A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
37.0
nTPM
Monaco:
75.2
nTPM
Schmiedel:
63.6
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
37.0
HPA sample
nTPM
Classical monocyte nTPM: 6.6
Samples: 6
Max nTPM: 8.0
Min nTPM: 5.3
P10809_1003
8.0
P10809_1020
5.4
P10809_1039
7.6
P10809_1058
6.0
P10809_1080
5.3
P10809_1107
7.1
Intermediate monocyte nTPM: 24.0
Samples: 6
Max nTPM: 29.6
Min nTPM: 16.3
P10809_1004
24.9
P10809_1023
20.4
P10809_1042
28.2
P10809_1061
29.6
P10809_1081
16.3
P10809_1108
24.9
Non-classical monocyte nTPM: 37.0
Samples: 5
Max nTPM: 72.9
Min nTPM: 22.9
P10809_1005
29.9
P10809_1053
33.2
P10809_1072
72.9
P10809_1082
25.9
P10809_1109
22.9
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
75.2
Monaco sample
nTPM
Classical monocyte nTPM: 21.8
Samples: 4
Max nTPM: 29.5
Min nTPM: 14.9
RHH5313_R3680
14.9
RHH5221_R3593
29.5
RHH5250_R3622
22.2
RHH5279_R3651
20.6
Intermediate monocyte nTPM: 61.6
Samples: 4
Max nTPM: 86.6
Min nTPM: 41.6
RHH5314_R3681
46.0
RHH5222_R3594
86.6
RHH5251_R3623
72.1
RHH5280_R3652
41.6
Non-classical monocyte nTPM: 75.2
Samples: 4
Max nTPM: 105.2
Min nTPM: 44.9
RHH5315_R3682
62.8
RHH5223_R3595
105.2
RHH5252_R3624
87.8
RHH5281_R3653
44.9
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
63.6
Schmiedel sample id
TPM
Classical monocyte TPM: 16.3
Samples: 91
Max TPM: 31.3
Min TPM: 10.1
MONOCYTES_1
31.3
MONOCYTES_2
30.2
MONOCYTES_3
27.6
MONOCYTES_4
26.1
MONOCYTES_5
25.9
MONOCYTES_6
25.3
MONOCYTES_7
25.1
MONOCYTES_8
25.0
MONOCYTES_9
24.4
MONOCYTES_10
23.2
MONOCYTES_11
21.7
MONOCYTES_12
21.7
MONOCYTES_13
21.5
MONOCYTES_14
20.2
MONOCYTES_15
19.6
MONOCYTES_16
19.3
MONOCYTES_17
19.0
MONOCYTES_18
18.6
MONOCYTES_19
18.5
MONOCYTES_20
18.5
MONOCYTES_21
18.4
MONOCYTES_22
18.4
MONOCYTES_23
18.4
MONOCYTES_24
18.2
MONOCYTES_25
18.1
MONOCYTES_26
18.1
MONOCYTES_27
17.9
MONOCYTES_28
17.5
MONOCYTES_29
17.4
MONOCYTES_30
16.7
MONOCYTES_31
16.7
MONOCYTES_32
16.7
MONOCYTES_33
16.2
MONOCYTES_34
16.2
MONOCYTES_35
16.2
MONOCYTES_36
16.2
MONOCYTES_37
16.0
MONOCYTES_38
15.8
MONOCYTES_39
15.7
MONOCYTES_40
15.7
MONOCYTES_41
15.5
MONOCYTES_42
15.5
MONOCYTES_43
15.4
MONOCYTES_44
15.4
MONOCYTES_45
15.4
MONOCYTES_46
15.3
MONOCYTES_47
15.1
MONOCYTES_48
15.0
MONOCYTES_49
14.8
MONOCYTES_50
14.7
MONOCYTES_51
14.5
MONOCYTES_52
14.5
MONOCYTES_53
14.4
MONOCYTES_54
14.3
MONOCYTES_55
14.2
MONOCYTES_56
14.1
MONOCYTES_57
14.0
MONOCYTES_58
13.8
MONOCYTES_59
13.8
MONOCYTES_60
13.8
MONOCYTES_61
13.8
MONOCYTES_62
13.7
MONOCYTES_63
13.6
MONOCYTES_64
13.6
MONOCYTES_65
13.6
MONOCYTES_66
13.6
MONOCYTES_67
13.5
MONOCYTES_68
13.4
MONOCYTES_69
13.4
MONOCYTES_70
13.2
MONOCYTES_71
13.1
MONOCYTES_72
13.0
MONOCYTES_73
13.0
MONOCYTES_74
12.8
MONOCYTES_75
12.7
MONOCYTES_76
12.7
MONOCYTES_77
12.7
MONOCYTES_78
12.5
MONOCYTES_79
12.3
MONOCYTES_80
12.2
MONOCYTES_81
12.1
MONOCYTES_82
12.1
MONOCYTES_83
12.0
MONOCYTES_84
11.5
MONOCYTES_85
11.4
MONOCYTES_86
11.4
MONOCYTES_87
11.3
MONOCYTES_88
11.0
MONOCYTES_89
11.0
MONOCYTES_90
10.5
MONOCYTES_91
10.1
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Non-classical monocyte TPM: 63.6
Samples: 90
Max TPM: 97.6
Min TPM: 45.0
M2_1
97.6
M2_2
95.6
M2_3
90.6
M2_4
90.5
M2_5
88.6
M2_6
87.8
M2_7
87.6
M2_8
86.6
M2_9
82.8
M2_10
79.7
M2_11
79.0
M2_12
78.7
M2_13
76.2
M2_14
75.9
M2_15
74.3
M2_16
73.1
M2_17
72.9
M2_18
70.3
M2_19
70.2
M2_20
70.0
M2_21
69.3
M2_22
69.2
M2_23
69.2
M2_24
69.0
M2_25
68.2
M2_26
67.9
M2_27
67.5
M2_28
67.2
M2_29
66.7
M2_30
66.6
M2_31
66.3
M2_32
66.1
M2_33
65.9
M2_34
65.3
M2_35
65.1
M2_36
64.5
M2_37
63.9
M2_38
63.9
M2_39
63.5
M2_40
63.3
M2_41
62.4
M2_42
62.2
M2_43
61.3
M2_44
61.2
M2_45
61.2
M2_46
61.1
M2_47
60.9
M2_48
60.8
M2_49
60.7
M2_50
60.5
M2_51
60.0
M2_52
60.0
M2_53
59.9
M2_54
59.7
M2_55
58.9
M2_56
58.6
M2_57
58.2
M2_58
57.0
M2_59
56.9
M2_60
56.6
M2_61
56.6
M2_62
56.2
M2_63
56.2
M2_64
55.9
M2_65
55.6
M2_66
55.6
M2_67
55.0
M2_68
55.0
M2_69
54.8
M2_70
54.6
M2_71
54.6
M2_72
54.2
M2_73
53.9
M2_74
53.6
M2_75
53.6
M2_76
52.7
M2_77
52.1
M2_78
52.0
M2_79
51.6
M2_80
51.3
M2_81
51.0
M2_82
50.1
M2_83
49.6
M2_84
49.2
M2_85
48.9
M2_86
48.9
M2_87
47.4
M2_88
46.6
M2_89
45.5
M2_90
45.0
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