A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
10.8
nTPM
Monaco:
38.4
nTPM
Schmiedel:
20.0
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
10.8
HPA sample
nTPM
Classical monocyte nTPM: 5.7
Samples: 6
Max nTPM: 7.7
Min nTPM: 1.8
P10809_1003
7.7
P10809_1020
6.5
P10809_1039
1.8
P10809_1058
5.1
P10809_1080
6.3
P10809_1107
6.9
Intermediate monocyte nTPM: 7.2
Samples: 6
Max nTPM: 10.4
Min nTPM: 3.7
P10809_1004
10.4
P10809_1023
3.7
P10809_1042
6.7
P10809_1061
8.1
P10809_1081
6.4
P10809_1108
8.0
Non-classical monocyte nTPM: 10.8
Samples: 5
Max nTPM: 32.4
Min nTPM: 2.0
P10809_1005
10.3
P10809_1053
2.0
P10809_1072
32.4
P10809_1082
3.3
P10809_1109
6.1
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
38.4
Monaco sample
nTPM
Classical monocyte nTPM: 31.0
Samples: 4
Max nTPM: 43.1
Min nTPM: 23.0
RHH5313_R3680
30.3
RHH5221_R3593
43.1
RHH5250_R3622
23.0
RHH5279_R3651
27.6
Intermediate monocyte nTPM: 33.1
Samples: 4
Max nTPM: 43.2
Min nTPM: 27.4
RHH5314_R3681
29.3
RHH5222_R3594
43.2
RHH5251_R3623
27.4
RHH5280_R3652
32.3
Non-classical monocyte nTPM: 38.5
Samples: 4
Max nTPM: 47.2
Min nTPM: 33.4
RHH5315_R3682
33.4
RHH5223_R3595
47.2
RHH5252_R3624
33.7
RHH5281_R3653
39.5
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
20.0
Schmiedel sample id
TPM
Classical monocyte TPM: 11.9
Samples: 91
Max TPM: 27.4
Min TPM: 2.4
MONOCYTES_1
27.4
MONOCYTES_2
25.4
MONOCYTES_3
23.8
MONOCYTES_4
22.7
MONOCYTES_5
22.0
MONOCYTES_6
21.4
MONOCYTES_7
21.3
MONOCYTES_8
20.8
MONOCYTES_9
20.6
MONOCYTES_10
20.4
MONOCYTES_11
20.3
MONOCYTES_12
20.0
MONOCYTES_13
20.0
MONOCYTES_14
18.5
MONOCYTES_15
18.4
MONOCYTES_16
18.1
MONOCYTES_17
18.0
MONOCYTES_18
17.9
MONOCYTES_19
17.5
MONOCYTES_20
17.4
MONOCYTES_21
17.3
MONOCYTES_22
17.0
MONOCYTES_23
16.8
MONOCYTES_24
16.7
MONOCYTES_25
16.6
MONOCYTES_26
16.4
MONOCYTES_27
16.4
MONOCYTES_28
16.1
MONOCYTES_29
15.9
MONOCYTES_30
15.4
MONOCYTES_31
15.1
MONOCYTES_32
14.7
MONOCYTES_33
14.2
MONOCYTES_34
14.2
MONOCYTES_35
13.4
MONOCYTES_36
12.6
MONOCYTES_37
12.6
MONOCYTES_38
12.5
MONOCYTES_39
12.1
MONOCYTES_40
11.7
MONOCYTES_41
11.6
MONOCYTES_42
11.3
MONOCYTES_43
11.1
MONOCYTES_44
11.0
MONOCYTES_45
10.9
MONOCYTES_46
10.8
MONOCYTES_47
10.3
MONOCYTES_48
10.3
MONOCYTES_49
10.2
MONOCYTES_50
10.1
MONOCYTES_51
9.9
MONOCYTES_52
9.5
MONOCYTES_53
9.4
MONOCYTES_54
9.3
MONOCYTES_55
9.3
MONOCYTES_56
9.2
MONOCYTES_57
9.1
MONOCYTES_58
9.0
MONOCYTES_59
8.2
MONOCYTES_60
8.2
MONOCYTES_61
8.1
MONOCYTES_62
8.0
MONOCYTES_63
8.0
MONOCYTES_64
8.0
MONOCYTES_65
8.0
MONOCYTES_66
7.5
MONOCYTES_67
7.4
MONOCYTES_68
7.3
MONOCYTES_69
7.3
MONOCYTES_70
7.3
MONOCYTES_71
7.0
MONOCYTES_72
6.9
MONOCYTES_73
6.5
MONOCYTES_74
6.0
MONOCYTES_75
6.0
MONOCYTES_76
5.7
MONOCYTES_77
5.6
MONOCYTES_78
5.3
MONOCYTES_79
5.2
MONOCYTES_80
5.0
MONOCYTES_81
5.0
MONOCYTES_82
4.7
MONOCYTES_83
4.4
MONOCYTES_84
4.1
MONOCYTES_85
4.0
MONOCYTES_86
3.8
MONOCYTES_87
3.6
MONOCYTES_88
3.3
MONOCYTES_89
3.2
MONOCYTES_90
2.6
MONOCYTES_91
2.4
Show allShow less
Non-classical monocyte TPM: 20.1
Samples: 90
Max TPM: 51.1
Min TPM: 1.4
M2_1
51.1
M2_2
50.2
M2_3
43.3
M2_4
43.2
M2_5
41.5
M2_6
41.4
M2_7
39.5
M2_8
38.7
M2_9
38.4
M2_10
37.6
M2_11
36.8
M2_12
36.5
M2_13
36.1
M2_14
35.4
M2_15
35.3
M2_16
33.0
M2_17
32.9
M2_18
32.2
M2_19
31.7
M2_20
31.1
M2_21
29.9
M2_22
29.7
M2_23
29.3
M2_24
28.3
M2_25
26.1
M2_26
25.7
M2_27
25.3
M2_28
25.0
M2_29
24.3
M2_30
24.0
M2_31
23.7
M2_32
23.7
M2_33
23.6
M2_34
23.5
M2_35
23.0
M2_36
22.9
M2_37
22.3
M2_38
21.5
M2_39
20.9
M2_40
20.3
M2_41
20.0
M2_42
19.7
M2_43
19.6
M2_44
18.7
M2_45
18.6
M2_46
18.0
M2_47
17.3
M2_48
16.6
M2_49
16.4
M2_50
16.0
M2_51
15.9
M2_52
15.6
M2_53
15.2
M2_54
15.0
M2_55
14.9
M2_56
14.5
M2_57
14.4
M2_58
13.8
M2_59
13.6
M2_60
13.0
M2_61
13.0
M2_62
12.8
M2_63
12.6
M2_64
12.6
M2_65
12.2
M2_66
11.8
M2_67
11.5
M2_68
10.0
M2_69
9.9
M2_70
9.4
M2_71
9.3
M2_72
8.4
M2_73
8.1
M2_74
6.6
M2_75
6.4
M2_76
6.0
M2_77
5.9
M2_78
5.7
M2_79
5.6
M2_80
5.4
M2_81
4.9
M2_82
4.8
M2_83
4.2
M2_84
4.1
M2_85
4.0
M2_86
3.7
M2_87
3.5
M2_88
3.4
M2_89
1.6
M2_90
1.4
Show allShow less
We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
The Human Protein Atlas project is funded
