MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:19.3 nTPM
HPA Brain:25.1 nTPM
GTEx:19.3 nTPM
FANTOM5:32.5 Scaled Tags Per Million
Pig:20.6 nTPM
Mouse:83.4 nTPM
Allen mouse:0.4 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 25.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 20.4
1870 Female, age 42, unknown 22.9
1830 Male, age 51, unknown 22.1
2411 Female, age 72, unknown 21.3
1833 Male, age 53, unknown 20.9
2019 Male, age 18, unknown 20.6
2586 Male, age 75, left hemisphere 20.6
1827 Male, age 72, unknown 19.3
2828 Female, age 72, unknown 18.9
2666 Male, age 74, left hemisphere 18.7
2219 Male, age 76, both hemispheres 18.3
Dorsal raphe nucleus
nTPM: 21.7
2750 Male, age 76, both hemispheres 22.7
1828 Male, age 53, unknown 21.8
2016 Female, age 72, unknown 21.6
2047 Male, age 72, unknown 21.2
2298 Female, age 72, unknown 21.0
Inferior colliculus
nTPM: 22.4
2097 Female, age 72, unknown 24.9
1848 Female, age 42, unknown 23.4
1890 Male, age 53, unknown 22.5
2849 Male, age 72, unknown 19.0
Median raphe nucleus
nTPM: 22.5
2220 Male, age 76, midline 22.5
Periaquaductal grey, anterior
nTPM: 21.6
1947 Male, age 18, unknown 24.4
2502 Female, age 75, unknown 21.6
1795 Male, age 51, unknown 18.8
Periaquaductal grey, dorsal
nTPM: 21.5
2850 Male, age 76, both hemispheres 24.1
1840 Male, age 53, unknown 22.8
2464 Female, age 72, unknown 21.6
1831 Male, age 72, unknown 17.4
Periaquaductal grey, lateral
nTPM: 19.2
2053 Male, age 18, unknown 20.7
2272 Male, age 74, both hemispheres 19.1
2140 Male, age 76, both hemispheres 17.9
Pretectal area
nTPM: 20.3
2316 Male, age 76, right hemisphere 23.0
1817 Female, age 42, unknown 22.9
1944 Female, age 72, unknown 22.7
1815 Male, age 53, unknown 22.3
2667 Female, age 75, unknown 21.6
2224 Female, age 72, unknown 21.1
1816 Male, age 51, unknown 20.3
2007 Male, age 72, unknown 19.3
2825 Male, age 18, unknown 17.7
2273 Male, age 74, both hemispheres 17.2
2407 Male, age 75, both hemispheres 15.5
Red nucleus
nTPM: 23.2
1821 Female, age 72, unknown 29.2
1865 Male, age 51, unknown 27.6
1954 Female, age 42, unknown 26.8
1904 Male, age 53, unknown 25.5
2503 Female, age 72, unknown 24.6
2769 Male, age 72, unknown 23.4
2823 Male, age 76, right hemisphere 22.9
2725 Female, age 75, unknown 22.6
2227 Male, age 72, unknown 22.4
2785 Male, age 18, unknown 21.0
2584 Male, age 75, left hemisphere 16.5
2588 Male, age 74, left hemisphere 16.1
Substantia nigra
nTPM: 25.1
2241 Male, age 72, unknown 33.4
2409 Female, age 72, unknown 33.2
2699 Male, age 18, unknown 27.3
1916 Female, age 42, unknown 27.2
1889 Female, age 72, unknown 26.4
1851 Male, age 51, unknown 26.1
1941 Male, age 53, unknown 22.8
2665 Male, age 74, both hemispheres 19.7
2590 Female, age 75, unknown 18.8
2583 Male, age 75, right hemisphere 16.3
Superior colliculus
nTPM: 19.8
1913 Female, age 42, unknown 24.2
2668 Female, age 75, unknown 24.1
1995 Male, age 72, unknown 23.3
1895 Male, age 76, right hemisphere 20.1
2587 Male, age 74, left hemisphere 19.8
2087 Female, age 72, unknown 19.6
2261 Male, age 18, unknown 17.5
1839 Male, age 51, unknown 16.8
1796 Male, age 53, unknown 16.7
2664 Male, age 75, both hemispheres 15.4
Ventral tegmental area
nTPM: 23.8
2410 Female, age 72, unknown 27.2
1915 Female, age 42, unknown 25.2
2223 Female, age 72, unknown 23.4
2218 Male, age 76, both hemispheres 23.0
1942 Male, age 51, unknown 22.2
2021 Male, age 53, unknown 21.6

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 19.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 19.3
Samples: 183

Max nTPM: 30.6
Min nTPM: 11.0
Std nTPM: 4.0
Median nTPM: 18.6
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 30.6
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 30.2
GTEX-11UD1-0011-R2b-SM-5BC6O 40-49 years, female 29.8
GTEX-1CB4J-0011-R2a-SM-9WG5N 60-69 years, male 28.5
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 27.7
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 27.5
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 27.4
GTEX-1B996-0011-R2a-SM-7IGON 60-69 years, male 27.1
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 26.6
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 26.5
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 26.3
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 32.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 32.5
FF:10158-103A5 76 years, female 32.5

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 20.6
Pig sample Sample description nTPM
Substantia nigra
nTPM: 17.2
Samples: 4

Max nTPM: 23.4
Min nTPM: 12.1
Sample A Female 20.5
Sample B Female 12.1
Sample C Male 12.9
Sample D Male 23.4
Midbrain
nTPM: 20.6
Samples: 4

Max nTPM: 35.7
Min nTPM: 12.4
Sample A Female 35.7
Sample B Female 18.5
Sample C Male 12.4
Sample D Male 15.9
Periaqueductal gray
nTPM: 14.0
Samples: 3

Max nTPM: 15.7
Min nTPM: 12.2
Sample B Female 15.7
Sample C Male 12.2
Sample D Male 14.2
Superior colliculi
nTPM: 19.1
Samples: 4

Max nTPM: 23.1
Min nTPM: 15.9
Sample A Female 23.1
Sample B Female 15.9
Sample C Male 17.0
Sample D Male 20.5

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 83.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 83.4
Samples: 4

Max nTPM: 89.7
Min nTPM: 72.8
Sample A Male 72.8
Sample B Male 88.6
Sample C Female 82.5
Sample D Female 89.7

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.4
67814216 Antisense, RP_040920_01_G04, Mouse strain C57BL/6J (56 days, male) 0.4

Contact

The Project

The Human Protein Atlas

KAW logo The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.

contact@proteinatlas.org
GCBR logo Elixir core logo SciLifeLab logo Uppsala university logo KI logo KTH logo