MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:21.3 nTPM
HPA Brain:187.6 nTPM
GTEx:21.3 nTPM
FANTOM5:56.3 Scaled Tags Per Million
Pig:101.3 nTPM
Mouse:85.8 nTPM
Allen mouse:0.9 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 187.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 163.4
2019 Male, age 18, unknown 206.1
2586 Male, age 75, left hemisphere 191.9
1827 Male, age 72, unknown 162.4
1833 Male, age 53, unknown 162.4
2828 Female, age 72, unknown 155.8
2666 Male, age 74, left hemisphere 154.0
1830 Male, age 51, unknown 151.5
1870 Female, age 42, unknown 150.7
2219 Male, age 76, both hemispheres 150.4
2411 Female, age 72, unknown 149.2
Dorsal raphe nucleus
nTPM: 182.5
2016 Female, age 72, unknown 218.8
2298 Female, age 72, unknown 188.3
1828 Male, age 53, unknown 178.2
2047 Male, age 72, unknown 169.1
2750 Male, age 76, both hemispheres 157.9
Inferior colliculus
nTPM: 167.6
1890 Male, age 53, unknown 177.1
2097 Female, age 72, unknown 173.2
1848 Female, age 42, unknown 162.9
2849 Male, age 72, unknown 157.2
Median raphe nucleus
nTPM: 177.3
2220 Male, age 76, midline 177.3
Periaquaductal grey, anterior
nTPM: 148.0
2502 Female, age 75, unknown 169.0
1795 Male, age 51, unknown 147.1
1947 Male, age 18, unknown 127.8
Periaquaductal grey, dorsal
nTPM: 186.9
2850 Male, age 76, both hemispheres 213.8
1840 Male, age 53, unknown 203.8
1831 Male, age 72, unknown 170.5
2464 Female, age 72, unknown 159.3
Periaquaductal grey, lateral
nTPM: 159.9
2140 Male, age 76, both hemispheres 194.2
2053 Male, age 18, unknown 150.0
2272 Male, age 74, both hemispheres 135.6
Pretectal area
nTPM: 174.1
1944 Female, age 72, unknown 200.8
1816 Male, age 51, unknown 196.5
1817 Female, age 42, unknown 195.9
1815 Male, age 53, unknown 192.9
2007 Male, age 72, unknown 187.9
2273 Male, age 74, both hemispheres 166.7
2667 Female, age 75, unknown 164.6
2224 Female, age 72, unknown 160.9
2407 Male, age 75, both hemispheres 156.1
2316 Male, age 76, right hemisphere 147.2
2825 Male, age 18, unknown 145.5
Red nucleus
nTPM: 180.5
1821 Female, age 72, unknown 208.2
2785 Male, age 18, unknown 199.8
2503 Female, age 72, unknown 195.8
2588 Male, age 74, left hemisphere 192.3
1904 Male, age 53, unknown 191.0
1954 Female, age 42, unknown 182.5
1865 Male, age 51, unknown 178.8
2227 Male, age 72, unknown 170.7
2769 Male, age 72, unknown 166.9
2725 Female, age 75, unknown 166.0
2823 Male, age 76, right hemisphere 159.0
2584 Male, age 75, left hemisphere 155.2
Substantia nigra
nTPM: 187.6
1916 Female, age 42, unknown 235.6
2699 Male, age 18, unknown 208.3
2241 Male, age 72, unknown 205.5
1889 Female, age 72, unknown 197.5
2409 Female, age 72, unknown 197.0
1851 Male, age 51, unknown 193.4
1941 Male, age 53, unknown 163.6
2590 Female, age 75, unknown 159.8
2665 Male, age 74, both hemispheres 158.7
2583 Male, age 75, right hemisphere 156.5
Superior colliculus
nTPM: 173.2
1995 Male, age 72, unknown 202.5
2668 Female, age 75, unknown 198.5
1913 Female, age 42, unknown 181.8
2664 Male, age 75, both hemispheres 181.3
2087 Female, age 72, unknown 172.2
2587 Male, age 74, left hemisphere 168.6
1895 Male, age 76, right hemisphere 158.3
2261 Male, age 18, unknown 157.0
1839 Male, age 51, unknown 156.1
1796 Male, age 53, unknown 155.2
Ventral tegmental area
nTPM: 170.0
2410 Female, age 72, unknown 179.6
1915 Female, age 42, unknown 172.6
1942 Male, age 51, unknown 171.0
2218 Male, age 76, both hemispheres 169.2
2223 Female, age 72, unknown 168.9
2021 Male, age 53, unknown 158.5

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 21.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 21.3
Samples: 183

Max nTPM: 43.5
Min nTPM: 11.9
Std nTPM: 4.8
Median nTPM: 20.7
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 43.5
GTEX-1LKK1-0011-R2b-SM-G8OLT 50-59 years, female 36.4
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 32.6
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 32.4
GTEX-14BIN-0011-R2a-SM-5S2RJ 50-59 years, female 32.1
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 32.0
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 31.7
GTEX-11UD1-0011-R2b-SM-5BC6O 40-49 years, female 31.4
GTEX-11ZTS-0011-R2b-SM-5BC75 60-69 years, female 30.9
GTEX-1192X-0011-R2b-SM-GI4VV 50-59 years, male 30.6
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 30.6
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 56.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 56.3
FF:10158-103A5 76 years, female 56.3

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 101.3
Pig sample Sample description nTPM
Substantia nigra
nTPM: 94.1
Samples: 4

Max nTPM: 129.5
Min nTPM: 62.8
Sample A Female 129.5
Sample B Female 86.9
Sample C Male 97.2
Sample D Male 62.8
Midbrain
nTPM: 101.3
Samples: 4

Max nTPM: 118.8
Min nTPM: 74.3
Sample A Female 114.7
Sample B Female 97.4
Sample C Male 118.8
Sample D Male 74.3
Periaqueductal gray
nTPM: 93.4
Samples: 3

Max nTPM: 96.1
Min nTPM: 88.5
Sample B Female 88.5
Sample C Male 95.6
Sample D Male 96.1
Superior colliculi
nTPM: 90.5
Samples: 4

Max nTPM: 115.4
Min nTPM: 76.3
Sample A Female 83.2
Sample B Female 76.3
Sample C Male 115.4
Sample D Male 87.2

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 85.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 85.9
Samples: 4

Max nTPM: 92.8
Min nTPM: 81.9
Sample A Male 82.8
Sample B Male 92.8
Sample C Female 85.9
Sample D Female 81.9

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.9
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.9
113 Antisense, RP_Baylor_102635, Mouse strain C57BL/6J (56 days, male) 1.9
114 Antisense, RP_Baylor_102635, Mouse strain C57BL/6J (56 days, male) 0.6
115 Sense, RPS_Baylor_36953, Mouse strain C57BL/6J (56 days, male) 0.0

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