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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
Brain methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:27.1 nTPM
HPA Brain:190.3 nTPM
GTEx:27.1 nTPM
FANTOM5:58.1 Scaled Tags Per Million
Pig:74.9 nTPM
Mouse:67.5 nTPM
Allen mouse:2.5 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

190.3
Sample id Sample description nTPM
Amygdala
nTPM: 190.3
2514 Male, age 75, right hemisphere 224.3
1987 Female, age 91, left hemisphere 195.3
2814 Male, age 76, right hemisphere 181.8
2517 Female, age 94, left hemisphere 178.8
2695 Female, age 67, right hemisphere 171.4
Basal amygdala
nTPM: 167.5
2609 Male, age 75, right hemisphere 218.8
2110 Male, age 80, left hemisphere 161.8
1955 Male, age 76, both hemispheres 160.3
2243 Female, age 91, right hemisphere 159.2
2827 Female, age 67, right hemisphere 156.2
2685 Female, age 94, left hemisphere 149.0
Central amygdala
nTPM: 177.9
2826 Female, age 94, left hemisphere 198.6
2515 Male, age 75, right hemisphere 195.4
2239 Male, age 80, left hemisphere 167.4
2701 Female, age 91, right hemisphere 164.8
1905 Male, age 76, both hemispheres 163.4
Corticomedial amygdala
nTPM: 164.1
2428 Male, age 75, right hemisphere 209.1
2829 Male, age 80, left hemisphere 169.6
2240 Male, age 76, both hemispheres 166.9
2429 Female, age 94, left hemisphere 162.5
2242 Female, age 91, right hemisphere 149.1
2535 Female, age 67, right hemisphere 127.5
Lateral amygdala
nTPM: 174.2
2516 Male, age 75, right hemisphere 236.2
2830 Female, age 67, right hemisphere 185.8
2256 Male, age 80, left hemisphere 163.2
1883 Male, age 76, both hemispheres 162.5
2534 Female, age 94, left hemisphere 154.3
2255 Female, age 91, right hemisphere 143.5

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

27.1
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 27.1
Samples: 181

Max nTPM: 60.1
Min nTPM: 12.0
Std nTPM: 7.5
Median nTPM: 25.8
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 60.1
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 55.1
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 54.1
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 48.2
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 46.7
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 45.7
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 44.0
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 41.1
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 40.9
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 40.3
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 39.7
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 38.5
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 38.1
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 37.7
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 37.5
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 36.8
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 35.6
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 35.3
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 35.0
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 34.9
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 34.7
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 34.3
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 34.1
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 34.1
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 33.7
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 33.6
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 33.4
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 33.4
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 33.4
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 33.1
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 32.9
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 32.6
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 32.5
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 32.2
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 32.2
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 32.2
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 32.0
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 32.0
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 32.0
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 31.9
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 31.8
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 31.7
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 31.7
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 31.3
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 31.2
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 31.0
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 30.9
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 30.7
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 30.5
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 30.5
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 30.0
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 29.9
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 29.9
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 29.6
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 29.6
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 29.4
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 29.3
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 29.1
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 29.0
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 28.9
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 28.6
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 28.5
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 28.4
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 28.4
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 28.3
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 28.3
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 28.2
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 28.1
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 28.1
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 28.1
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 28.0
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 27.7
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 27.6
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 27.6
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 27.5
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 27.5
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 27.5
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 27.4
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 27.4
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 27.3
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 27.3
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 27.1
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 27.0
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 26.8
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 26.4
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 26.4
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 25.9
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 25.8
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 25.8
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 25.8
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 25.8
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 25.7
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 25.7
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 25.7
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 25.7
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 25.6
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 25.6
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 25.5
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 25.5
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 25.5
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 25.4
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 25.2
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 25.1
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 25.1
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 25.0
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 24.9
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 24.7
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 24.7
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 24.6
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 24.6
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 24.4
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 24.3
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 24.3
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 24.2
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 24.2
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 24.1
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 24.0
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 23.9
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 23.9
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 23.8
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 23.7
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 23.7
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 23.7
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 23.6
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 23.6
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 23.6
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 23.6
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 23.2
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 23.2
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 23.0
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 23.0
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 22.9
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 22.8
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 22.7
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 22.6
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 22.5
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 22.5
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 22.4
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 22.4
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 22.3
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 22.1
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 22.1
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 22.0
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 22.0
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 21.7
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 21.7
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 21.6
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 21.6
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 21.6
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 21.6
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 21.3
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 20.9
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 20.8
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 20.1
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 20.1
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 20.0
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 19.6
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 19.4
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 19.4
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 19.3
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 18.7
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 18.7
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 18.4
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 18.4
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 18.3
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 17.9
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 17.9
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 17.5
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 17.3
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 16.9
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 16.9
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 16.7
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 16.2
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 15.7
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 15.4
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 15.3
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 15.3
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 14.9
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 12.8
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 12.0
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 12.0
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

58.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 58.1
FF:10151-102I7 76 years, female 58.1

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

74.9
Pig sample Sample description nTPM
Amygdala
nTPM: 74.9
Samples: 4

Max nTPM: 85.3
Min nTPM: 61.4
Sample A Female 81.7
Sample B Female 85.3
Sample C Male 61.4
Sample D Male 71.3

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

67.5
Mouse sample Sample description nTPM
Amygdala
nTPM: 67.5
Samples: 4

Max nTPM: 68.6
Min nTPM: 64.5
Sample A Male 68.6
Sample B Male 68.6
Sample C Female 64.5
Sample D Female 68.3

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

2.5
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 2.5
113 Antisense, RP_Baylor_102635, Mouse strain C57BL/6J (56 days, male) 2.5
114 Antisense, RP_Baylor_102635, Mouse strain C57BL/6J (56 days, male) 0.0

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