY

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  • BRAIN

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  • RIN3
EVOLUTIONARY VAGINA Show tissue menu
BRAIN74 EYE4 ENDOCRINE TISSUES5 RESPIRATORY SYSTEM6 PROXIMAL DIGESTIVE TRACT5 GASTROINTESTINAL TRACT11 LIVER & GALLBLADDER4 PANCREAS1 KIDNEY & URINARY BLADDER4 MALE REPRODUCTIVE SYSTEM11 BREAST & FEMALE REPRODUCTIVE SYSTEM10 MUSCLE & VASCULAR TISSUE12 CONNECTIVE & SOFT TISSUE15 SKIN4 BONE MARROW & LYMPHOID TISSUES7
Select an organ to show its tissues
AMYGDALA ANGULAR GYRUS ANNECTANT GYRUS ANTERIOR CINGULATE GYRUS BASAL GANGLIA CAUDATE NUCLEUS CAUDATE PUTAMEN CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS CINGULATE CORTEX CLAUSTRUM CORPUS CALLOSUM CUNEUS DORSAL HIPPOCAMPUS DORSAL ROOT GANGLION DORSAL SPINAL CORD ENTORHINAL CORTEX FRONTAL CORTEX
FUSIFORM GYRUS GENICULATE NUCLEUS GLOBUS PALLIDUS GYRUS RECTUS HABENULA HIPPOCAMPAL FORMATION HYPOTHALAMUS HYPOTHALAMUS, ANTERIOR HYPOTHALAMUS, POSTERIOR INFERIOR FRONTAL GYRUS INFERIOR OCCIPITAL GYRUS INFERIOR TEMPORAL GYRUS INSULAR CORTEX LATERAL THALAMIC NUCLEI MEDULLA OBLONGATA MIDBRAIN MIDDLE FRONTAL GYRUS MIDDLE TEMPORAL GYRUS MOTOR AND PREFRONTAL CORTEX
MOTOR CORTEX OCCIPITAL CORTEX OCCIPITAL GYRUS OLFACTORY BULB ORBITAL GYRUS PERIAQUEDUCTAL GRAY PONS POSTCENTRAL GYRUS POSTERIOR CINGULATE CORTEX POSTERIOR PARAHIPPOCAMPAL GYRUS POSTERIOR THALAMUS PRECENTRAL GYRUS PREFRONTAL CORTEX PREOPTIC AREA PUTAMEN RETROSPLENIAL AND CINGULATE CORTEX RETROSPLENIAL CORTEX SEPTAL AREA SEPTUM
SOMATOSENSORY CORTEX SPINAL CORD SUBICULUM SUBSTANTIA NIGRA SUPERIOR COLLICULI SUPERIOR FRONTAL GYRUS SUPERIOR PARIETAL LOBULE SUPERIOR TEMPORAL GYRUS SUPRAMARGINAL GYRUS TEMPORAL CORTEX THALAMUS VENTRAL FOREBRAIN VENTRAL HIPPOCAMPUS VENTRAL PALLIDUM VENTRAL SPINAL CORD VISUAL CORTEX WHITE MATTER
CORNEA HARDERIAN GLAND LENS RETINA
ADRENAL GLAND PARATHYROID GLAND PINEAL GLAND PITUITARY GLAND THYROID GLAND
BRONCHUS LARYNX LUNG NASOPHARYNX OLFACTORY EPITHELIUM TRACHEA
ESOPHAGUS LIP ORAL MUCOSA SALIVARY GLAND TONGUE
CECUM COLON DUODENUM ILEUM JEJUNUM RECTUM SMALL INTESTINE STOMACH STOMACH (LOWER) STOMACH (MIDDLE) STOMACH (UPPER)
GALLBLADDER LIVER LIVER (LOBE 1) LIVER (LOBE 4)
PANCREAS
KIDNEY KIDNEY (CORTEX) KIDNEY (MEDULLA) URINARY BLADDER
BULBOURETHRAL GLAND DUCTUS DEFERENS EPIDIDYMIS MALE PREPUTIAL GLAND PENIS PROSTATE PROSTATE (ANTERIOR) PROSTATE (VENTRAL) SEMINAL VESICLE TESTIS URETHRAL GLAND
BREAST CERVIX CLITORIS ENDOMETRIUM FALLOPIAN TUBE FEMALE PREPUTIAL GLAND OVARY PLACENTA UTERUS VAGINA
AORTA BLOOD VESSEL DIAPHRAGM HEART ATRIUM HEART MUSCLE HEART VALVE HEART WALL PERIPHERAL VASCULATURE SKELETAL MUSCLE SMOOTH MUSCLE SMOOTH MUSCLE (INTESTINE) SMOOTH MUSCLE (UTERUS)
ABDOMINAL ADIPOSE TISSUE ADIPOSE TISSUE BROWN ADIPOSE TISSUE DURA MATER EAR CANAL EAR CARTILAGE JOINT CARTILAGE MENINGES ORBITAL ADIPOSE TISSUE PERICARDIUM PERITONEUM PLEURA SUBCUTANEOUS ADIPOSE TISSUE SYNOVIAL TISSUE VAGUS NERVE
EYE LID SKIN SKIN (BACK) SKIN (GROIN)
APPENDIX BLOOD, PBMC BONE MARROW LYMPH NODE SPLEEN THYMUS TONSIL
HumanMacaqueMouseRatPig
Protein evolution
Breast & female reproductive system
Evolutionary methods
VAGINA - Expression summary
Protein expression
Vaginai

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Squamous epithelial cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:7.7 nTPM
GTEx:7.7 nTPM
FANTOM5:35.0 Scaled Tags Per Million
Macaque:9.8 nTPM
Mouse:1.8 nTPM
Rat:8.8 nTPM

VAGINA - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA079218
Squamous epithelial cells Medium


VAGINA - PROTEINTALKS DB MS
Median intensity ND
Sample Intensity
Vagina_01
ND

VAGINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

7.7
GTEx sample id Sample description nTPM
Vagina
Average nTPM: 7.7
Samples: 170

Max nTPM: 21.0
Min nTPM: 1.6
Std nTPM: 3.4
Median nTPM: 7.3
GTEX-1399S-2326-SM-5K7YV 30-39 years, female 21.0
GTEX-ZLWG-1126-SM-4WWFQ 50-59 years, female 19.9
GTEX-PWCY-1726-SM-48TD3 20-29 years, female 18.6
GTEX-12WSJ-1326-SM-5GCOB 40-49 years, female 18.5
GTEX-14PN3-1626-SM-6AJAV 60-69 years, female 18.2
GTEX-14BMU-1926-SM-5S2QC 20-29 years, female 18.0
GTEX-PWN1-2526-SM-48TDS 40-49 years, female 15.2
GTEX-1C475-0526-SM-793AC 40-49 years, female 14.8
GTEX-13PL7-2726-SM-5L3GB 60-69 years, female 14.7
GTEX-13D11-1326-SM-5IJFY 50-59 years, female 14.3
GTEX-WI4N-2626-SM-GPI8F 40-49 years, female 13.5
GTEX-11EM3-1826-SM-5A5KO 20-29 years, female 12.6
GTEX-14PJ6-1626-SM-6872D 60-69 years, female 12.3
GTEX-1IDJU-1026-SM-AHZ2U 60-69 years, female 12.2
GTEX-T6MO-1226-SM-4DM5S 40-49 years, female 12.2
GTEX-UJHI-1326-SM-4IHJO 50-59 years, female 12.2
GTEX-PX3G-2526-SM-48TZV 20-29 years, female 12.1
GTEX-13U4I-2026-SM-5LU3L 40-49 years, female 11.8
GTEX-SE5C-1126-SM-4BRWZ 40-49 years, female 11.8
GTEX-11GSP-2226-SM-5HL5Q 60-69 years, female 11.7
GTEX-1IE54-2626-SM-CMKFY 40-49 years, female 11.5
GTEX-O5YV-2226-SM-HM8V7 60-69 years, female 11.3
GTEX-11I78-2026-SM-5987C 50-59 years, female 10.8
GTEX-S7SF-1426-SM-4AT5A 20-29 years, female 10.6
GTEX-16MT8-2426-SM-GQ1DK 60-69 years, female 10.5
GTEX-183WM-2126-SM-7LG4I 70-79 years, female 10.5
GTEX-X8HC-2826-SM-46MWJ 50-59 years, female 10.4
GTEX-ZYVF-0326-SM-5GIES 50-59 years, female 10.3
GTEX-131XG-2126-SM-5DUXG 50-59 years, female 10.2
GTEX-13QBU-1726-SM-5IJFQ 40-49 years, female 10.2
GTEX-145ME-1426-SM-5RQJS 40-49 years, female 10.2
GTEX-QCQG-1226-SM-48U23 50-59 years, female 10.2
GTEX-11DXX-1726-SM-5H11T 60-69 years, female 10.1
GTEX-WEY5-0826-SM-4LMIH 40-49 years, female 10.0
GTEX-Q734-1426-SM-DTXFX 40-49 years, female 9.9
GTEX-TML8-1126-SM-4DXSS 40-49 years, female 9.9
GTEX-ZVT3-2726-SM-5GU5X 60-69 years, female 9.9
GTEX-12ZZX-1926-SM-5EGKC 40-49 years, female 9.8
GTEX-1LNCM-1026-SM-E9U5D 50-59 years, female 9.8
GTEX-11VI4-0726-SM-5GU5B 40-49 years, female 9.6
GTEX-13PVR-1426-SM-5S2PW 60-69 years, female 9.6
GTEX-OXRK-2026-SM-GOQY5 50-59 years, female 9.6
GTEX-YJ8O-1226-SM-5P9JE 40-49 years, female 9.6
GTEX-147F3-1526-SM-5MR7L 50-59 years, female 9.5
GTEX-1LGOU-1126-SM-D3LAI 20-29 years, female 9.5
GTEX-1F48J-2526-SM-7P8TU 50-59 years, female 9.4
GTEX-RWS6-1726-SM-47JXP 60-69 years, female 9.4
GTEX-1JN76-1526-SM-CNPPF 20-29 years, female 9.3
GTEX-1GN1U-2426-SM-9KNTU 50-59 years, female 9.1
GTEX-1QPFJ-1626-SM-DTX7X 30-39 years, female 9.1
GTEX-1S5ZU-2626-SM-E9TII 20-29 years, female 9.1
GTEX-OHPL-2526-SM-3MJGT 60-69 years, female 9.0
GTEX-XUZC-1226-SM-4BRVJ 30-39 years, female 8.8
GTEX-RU1J-1426-SM-46MUV 20-29 years, female 8.7
GTEX-1LVAM-1926-SM-E6CIM 50-59 years, female 8.6
GTEX-P4PP-2526-SM-3P61P 30-39 years, female 8.5
GTEX-1A8FM-2426-SM-7IGPE 50-59 years, female 8.4
GTEX-1LGRB-2126-SM-COH48 50-59 years, female 8.4
GTEX-PLZ4-2726-SM-3P61A 50-59 years, female 8.4
GTEX-ZP4G-0826-SM-4WWF3 20-29 years, female 8.4
GTEX-17F9Y-2326-SM-7DUFP 70-79 years, female 8.3
GTEX-1JN1M-2326-SM-ARZNG 60-69 years, female 8.3
GTEX-1EWIQ-2326-SM-7IGNF 70-79 years, female 8.2
GTEX-1NUQO-1826-SM-E6CQU 20-29 years, female 8.1
GTEX-W5WG-1026-SM-4LMIF 50-59 years, female 8.1
GTEX-TMMY-1926-SM-4DXUU 40-49 years, female 8.0
GTEX-113JC-1926-SM-5N9GE 50-59 years, female 7.9
GTEX-12WSD-2926-SM-5LZUH 60-69 years, female 7.9
GTEX-132AR-1626-SM-5EGHP 50-59 years, female 7.9
GTEX-146FH-2626-SM-5Q5E1 50-59 years, female 7.9
GTEX-14PKU-1326-SM-6871B 40-49 years, female 7.9
GTEX-N7MT-1926-SM-3LK5N 60-69 years, female 7.9
GTEX-XV7Q-1626-SM-4BRWC 40-49 years, female 7.9
GTEX-1QCLZ-2226-SM-DTX7R 60-69 years, female 7.8
GTEX-R45C-2226-SM-GQ1EF 60-69 years, female 7.8
GTEX-1PIEJ-1926-SM-EVYB7 20-29 years, female 7.5
GTEX-15ER7-2526-SM-7KUFW 20-29 years, female 7.4
GTEX-S4P3-1126-SM-4AD52 50-59 years, female 7.4
GTEX-WYVS-1426-SM-4ONCV 40-49 years, female 7.4
GTEX-ZVT2-0626-SM-5GICR 50-59 years, female 7.4
GTEX-ZZPU-2226-SM-5EGIV 50-59 years, female 7.4
GTEX-13N11-1526-SM-5L3FL 50-59 years, female 7.3
GTEX-146FR-2426-SM-5NQAU 60-69 years, female 7.3
GTEX-1I4MK-1726-SM-ARL7O 50-59 years, female 7.3
GTEX-U3ZN-0926-SM-4DXTU 30-39 years, female 7.3
GTEX-ZGAY-2226-SM-4YCCX 40-49 years, female 7.3
GTEX-13OVI-0926-SM-5J1MI 60-69 years, female 7.2
GTEX-14JG6-0726-SM-69LQH 30-39 years, female 7.2
GTEX-ZTPG-2226-SM-57WF9 20-29 years, female 7.2
GTEX-15SDE-1726-SM-6LPJS 50-59 years, female 7.0
GTEX-13QIC-1826-SM-5J1MY 60-69 years, female 6.9
GTEX-11XUK-1326-SM-5EQM4 40-49 years, female 6.7
GTEX-1HCU6-2326-SM-ACKXP 60-69 years, female 6.7
GTEX-TSE9-2526-SM-4DXUS 60-69 years, female 6.7
GTEX-ZXES-0626-SM-5E45P 30-39 years, female 6.7
GTEX-11P81-2126-SM-5HL6N 30-39 years, female 6.6
GTEX-1LVAN-1626-SM-CNPQ7 50-59 years, female 6.6
GTEX-QVJO-2526-SM-CYPRA 60-69 years, female 6.6
GTEX-X15G-1926-SM-4PQZQ 50-59 years, female 6.6
GTEX-1CAMS-2326-SM-793CR 40-49 years, female 6.5
GTEX-15DYW-2926-SM-6PANA 60-69 years, female 6.4
GTEX-OHPK-2526-SM-3MJH9 50-59 years, female 6.4
GTEX-OHPN-2426-SM-E9TI5 60-69 years, female 6.4
GTEX-1399U-1526-SM-5J2N7 50-59 years, female 6.3
GTEX-13FTY-2026-SM-GIN9K 40-49 years, female 6.3
GTEX-14H4A-2426-SM-664OQ 40-49 years, female 6.3
GTEX-1R9JW-1426-SM-DTX9K 30-39 years, female 6.3
GTEX-S341-1226-SM-4AD5S 40-49 years, female 6.3
GTEX-RTLS-2126-SM-GPRWH 60-69 years, female 6.2
GTEX-SN8G-2626-SM-EXUQT 50-59 years, female 6.2
GTEX-145LS-2526-SM-5TDC9 60-69 years, female 6.1
GTEX-15SB6-1426-SM-7KUEM 50-59 years, female 6.1
GTEX-1J1OQ-1826-SM-CL53R 40-49 years, female 6.1
GTEX-QDT8-2526-SM-48TYX 30-39 years, female 6.0
GTEX-13W3W-2326-SM-5LU4Y 60-69 years, female 5.9
GTEX-14A5I-2726-SM-5MR84 50-59 years, female 5.9
GTEX-ZQG8-1126-SM-51MRL 60-69 years, female 5.9
GTEX-ZV6S-1326-SM-59HJA 40-49 years, female 5.9
GTEX-Y3IK-2226-SM-4YCD4 50-59 years, female 5.8
GTEX-131YS-2426-SM-5J2OD 60-69 years, female 5.7
GTEX-18A7A-2826-SM-7LT8J 50-59 years, female 5.7
GTEX-1HCUA-1026-SM-A9SMI 50-59 years, female 5.7
GTEX-1HFI7-1126-SM-A96S5 50-59 years, female 5.7
GTEX-1F5PL-1826-SM-7P8PP 40-49 years, female 5.6
GTEX-NPJ7-2526-SM-EV79A 60-69 years, female 5.6
GTEX-16NGA-1626-SM-72D6M 40-49 years, female 5.5
GTEX-W5X1-2226-SM-GRR1G 40-49 years, female 5.5
GTEX-T2IS-1926-SM-4DM74 20-29 years, female 5.3
GTEX-1MCYP-1326-SM-EV7AD 20-29 years, female 5.2
GTEX-1I1GT-1226-SM-B2LVK 60-69 years, female 5.1
GTEX-1LH75-1726-SM-DHXKZ 50-59 years, female 5.0
GTEX-P78B-2226-SM-3P5ZZ 40-49 years, female 5.0
GTEX-ZVZQ-2726-SM-GPRY1 60-69 years, female 5.0
GTEX-14DAQ-2326-SM-5S2QX 60-69 years, female 4.9
GTEX-1AMFI-1526-SM-73KVY 50-59 years, female 4.9
GTEX-1GN1W-1526-SM-7P8TG 50-59 years, female 4.9
GTEX-S4UY-1026-SM-4AD53 40-49 years, female 4.9
GTEX-XUW1-0326-SM-4BOOR 50-59 years, female 4.9
GTEX-14PJM-2926-SM-69LOE 50-59 years, female 4.7
GTEX-11TTK-2726-SM-5GU58 60-69 years, female 4.6
GTEX-YFC4-2926-SM-5IFJ8 40-49 years, female 4.6
GTEX-1HBPM-2726-SM-9WYUA 60-69 years, female 4.5
GTEX-1J8EW-2526-SM-CKZO2 60-69 years, female 4.5
GTEX-WRHU-2926-SM-4MVNQ 50-59 years, female 4.5
GTEX-ZYY3-2626-SM-5N9DH 60-69 years, female 4.5
GTEX-15UF6-2126-SM-6M46Z 70-79 years, female 4.4
GTEX-WYBS-2826-SM-GOQYI 60-69 years, female 4.4
GTEX-ZE7O-2426-SM-57WD7 50-59 years, female 4.4
GTEX-17JCI-2526-SM-7DHLB 60-69 years, female 4.3
GTEX-18D9A-1026-SM-7KFRU 30-39 years, female 4.3
GTEX-1HBPH-2926-SM-9WPNX 40-49 years, female 4.3
GTEX-1QP28-1426-SM-EVR4E 50-59 years, female 4.2
GTEX-RNOR-2526-SM-F21KT 50-59 years, female 4.1
GTEX-XYKS-2826-SM-H7OG8 60-69 years, female 4.1
GTEX-ZC5H-2226-SM-4WAWS 40-49 years, female 4.1
GTEX-1GMR8-2526-SM-7RHI9 50-59 years, female 4.0
GTEX-1MA7W-1226-SM-HL9SB 20-29 years, female 4.0
GTEX-ZAK1-2426-SM-EXOHM 50-59 years, female 3.8
GTEX-14AS3-1726-SM-5RQJV 40-49 years, female 3.3
GTEX-15SHU-2926-SM-7KUKT 40-49 years, female 3.3
GTEX-11EMC-1926-SM-5A5JU 60-69 years, female 3.2
GTEX-1MCC2-1126-SM-EVYD6 30-39 years, female 3.2
GTEX-ZAJG-2926-SM-5HL8P 50-59 years, female 3.2
GTEX-1ICG6-1626-SM-ARL81 70-79 years, female 3.1
GTEX-1JMQL-2326-SM-CNNPV 50-59 years, female 3.1
GTEX-1GF9U-1926-SM-7P8TZ 40-49 years, female 3.0
GTEX-1117F-2526-SM-5GZY6 60-69 years, female 2.4
GTEX-139D8-2626-SM-GJ3QN 30-39 years, female 2.1
GTEX-16NPV-2526-SM-6M483 50-59 years, female 2.1
GTEX-1LKK1-1826-SM-GNIPA 50-59 years, female 1.6
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VAGINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

35.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Vagina
Scaled Tags Per Million: 35.0
FF:10204-103F6 68 years, female 35.0

VAGINA - Macaque RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

9.8
Macaque sample Sample description nTPM
Vagina
nTPM: 9.8
Samples: 1

Max nTPM: 9.8
Min nTPM: 9.8
Sample A 9.8

VAGINA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1.8
Mouse sample Sample description nTPM
Vagina
nTPM: 1.8
Samples: 2

Max nTPM: 2.3
Min nTPM: 1.3
Sample A 1.3
Sample B 2.3

VAGINA - Rat RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

8.8
Rat sample Sample description nTPM
Vagina
nTPM: 8.8
Samples: 2

Max nTPM: 10.7
Min nTPM: 6.8
Sample A 6.8
Sample A 10.7

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