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  • MAP1LC3A
BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
Brain methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:189.5 nTPM
HPA Brain:169.4 nTPM
GTEx:189.5 nTPM
FANTOM5:237.9 Scaled Tags Per Million
Pig:115.0 nTPM
Mouse:54.9 nTPM
Allen mouse:1.9 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

169.4
Sample id Sample description nTPM
Amygdala
nTPM: 143.0
2814 Male, age 76, right hemisphere 181.9
1987 Female, age 91, left hemisphere 152.1
2517 Female, age 94, left hemisphere 138.4
2695 Female, age 67, right hemisphere 127.6
2514 Male, age 75, right hemisphere 115.1
Basal amygdala
nTPM: 152.8
2685 Female, age 94, left hemisphere 182.8
2243 Female, age 91, right hemisphere 163.6
2827 Female, age 67, right hemisphere 156.7
1955 Male, age 76, both hemispheres 147.8
2110 Male, age 80, left hemisphere 138.1
2609 Male, age 75, right hemisphere 127.7
Central amygdala
nTPM: 169.4
2826 Female, age 94, left hemisphere 198.9
1905 Male, age 76, both hemispheres 180.5
2701 Female, age 91, right hemisphere 171.6
2239 Male, age 80, left hemisphere 158.6
2515 Male, age 75, right hemisphere 137.5
Corticomedial amygdala
nTPM: 145.7
2242 Female, age 91, right hemisphere 173.2
2829 Male, age 80, left hemisphere 170.6
2535 Female, age 67, right hemisphere 166.9
2429 Female, age 94, left hemisphere 133.0
2240 Male, age 76, both hemispheres 117.4
2428 Male, age 75, right hemisphere 113.1
Lateral amygdala
nTPM: 150.0
2534 Female, age 94, left hemisphere 198.7
1883 Male, age 76, both hemispheres 177.7
2255 Female, age 91, right hemisphere 150.8
2830 Female, age 67, right hemisphere 137.0
2516 Male, age 75, right hemisphere 121.8
2256 Male, age 80, left hemisphere 114.3

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

189.5
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 189.5
Samples: 181

Max nTPM: 458.8
Min nTPM: 80.4
Std nTPM: 67.9
Median nTPM: 179.0
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 458.8
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 457.6
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 420.8
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 384.5
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 358.3
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 350.1
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 334.7
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 321.0
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 318.6
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 310.1
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 298.5
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 296.7
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 296.6
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 291.5
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 291.4
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 290.6
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 290.5
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 290.3
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 274.3
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 268.5
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 265.4
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 262.1
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 257.2
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 249.6
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 248.5
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 246.2
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 244.1
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 243.8
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 241.3
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 241.1
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 241.0
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 237.4
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 237.3
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 237.1
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 236.5
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 235.8
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 233.3
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 233.1
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 233.1
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 232.6
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 231.1
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 230.1
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 229.1
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 228.5
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 228.0
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 226.4
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 225.7
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 225.3
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 223.4
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 220.0
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 218.4
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 217.9
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 217.7
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 217.1
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 215.2
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 215.0
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 214.8
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 214.0
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 213.5
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 209.4
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 208.4
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 206.1
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 206.0
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 205.7
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 205.1
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 203.7
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 201.8
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 201.5
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 198.9
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 196.5
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 196.1
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 194.3
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 193.7
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 193.7
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 190.1
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 189.8
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 189.6
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 189.4
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 188.7
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 188.4
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 188.0
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 185.6
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 183.9
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 183.3
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 182.5
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 182.1
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 179.8
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 179.5
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 179.5
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 179.0
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 179.0
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 178.1
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 176.7
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 173.3
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 172.5
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 172.2
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 171.8
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 171.2
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 171.1
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 171.0
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 169.7
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 168.5
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 168.5
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 168.1
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 166.9
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 166.9
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 166.7
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 166.2
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 164.7
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 164.1
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 162.2
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 161.2
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 160.3
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 159.4
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 156.7
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 156.6
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 155.1
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 153.6
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 152.4
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 152.3
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 151.7
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 151.6
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 150.6
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 150.2
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 150.2
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 149.9
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 149.4
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 149.1
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 148.8
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 148.6
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 148.1
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 148.0
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 146.9
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 146.6
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 144.8
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 144.4
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 144.3
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 144.3
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 144.2
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 143.7
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 143.0
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 142.1
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 141.5
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 141.5
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 140.6
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 133.3
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 132.2
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 131.3
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 130.6
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 129.8
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 127.7
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 127.4
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 126.7
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 126.6
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 126.1
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 125.0
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 122.9
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 121.3
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 121.2
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 119.0
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 118.5
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 114.1
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 114.0
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 113.7
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 113.3
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 111.5
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 105.9
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 105.6
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 103.7
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 103.4
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 101.8
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 98.6
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 96.3
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 94.6
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 94.5
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 90.4
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 89.4
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 85.6
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 83.1
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 82.4
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 80.4
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

237.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 237.9
FF:10151-102I7 76 years, female 237.9

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

115.0
Pig sample Sample description nTPM
Amygdala
nTPM: 115.0
Samples: 4

Max nTPM: 165.0
Min nTPM: 89.9
Sample A Female 165.0
Sample B Female 91.2
Sample C Male 113.9
Sample D Male 89.9

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

54.9
Mouse sample Sample description nTPM
Amygdala
nTPM: 54.9
Samples: 4

Max nTPM: 72.8
Min nTPM: 45.7
Sample A Male 50.8
Sample B Male 50.3
Sample C Female 72.8
Sample D Female 45.7

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

1.9
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 1.9
69751973 Antisense, RP_050503_04_H01, Mouse strain C57BL/6J (56 days, male) 1.9

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