MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:121.8 nTPM
HPA Brain:142.8 nTPM
GTEx:121.8 nTPM
FANTOM5:256.2 Scaled Tags Per Million
Pig:288.0 nTPM
Mouse:325.8 nTPM
Allen mouse:11.7 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 142.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 88.5
2411 Female, age 72, unknown 129.2
1870 Female, age 42, unknown 118.6
1827 Male, age 72, unknown 108.3
2219 Male, age 76, both hemispheres 93.8
1833 Male, age 53, unknown 92.8
2828 Female, age 72, unknown 85.1
1830 Male, age 51, unknown 84.6
2666 Male, age 74, left hemisphere 70.1
2019 Male, age 18, unknown 53.8
2586 Male, age 75, left hemisphere 48.5
Dorsal raphe nucleus
nTPM: 104.4
2298 Female, age 72, unknown 147.2
2750 Male, age 76, both hemispheres 132.6
2047 Male, age 72, unknown 96.3
2016 Female, age 72, unknown 74.4
1828 Male, age 53, unknown 71.5
Inferior colliculus
nTPM: 80.2
2097 Female, age 72, unknown 98.8
1848 Female, age 42, unknown 83.8
2849 Male, age 72, unknown 72.6
1890 Male, age 53, unknown 65.4
Median raphe nucleus
nTPM: 142.8
2220 Male, age 76, midline 142.8
Periaquaductal grey, anterior
nTPM: 121.3
1947 Male, age 18, unknown 134.6
2502 Female, age 75, unknown 128.2
1795 Male, age 51, unknown 101.0
Periaquaductal grey, dorsal
nTPM: 89.3
1840 Male, age 53, unknown 103.1
2850 Male, age 76, both hemispheres 89.1
2464 Female, age 72, unknown 83.2
1831 Male, age 72, unknown 82.0
Periaquaductal grey, lateral
nTPM: 90.0
2053 Male, age 18, unknown 101.5
2272 Male, age 74, both hemispheres 90.8
2140 Male, age 76, both hemispheres 77.7
Pretectal area
nTPM: 87.5
2224 Female, age 72, unknown 118.2
2825 Male, age 18, unknown 109.1
1816 Male, age 51, unknown 99.9
2273 Male, age 74, both hemispheres 90.7
1815 Male, age 53, unknown 85.2
2316 Male, age 76, right hemisphere 84.2
2667 Female, age 75, unknown 81.5
1944 Female, age 72, unknown 80.1
2007 Male, age 72, unknown 78.7
1817 Female, age 42, unknown 72.5
2407 Male, age 75, both hemispheres 62.1
Red nucleus
nTPM: 75.2
1821 Female, age 72, unknown 98.2
1954 Female, age 42, unknown 85.9
1904 Male, age 53, unknown 85.5
2503 Female, age 72, unknown 80.1
2725 Female, age 75, unknown 76.5
2227 Male, age 72, unknown 74.5
1865 Male, age 51, unknown 74.2
2769 Male, age 72, unknown 72.5
2584 Male, age 75, left hemisphere 70.9
2823 Male, age 76, right hemisphere 67.8
2588 Male, age 74, left hemisphere 61.7
2785 Male, age 18, unknown 55.2
Substantia nigra
nTPM: 98.2
1916 Female, age 42, unknown 132.1
2241 Male, age 72, unknown 130.9
1851 Male, age 51, unknown 111.6
1941 Male, age 53, unknown 103.1
1889 Female, age 72, unknown 98.4
2409 Female, age 72, unknown 98.4
2699 Male, age 18, unknown 94.9
2590 Female, age 75, unknown 75.2
2665 Male, age 74, both hemispheres 74.8
2583 Male, age 75, right hemisphere 63.0
Superior colliculus
nTPM: 85.7
2261 Male, age 18, unknown 111.1
1796 Male, age 53, unknown 103.2
2668 Female, age 75, unknown 102.7
2587 Male, age 74, left hemisphere 89.6
1913 Female, age 42, unknown 87.3
1895 Male, age 76, right hemisphere 87.2
1839 Male, age 51, unknown 83.1
2087 Female, age 72, unknown 79.0
1995 Male, age 72, unknown 66.0
2664 Male, age 75, both hemispheres 47.4
Ventral tegmental area
nTPM: 109.9
2410 Female, age 72, unknown 126.4
1915 Female, age 42, unknown 116.8
2218 Male, age 76, both hemispheres 115.7
2223 Female, age 72, unknown 106.5
1942 Male, age 51, unknown 97.6
2021 Male, age 53, unknown 96.7

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 121.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 121.8
Samples: 183

Max nTPM: 229.1
Min nTPM: 43.2
Std nTPM: 41.3
Median nTPM: 122.9
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 229.1
GTEX-117XS-0011-R2b-SM-GI4VT 60-69 years, male 225.4
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 220.6
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 216.3
GTEX-11NUK-0011-R2a-SM-GINAO 50-59 years, male 212.7
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 205.6
GTEX-13OW7-0011-R2b-SM-H6Q8E 50-59 years, male 202.9
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 199.1
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 195.8
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 195.1
GTEX-S7SE-0011-R2A-SM-2XCDC 50-59 years, male 193.7
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 256.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 256.2
FF:10158-103A5 76 years, female 256.2

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 288.0
Pig sample Sample description nTPM
Substantia nigra
nTPM: 288.0
Samples: 4

Max nTPM: 441.5
Min nTPM: 98.3
Sample A Female 384.6
Sample B Female 227.7
Sample C Male 441.5
Sample D Male 98.3
Midbrain
nTPM: 181.7
Samples: 4

Max nTPM: 197.8
Min nTPM: 149.8
Sample A Female 197.8
Sample B Female 196.5
Sample C Male 149.8
Sample D Male 182.5
Periaqueductal gray
nTPM: 154.2
Samples: 3

Max nTPM: 192.8
Min nTPM: 133.4
Sample B Female 133.4
Sample C Male 192.8
Sample D Male 136.4
Superior colliculi
nTPM: 169.2
Samples: 4

Max nTPM: 263.0
Min nTPM: 96.8
Sample A Female 180.7
Sample B Female 263.0
Sample C Male 96.8
Sample D Male 136.2

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 325.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 325.8
Samples: 4

Max nTPM: 331.6
Min nTPM: 319.6
Sample A Male 324.4
Sample B Male 331.6
Sample C Female 319.6
Sample D Female 327.4

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 11.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 11.7
77454574 Antisense, RP_070129_01_A03, Mouse strain C57BL/6J (56 days, male) 21.0
2478 Antisense, RP_Baylor_103188, Mouse strain C57BL/6J (56 days, male) 12.6
2479 Antisense, RP_Baylor_103188, Mouse strain C57BL/6J (56 days, male) 9.3
797 Antisense, RP_040324_01_A05, Mouse strain C57BL/6J (56 days, male) 1.5

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