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  • EIF5
BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Brain methods
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:67.6 nTPM
HPA Brain:113.6 nTPM
GTEx:67.6 nTPM
FANTOM5:91.3 Scaled Tags Per Million
Pig:79.9 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

113.6
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 99.6
1981 Female, age 72, midline 133.4
2048 Male, age 55, midline 112.0
2565 Male, age 75, midline 91.3
2816 Male, age 47, midline 80.6
2194 Female, age 79, both hemispheres 80.5
Cervical spinal cord, dorsal horn
nTPM: 113.6
2173 Female, age 72, unknown 156.0
2296 Male, age 66, both hemispheres 141.9
2069 Male, age 47, both hemispheres 122.0
1877 Male, age 55, unknown 95.8
2297 Male, age 75, both hemispheres 92.5
2721 Male, age 90, both hemispheres 73.0
Cervical spinal cord, ventral horn
nTPM: 104.9
2809 Male, age 90, both hemispheres 134.6
2098 Female, age 72, unknown 120.1
2480 Male, age 75, both hemispheres 119.4
2068 Male, age 55, unknown 99.2
2295 Male, age 66, both hemispheres 88.6
2820 Female, age 79, both hemispheres 67.8

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

67.6
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 67.6
Samples: 204

Max nTPM: 159.4
Min nTPM: 38.4
Std nTPM: 15.7
Median nTPM: 65.1
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 159.4
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 120.0
GTEX-1JMQL-0011-R9b-SM-G8LLH 50-59 years, female 116.6
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 115.1
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 110.2
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 103.9
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 102.2
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 99.0
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 98.8
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 93.8
GTEX-ZAJG-0011-R9a-SM-GNTAY 50-59 years, female 91.5
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 91.1
GTEX-1JN6P-0011-R9a-SM-G8LM9 60-69 years, male 89.5
GTEX-15SHU-0011-R9a-SM-GNIOE 40-49 years, female 88.8
GTEX-WVLH-0011-R9A-SM-H7OHH 50-59 years, male 88.4
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 88.2
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 87.2
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 85.9
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 84.8
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 84.5
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 83.4
GTEX-111VG-0011-R9b-SM-GHWOB 60-69 years, male 83.2
GTEX-12696-0011-R9a-SM-GHWPX 60-69 years, male 83.0
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 82.8
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 82.8
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 82.5
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 82.4
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 82.0
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 82.0
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 82.0
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 80.8
GTEX-1JMQJ-0011-R9b-SM-G8OKN 50-59 years, male 80.6
GTEX-11GSO-0011-R9b-SM-GI4VN 60-69 years, male 80.5
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 80.5
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 80.0
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 79.9
GTEX-11NV4-0011-R9a-SM-GHWPP 60-69 years, male 79.3
GTEX-1QMI2-0011-R9a-SM-G8ON7 60-69 years, male 79.1
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 78.8
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 78.7
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 78.2
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 78.2
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 78.0
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 77.9
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 77.9
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 77.8
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 77.3
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 77.2
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 77.0
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 76.6
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 76.4
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 76.3
GTEX-1PIIG-0011-R9b-SM-G8OLU 30-39 years, male 76.2
GTEX-12584-0011-R9b-SM-GI4WC 40-49 years, male 76.1
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 76.1
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 75.9
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 75.7
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 75.6
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 75.1
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 75.0
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 74.6
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 73.2
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 73.2
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 73.2
GTEX-1RAZS-0011-R9b-SM-G8OMS 50-59 years, male 73.1
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 72.9
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 72.7
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 72.6
GTEX-13112-0011-R9b-SM-GHWOV 50-59 years, male 72.4
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 72.1
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 72.1
GTEX-1A8G6-0011-R9a-SM-GOQZR 60-69 years, male 72.0
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 71.8
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 71.4
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 71.2
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 70.8
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 70.6
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 70.4
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 69.9
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 69.5
GTEX-11NUK-0011-R9a-SM-GI4XG 50-59 years, male 69.0
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 69.0
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 68.6
GTEX-13G51-0011-R9b-SM-GHWPS 60-69 years, male 68.4
GTEX-1LG7Y-0011-R9a-SM-G8LMA 50-59 years, male 68.2
GTEX-1RDX4-0011-R9b-SM-G8LMG 50-59 years, female 68.1
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 68.0
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 67.9
GTEX-14JFF-0011-R9b-SM-G9ERJ 60-69 years, male 67.6
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 66.8
GTEX-113JC-0011-R9a-SM-H6Q8K 50-59 years, female 66.7
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 66.2
GTEX-1N5O9-0011-R9a-SM-G8LLD 60-69 years, male 66.0
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 65.9
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 65.9
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 65.8
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 65.5
GTEX-117YW-0011-R9a-SM-GHWPQ 50-59 years, male 65.4
GTEX-1IL2U-0011-R9a-SM-GPRYC 60-69 years, male 65.4
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 65.3
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 65.3
GTEX-1PPGY-0011-R9a-SM-G8LMR 60-69 years, male 65.2
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 65.0
GTEX-1JMPZ-0011-R9a-SM-G8OLH 30-39 years, male 64.9
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 64.7
GTEX-1QP6S-0011-R9a-SM-G8LMO 40-49 years, male 64.4
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 64.3
GTEX-11DXW-0011-R9a-SM-GHWOE 40-49 years, male 64.2
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 64.2
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 64.1
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 64.0
GTEX-1LSVX-0011-R9b-SM-G8LL2 60-69 years, male 64.0
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 64.0
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 63.5
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 62.7
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 62.5
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 62.3
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 62.2
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 62.0
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 61.9
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 61.9
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 61.8
GTEX-16GPK-0011-R9a-SM-GPI9P 60-69 years, male 61.4
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 61.2
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 61.1
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 61.1
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 61.1
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 60.9
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 60.7
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 60.7
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 60.7
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 60.5
GTEX-1J8Q2-0011-R9b-SM-GPRYH 60-69 years, male 60.5
GTEX-11ZU8-0011-R9b-SM-GHWOL 60-69 years, male 60.4
GTEX-13QIC-0011-R9a-SM-GI4WO 60-69 years, female 60.3
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 60.3
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 60.2
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 60.1
GTEX-15UF6-0011-R9b-SM-GOQZG 70-79 years, female 59.8
GTEX-1O9I2-0011-R9b-SM-G8OKW 50-59 years, male 59.7
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 59.5
GTEX-12WSI-0011-R9b-SM-GHWOU 50-59 years, male 59.3
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 59.2
GTEX-ZZPT-0011-R9a-SM-GOQYS 50-59 years, male 59.1
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 58.7
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 58.6
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 58.6
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 58.5
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 58.3
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 58.3
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 58.2
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 58.1
GTEX-NPJ7-0011-R9a-SM-G8W5X 60-69 years, female 58.1
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 57.9
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 57.9
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 57.8
GTEX-1R9PO-0011-R9a-SM-G8LKP 60-69 years, female 57.5
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 57.2
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 56.8
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 56.4
GTEX-1KD4Q-0011-R9a-SM-G8LLU 40-49 years, male 56.1
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 55.8
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 55.6
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 55.4
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 55.4
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 55.3
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 55.2
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 55.2
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 55.0
GTEX-1NV8Z-0011-R9b-SM-G8OME 60-69 years, male 55.0
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 53.8
GTEX-1269C-0011-R9b-SM-GI4WM 60-69 years, female 53.7
GTEX-117XS-0011-R9b-SM-GHWOG 60-69 years, male 53.5
GTEX-ZV68-0011-R9b-SM-GNTB9 50-59 years, female 53.4
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 53.3
GTEX-1POEN-0011-R9b-SM-G8LL1 30-39 years, female 53.3
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 53.2
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 53.1
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 52.9
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 52.5
GTEX-1JMOU-0011-R9b-SM-EY5YI 60-69 years, female 51.9
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 51.8
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 51.5
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 50.7
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 50.1
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 49.4
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 49.3
GTEX-X4EP-0011-R9B-SM-4QASI 60-69 years, female 49.1
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 48.0
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 47.7
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 47.5
GTEX-1212Z-0011-R9b-SM-GHWPM 60-69 years, male 47.3
GTEX-1MCQQ-0011-R9b-SM-G8OKM 60-69 years, male 47.0
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 46.8
GTEX-1PWST-0011-R9a-SM-G8OMQ 70-79 years, male 46.0
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 45.5
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 45.2
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 44.1
GTEX-1J1OQ-0011-R9b-SM-GRR22 40-49 years, female 44.0
GTEX-1LKK1-0011-R9a-SM-G8OLY 50-59 years, female 43.8
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 42.5
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 39.9
GTEX-1LH75-0011-R9b-SM-EY5Y9 50-59 years, female 39.7
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 38.4
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

91.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 91.3
FF:10159-103A6 76 years, female 93.5
FF:10181-103D1 60 years, female 89.0

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

79.9
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 63.7
Samples: 4

Max nTPM: 75.2
Min nTPM: 48.0
Sample A Female 75.2
Sample B Female 67.4
Sample C Male 48.0
Sample D Male 64.0
Ventral spinal cord
nTPM: 79.9
Samples: 4

Max nTPM: 91.6
Min nTPM: 64.0
Sample A Female 90.1
Sample B Female 91.6
Sample C Male 64.0
Sample D Male 73.8

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