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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Brain methods
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:68.5 nTPM
HPA Brain:42.1 nTPM
GTEx:68.5 nTPM
FANTOM5:36.2 Scaled Tags Per Million
Pig:40.8 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

42.1
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 33.0
1981 Female, age 72, midline 48.7
2565 Male, age 75, midline 32.3
2048 Male, age 55, midline 30.7
2194 Female, age 79, both hemispheres 26.7
2816 Male, age 47, midline 26.6
Cervical spinal cord, dorsal horn
nTPM: 33.5
2173 Female, age 72, unknown 51.2
2069 Male, age 47, both hemispheres 39.5
2721 Male, age 90, both hemispheres 37.7
1877 Male, age 55, unknown 30.4
2297 Male, age 75, both hemispheres 21.3
2296 Male, age 66, both hemispheres 20.9
Cervical spinal cord, ventral horn
nTPM: 42.1
2098 Female, age 72, unknown 71.0
2809 Male, age 90, both hemispheres 52.7
2295 Male, age 66, both hemispheres 50.1
2480 Male, age 75, both hemispheres 27.9
2068 Male, age 55, unknown 27.4
2820 Female, age 79, both hemispheres 23.2

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

68.5
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 68.5
Samples: 204

Max nTPM: 606.3
Min nTPM: 22.3
Std nTPM: 46.9
Median nTPM: 61.1
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 606.3
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 198.1
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 189.9
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 182.9
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 163.7
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 153.4
GTEX-X4EP-0011-R9B-SM-4QASI 60-69 years, female 146.3
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 133.0
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 123.1
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 117.2
GTEX-NPJ7-0011-R9a-SM-G8W5X 60-69 years, female 116.9
GTEX-13QIC-0011-R9a-SM-GI4WO 60-69 years, female 115.8
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 114.0
GTEX-ZZPT-0011-R9a-SM-GOQYS 50-59 years, male 106.9
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 106.2
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 105.8
GTEX-1LH75-0011-R9b-SM-EY5Y9 50-59 years, female 105.4
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 103.1
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 101.9
GTEX-1QMI2-0011-R9a-SM-G8ON7 60-69 years, male 98.0
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 97.3
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 95.5
GTEX-1PIIG-0011-R9b-SM-G8OLU 30-39 years, male 95.2
GTEX-12696-0011-R9a-SM-GHWPX 60-69 years, male 94.7
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 94.0
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 93.4
GTEX-1JMOU-0011-R9b-SM-EY5YI 60-69 years, female 93.3
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 93.1
GTEX-11NV4-0011-R9a-SM-GHWPP 60-69 years, male 90.4
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 89.5
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 87.2
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 87.2
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 86.4
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 85.4
GTEX-13G51-0011-R9b-SM-GHWPS 60-69 years, male 83.8
GTEX-1212Z-0011-R9b-SM-GHWPM 60-69 years, male 83.6
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 83.0
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 81.1
GTEX-1JMQJ-0011-R9b-SM-G8OKN 50-59 years, male 81.1
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 80.9
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 80.0
GTEX-1NV8Z-0011-R9b-SM-G8OME 60-69 years, male 79.6
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 79.5
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 78.6
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 77.2
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 77.2
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 77.1
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 76.5
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 76.3
GTEX-ZAJG-0011-R9a-SM-GNTAY 50-59 years, female 75.3
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 74.6
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 74.1
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 73.6
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 73.3
GTEX-1JMQL-0011-R9b-SM-G8LLH 50-59 years, female 73.1
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 72.9
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 72.9
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 72.8
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 72.5
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 72.0
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 71.6
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 71.6
GTEX-1JMPZ-0011-R9a-SM-G8OLH 30-39 years, male 71.4
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 71.2
GTEX-1IL2U-0011-R9a-SM-GPRYC 60-69 years, male 71.1
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 70.7
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 70.5
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 70.4
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 70.3
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 70.0
GTEX-16GPK-0011-R9a-SM-GPI9P 60-69 years, male 70.0
GTEX-15SHU-0011-R9a-SM-GNIOE 40-49 years, female 69.7
GTEX-1PWST-0011-R9a-SM-G8OMQ 70-79 years, male 69.6
GTEX-1MCQQ-0011-R9b-SM-G8OKM 60-69 years, male 69.4
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 69.2
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 69.2
GTEX-1LG7Y-0011-R9a-SM-G8LMA 50-59 years, male 69.2
GTEX-1O9I2-0011-R9b-SM-G8OKW 50-59 years, male 68.5
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 68.4
GTEX-1JN6P-0011-R9a-SM-G8LM9 60-69 years, male 68.4
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 68.3
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 67.9
GTEX-11DXW-0011-R9a-SM-GHWOE 40-49 years, male 67.8
GTEX-117XS-0011-R9b-SM-GHWOG 60-69 years, male 67.5
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 67.5
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 66.7
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 66.4
GTEX-1LSVX-0011-R9b-SM-G8LL2 60-69 years, male 66.2
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 65.7
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 65.7
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 65.0
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 64.9
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 64.5
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 64.2
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 64.0
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 63.1
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 63.1
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 63.0
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 62.4
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 61.8
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 61.5
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 61.3
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 61.0
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 60.9
GTEX-1J1OQ-0011-R9b-SM-GRR22 40-49 years, female 60.5
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 60.3
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 60.3
GTEX-ZV68-0011-R9b-SM-GNTB9 50-59 years, female 60.3
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 60.2
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 60.1
GTEX-14JFF-0011-R9b-SM-G9ERJ 60-69 years, male 59.6
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 59.6
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 59.5
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 59.4
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 59.1
GTEX-1POEN-0011-R9b-SM-G8LL1 30-39 years, female 59.0
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 58.8
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 58.6
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 58.2
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 57.8
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 57.5
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 57.4
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 57.4
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 57.3
GTEX-1269C-0011-R9b-SM-GI4WM 60-69 years, female 57.0
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 57.0
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 56.3
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 55.9
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 55.8
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 55.6
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 54.7
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 54.3
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 53.8
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 53.7
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 53.4
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 53.0
GTEX-1RAZS-0011-R9b-SM-G8OMS 50-59 years, male 52.8
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 52.5
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 52.5
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 52.1
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 51.9
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 51.7
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 51.3
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 50.7
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 50.1
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 50.0
GTEX-1RDX4-0011-R9b-SM-G8LMG 50-59 years, female 49.8
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 49.2
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 49.0
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 48.9
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 48.9
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 48.9
GTEX-117YW-0011-R9a-SM-GHWPQ 50-59 years, male 48.3
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 47.9
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 47.3
GTEX-1A8G6-0011-R9a-SM-GOQZR 60-69 years, male 47.3
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 46.9
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 46.9
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 46.1
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 45.5
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 45.5
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 45.2
GTEX-1PPGY-0011-R9a-SM-G8LMR 60-69 years, male 45.2
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 44.6
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 44.5
GTEX-11NUK-0011-R9a-SM-GI4XG 50-59 years, male 43.8
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 43.3
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 42.9
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 42.3
GTEX-11ZU8-0011-R9b-SM-GHWOL 60-69 years, male 42.2
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 42.2
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 42.1
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 41.6
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 41.2
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 40.9
GTEX-1N5O9-0011-R9a-SM-G8LLD 60-69 years, male 40.4
GTEX-111VG-0011-R9b-SM-GHWOB 60-69 years, male 39.7
GTEX-13112-0011-R9b-SM-GHWOV 50-59 years, male 39.1
GTEX-1R9PO-0011-R9a-SM-G8LKP 60-69 years, female 39.0
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 38.9
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 38.5
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 37.4
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 37.2
GTEX-WVLH-0011-R9A-SM-H7OHH 50-59 years, male 37.1
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 37.0
GTEX-15UF6-0011-R9b-SM-GOQZG 70-79 years, female 36.9
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 36.2
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 36.2
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 36.0
GTEX-113JC-0011-R9a-SM-H6Q8K 50-59 years, female 35.8
GTEX-11GSO-0011-R9b-SM-GI4VN 60-69 years, male 35.6
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 34.6
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 34.6
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 34.6
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 30.7
GTEX-1KD4Q-0011-R9a-SM-G8LLU 40-49 years, male 29.9
GTEX-1QP6S-0011-R9a-SM-G8LMO 40-49 years, male 29.9
GTEX-12584-0011-R9b-SM-GI4WC 40-49 years, male 29.7
GTEX-1LKK1-0011-R9a-SM-G8OLY 50-59 years, female 28.7
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 28.2
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 27.9
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 27.6
GTEX-1J8Q2-0011-R9b-SM-GPRYH 60-69 years, male 23.9
GTEX-12WSI-0011-R9b-SM-GHWOU 50-59 years, male 22.3
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

36.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 36.2
FF:10159-103A6 76 years, female 46.4
FF:10181-103D1 60 years, female 25.9

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

40.8
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 40.8
Samples: 4

Max nTPM: 74.6
Min nTPM: 17.6
Sample A Female 17.6
Sample B Female 38.5
Sample C Male 74.6
Sample D Male 32.5
Ventral spinal cord
nTPM: 37.5
Samples: 4

Max nTPM: 49.8
Min nTPM: 25.1
Sample A Female 25.1
Sample B Female 36.4
Sample C Male 49.8
Sample D Male 38.5

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