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  • PGRMC1
BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Brain methods
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:176.4 nTPM
HPA Brain:134.8 nTPM
GTEx:176.4 nTPM
FANTOM5:160.3 Scaled Tags Per Million
Pig:171.6 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

134.8
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 98.6
1981 Female, age 72, midline 134.4
2816 Male, age 47, midline 94.3
2194 Female, age 79, both hemispheres 93.6
2565 Male, age 75, midline 85.7
2048 Male, age 55, midline 84.9
Cervical spinal cord, dorsal horn
nTPM: 134.8
2296 Male, age 66, both hemispheres 213.3
2173 Female, age 72, unknown 151.7
2069 Male, age 47, both hemispheres 149.0
2297 Male, age 75, both hemispheres 106.8
1877 Male, age 55, unknown 105.3
2721 Male, age 90, both hemispheres 83.0
Cervical spinal cord, ventral horn
nTPM: 96.7
2480 Male, age 75, both hemispheres 115.4
2098 Female, age 72, unknown 110.5
2068 Male, age 55, unknown 103.2
2295 Male, age 66, both hemispheres 88.4
2809 Male, age 90, both hemispheres 85.8
2820 Female, age 79, both hemispheres 76.8

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

176.4
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 176.4
Samples: 204

Max nTPM: 333.3
Min nTPM: 53.6
Std nTPM: 54.0
Median nTPM: 174.1
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 333.3
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 311.5
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 307.5
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 295.6
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 291.0
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 288.3
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 280.7
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 279.4
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 275.0
GTEX-1O9I2-0011-R9b-SM-G8OKW 50-59 years, male 267.3
GTEX-117YW-0011-R9a-SM-GHWPQ 50-59 years, male 266.0
GTEX-WVLH-0011-R9A-SM-H7OHH 50-59 years, male 261.9
GTEX-15SHU-0011-R9a-SM-GNIOE 40-49 years, female 261.4
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 260.4
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 259.7
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 259.2
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 257.7
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 252.9
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 250.4
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 249.2
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 246.5
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 246.0
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 245.0
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 241.8
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 241.3
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 241.0
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 240.7
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 237.7
GTEX-1PIIG-0011-R9b-SM-G8OLU 30-39 years, male 236.3
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 235.3
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 235.1
GTEX-1QMI2-0011-R9a-SM-G8ON7 60-69 years, male 234.2
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 233.4
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 232.3
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 231.4
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 230.0
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 229.9
GTEX-113JC-0011-R9a-SM-H6Q8K 50-59 years, female 228.3
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 227.2
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 226.1
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 224.5
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 224.5
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 223.6
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 223.6
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 222.1
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 220.7
GTEX-1MCQQ-0011-R9b-SM-G8OKM 60-69 years, male 218.8
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 218.7
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 217.3
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 215.2
GTEX-1NV8Z-0011-R9b-SM-G8OME 60-69 years, male 214.6
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 214.3
GTEX-11NV4-0011-R9a-SM-GHWPP 60-69 years, male 213.8
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 213.7
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 213.2
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 213.2
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 212.5
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 211.7
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 211.3
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 210.3
GTEX-1JMQJ-0011-R9b-SM-G8OKN 50-59 years, male 209.6
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 206.7
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 206.5
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 204.6
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 202.7
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 201.2
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 201.0
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 200.5
GTEX-14JFF-0011-R9b-SM-G9ERJ 60-69 years, male 199.7
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 196.7
GTEX-11ZU8-0011-R9b-SM-GHWOL 60-69 years, male 195.6
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 195.5
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 195.4
GTEX-1LG7Y-0011-R9a-SM-G8LMA 50-59 years, male 195.1
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 193.7
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 193.5
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 192.5
GTEX-1JMPZ-0011-R9a-SM-G8OLH 30-39 years, male 191.9
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 191.3
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 190.4
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 190.1
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 189.0
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 187.9
GTEX-1POEN-0011-R9b-SM-G8LL1 30-39 years, female 187.5
GTEX-1PWST-0011-R9a-SM-G8OMQ 70-79 years, male 187.2
GTEX-13112-0011-R9b-SM-GHWOV 50-59 years, male 185.3
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 185.2
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 184.0
GTEX-ZV68-0011-R9b-SM-GNTB9 50-59 years, female 182.7
GTEX-1IL2U-0011-R9a-SM-GPRYC 60-69 years, male 181.7
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 181.3
GTEX-1RAZS-0011-R9b-SM-G8OMS 50-59 years, male 181.1
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 180.6
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 180.3
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 178.6
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 178.3
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 178.2
GTEX-1212Z-0011-R9b-SM-GHWPM 60-69 years, male 177.8
GTEX-12WSI-0011-R9b-SM-GHWOU 50-59 years, male 176.8
GTEX-16GPK-0011-R9a-SM-GPI9P 60-69 years, male 174.3
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 174.3
GTEX-1LSVX-0011-R9b-SM-G8LL2 60-69 years, male 174.3
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 174.0
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 173.7
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 173.1
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 169.1
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 169.1
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 168.5
GTEX-1R9PO-0011-R9a-SM-G8LKP 60-69 years, female 167.7
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 166.9
GTEX-13QIC-0011-R9a-SM-GI4WO 60-69 years, female 166.6
GTEX-1PPGY-0011-R9a-SM-G8LMR 60-69 years, male 166.2
GTEX-13G51-0011-R9b-SM-GHWPS 60-69 years, male 166.0
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 164.8
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 164.1
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 161.5
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 161.2
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 160.7
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 160.4
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 160.3
GTEX-1RDX4-0011-R9b-SM-G8LMG 50-59 years, female 160.0
GTEX-11DXW-0011-R9a-SM-GHWOE 40-49 years, male 159.9
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 157.4
GTEX-1JMQL-0011-R9b-SM-G8LLH 50-59 years, female 156.8
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 156.6
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 155.6
GTEX-117XS-0011-R9b-SM-GHWOG 60-69 years, male 155.0
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 154.0
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 152.9
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 152.9
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 150.6
GTEX-1269C-0011-R9b-SM-GI4WM 60-69 years, female 150.5
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 150.3
GTEX-11GSO-0011-R9b-SM-GI4VN 60-69 years, male 149.9
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 149.8
GTEX-12584-0011-R9b-SM-GI4WC 40-49 years, male 149.3
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 148.9
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 146.6
GTEX-ZZPT-0011-R9a-SM-GOQYS 50-59 years, male 145.4
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 144.1
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 142.9
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 142.5
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 141.5
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 140.8
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 140.2
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 139.9
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 139.8
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 139.5
GTEX-11NUK-0011-R9a-SM-GI4XG 50-59 years, male 139.3
GTEX-111VG-0011-R9b-SM-GHWOB 60-69 years, male 137.6
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 136.5
GTEX-1J1OQ-0011-R9b-SM-GRR22 40-49 years, female 136.0
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 135.2
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 134.8
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 133.7
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 132.8
GTEX-12696-0011-R9a-SM-GHWPX 60-69 years, male 132.8
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 132.1
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 131.0
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 130.7
GTEX-1KD4Q-0011-R9a-SM-G8LLU 40-49 years, male 130.7
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 128.6
GTEX-15UF6-0011-R9b-SM-GOQZG 70-79 years, female 128.0
GTEX-1N5O9-0011-R9a-SM-G8LLD 60-69 years, male 125.9
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 125.5
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 123.4
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 123.4
GTEX-ZAJG-0011-R9a-SM-GNTAY 50-59 years, female 122.9
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 121.1
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 121.0
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 120.0
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 119.6
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 118.4
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 117.3
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 116.5
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 116.2
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 114.9
GTEX-1LKK1-0011-R9a-SM-G8OLY 50-59 years, female 113.7
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 111.9
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 110.0
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 108.0
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 106.1
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 106.1
GTEX-NPJ7-0011-R9a-SM-G8W5X 60-69 years, female 106.0
GTEX-1LH75-0011-R9b-SM-EY5Y9 50-59 years, female 105.5
GTEX-X4EP-0011-R9B-SM-4QASI 60-69 years, female 104.6
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 104.2
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 100.9
GTEX-1QP6S-0011-R9a-SM-G8LMO 40-49 years, male 99.8
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 98.6
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 98.5
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 96.1
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 95.4
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 95.0
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 94.4
GTEX-1J8Q2-0011-R9b-SM-GPRYH 60-69 years, male 93.9
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 93.2
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 92.8
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 91.6
GTEX-1JMOU-0011-R9b-SM-EY5YI 60-69 years, female 89.8
GTEX-1A8G6-0011-R9a-SM-GOQZR 60-69 years, male 89.0
GTEX-1JN6P-0011-R9a-SM-G8LM9 60-69 years, male 87.7
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 61.7
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 53.6
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

160.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 160.3
FF:10159-103A6 76 years, female 164.3
FF:10181-103D1 60 years, female 156.3

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

171.6
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 171.6
Samples: 4

Max nTPM: 205.0
Min nTPM: 150.7
Sample A Female 150.7
Sample B Female 163.0
Sample C Male 205.0
Sample D Male 167.6
Ventral spinal cord
nTPM: 133.4
Samples: 4

Max nTPM: 163.3
Min nTPM: 104.4
Sample A Female 104.4
Sample B Female 129.9
Sample C Male 135.9
Sample D Male 163.3

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