MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:50.4 nTPM
HPA Brain:30.1 nTPM
GTEx:50.4 nTPM
FANTOM5:48.9 Scaled Tags Per Million
Pig:25.4 nTPM
Mouse:40.9 nTPM
Allen mouse:0.6 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 30.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 19.9
2666 Male, age 74, left hemisphere 30.9
1870 Female, age 42, unknown 27.2
2586 Male, age 75, left hemisphere 24.4
2411 Female, age 72, unknown 22.2
2219 Male, age 76, both hemispheres 22.0
2019 Male, age 18, unknown 16.1
1833 Male, age 53, unknown 15.9
1827 Male, age 72, unknown 14.9
2828 Female, age 72, unknown 13.5
1830 Male, age 51, unknown 11.5
Dorsal raphe nucleus
nTPM: 28.5
1828 Male, age 53, unknown 35.9
2047 Male, age 72, unknown 32.7
2298 Female, age 72, unknown 31.3
2016 Female, age 72, unknown 29.2
2750 Male, age 76, both hemispheres 13.3
Inferior colliculus
nTPM: 27.7
1890 Male, age 53, unknown 31.2
2849 Male, age 72, unknown 30.1
1848 Female, age 42, unknown 26.3
2097 Female, age 72, unknown 23.2
Median raphe nucleus
nTPM: 19.0
2220 Male, age 76, midline 19.0
Periaquaductal grey, anterior
nTPM: 20.2
1947 Male, age 18, unknown 23.4
1795 Male, age 51, unknown 21.6
2502 Female, age 75, unknown 15.7
Periaquaductal grey, dorsal
nTPM: 26.7
2850 Male, age 76, both hemispheres 41.9
1840 Male, age 53, unknown 25.9
1831 Male, age 72, unknown 21.8
2464 Female, age 72, unknown 17.1
Periaquaductal grey, lateral
nTPM: 20.0
2140 Male, age 76, both hemispheres 22.0
2272 Male, age 74, both hemispheres 19.7
2053 Male, age 18, unknown 18.3
Pretectal area
nTPM: 22.2
1817 Female, age 42, unknown 29.9
1816 Male, age 51, unknown 28.8
1944 Female, age 72, unknown 26.5
2007 Male, age 72, unknown 26.1
2224 Female, age 72, unknown 23.5
2825 Male, age 18, unknown 21.4
2667 Female, age 75, unknown 21.0
2273 Male, age 74, both hemispheres 19.3
1815 Male, age 53, unknown 18.3
2316 Male, age 76, right hemisphere 15.6
2407 Male, age 75, both hemispheres 13.8
Red nucleus
nTPM: 21.5
2503 Female, age 72, unknown 34.2
1865 Male, age 51, unknown 25.6
1821 Female, age 72, unknown 25.5
2725 Female, age 75, unknown 25.3
2785 Male, age 18, unknown 24.6
1954 Female, age 42, unknown 19.8
2769 Male, age 72, unknown 19.3
2227 Male, age 72, unknown 18.0
1904 Male, age 53, unknown 17.6
2823 Male, age 76, right hemisphere 17.0
2584 Male, age 75, left hemisphere 16.8
2588 Male, age 74, left hemisphere 14.8
Substantia nigra
nTPM: 30.1
2665 Male, age 74, both hemispheres 34.3
1889 Female, age 72, unknown 33.9
2241 Male, age 72, unknown 33.9
1916 Female, age 42, unknown 30.7
2409 Female, age 72, unknown 30.5
1941 Male, age 53, unknown 30.2
2699 Male, age 18, unknown 29.9
2590 Female, age 75, unknown 29.1
1851 Male, age 51, unknown 27.7
2583 Male, age 75, right hemisphere 20.4
Superior colliculus
nTPM: 20.4
2587 Male, age 74, left hemisphere 28.6
2087 Female, age 72, unknown 25.6
1839 Male, age 51, unknown 23.5
2668 Female, age 75, unknown 22.1
1995 Male, age 72, unknown 20.4
1895 Male, age 76, right hemisphere 19.3
1913 Female, age 42, unknown 18.6
2261 Male, age 18, unknown 18.6
1796 Male, age 53, unknown 16.4
2664 Male, age 75, both hemispheres 11.3
Ventral tegmental area
nTPM: 23.9
2021 Male, age 53, unknown 30.1
1915 Female, age 42, unknown 28.8
2223 Female, age 72, unknown 24.7
2410 Female, age 72, unknown 24.5
1942 Male, age 51, unknown 19.8
2218 Male, age 76, both hemispheres 15.6

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 50.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 50.4
Samples: 183

Max nTPM: 124.7
Min nTPM: 20.6
Std nTPM: 19.0
Median nTPM: 48.1
GTEX-X585-0011-R2B-SM-46MVF 50-59 years, male 124.7
GTEX-14PN4-0011-R2a-SM-6EU2Y 50-59 years, male 122.2
GTEX-1P4AB-0011-R2a-SM-F649K 50-59 years, male 121.7
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 106.8
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 102.7
GTEX-X4EP-0011-R2B-SM-3P625 60-69 years, female 101.2
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 92.2
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 90.1
GTEX-1O9I2-0011-R2b-SM-F3K53 50-59 years, male 87.1
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 86.5
GTEX-1PIIG-0011-R2b-SM-F648W 30-39 years, male 84.9
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 48.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 48.9
FF:10158-103A5 76 years, female 48.9

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 25.4
Pig sample Sample description nTPM
Substantia nigra
nTPM: 18.0
Samples: 4

Max nTPM: 25.4
Min nTPM: 14.6
Sample A Female 14.6
Sample B Female 25.4
Sample C Male 16.3
Sample D Male 15.6
Midbrain
nTPM: 18.3
Samples: 4

Max nTPM: 29.2
Min nTPM: 11.9
Sample A Female 29.2
Sample B Female 11.9
Sample C Male 20.0
Sample D Male 12.0
Periaqueductal gray
nTPM: 13.8
Samples: 3

Max nTPM: 17.5
Min nTPM: 11.7
Sample B Female 12.3
Sample C Male 17.5
Sample D Male 11.7
Superior colliculi
nTPM: 25.4
Samples: 4

Max nTPM: 40.3
Min nTPM: 14.3
Sample A Female 22.3
Sample B Female 40.3
Sample C Male 24.7
Sample D Male 14.3

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 40.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 40.9
Samples: 4

Max nTPM: 43.9
Min nTPM: 38.6
Sample A Male 43.9
Sample B Male 38.6
Sample C Female 41.5
Sample D Female 39.4

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.6
71015377 Antisense, RP_050725_02_G08, Mouse strain C57BL/6J (56 days, male) 0.7
68795459 Antisense, RP_050111_01_C08, Mouse strain C57BL/6J (56 days, male) 0.5

Contact

The Project

The Human Protein Atlas

KAW logo The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.

contact@proteinatlas.org
GCBR logo Elixir core logo SciLifeLab logo Uppsala university logo KI logo KTH logo