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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
h
m
l
n
Ganglion cells :
Not detected
Inner nuclear layer:
Not detected
Inner plexiform layer:
Not detected
Limiting membrane:
Not detected
Nerve fiber layer:
Not detected
Outer plexiform layer:
Not detected
Photoreceptor cells:
High
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
For selected proteins extended tissue profiling is performed in addition to standard tissue microarrays. The section below contains results from the extended profiling.
, antibody HPA068379
Photoreceptor cells
High
Limiting membrane
Not detected
Outer plexiform layer
Not detected
Inner nuclear layer
Not detected
Inner plexiform layer
Not detected
Ganglion cells
Not detected
Nerve fiber layer
Not detected
RETINA - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
116.2
GTEx sample id
Sample description
nTPM
Retina Average nTPM: 116.2
Samples: 105
Max nTPM: 307.3
Min nTPM: 39.9
Std nTPM: 38.0
Median nTPM:
218_1
71 years, female
307.3
237_1
82 years, male
215.2
172_1
72 years, female
200.4
394_1
75 years, female
184.6
375_1
74 years, female
177.8
354_1
81 years, female
171.6
35_1
74 years, female
169.6
350_1
84 years, female
166.4
42_1
85 years, male
164.8
355_1
70 years, female
164.4
335_1
73 years, female
161.0
356_1
87 years, female
159.2
352_1
62 years, male
157.7
286_1
68 years, female
156.9
264_1
73 years, female
154.3
506_1
65 years, male
151.2
376_1
75 years, female
148.1
99_1
64 years, male
148.0
349_1
83 years, male
146.1
319_1
81 years, male
145.9
6_1
73 years, female
143.5
389_1
86 years, female
143.2
243_1
75 years, male
141.3
137_1
83 years, male
140.9
347_1
72 years, male
139.4
320_1
89 years, female
136.8
353_1
82 years, female
136.5
499_1
55 years, female
131.0
452_1
88 years, female
130.6
318_1
68 years, male
129.1
379_1
60 years, male
128.4
173_1
67 years, male
127.8
503_1
68 years, male
127.2
4_1
88 years, female
126.8
293_1
68 years, female
125.3
351_1
91 years, male
125.1
317_1
60 years, male
125.0
425_1
59 years, female
124.0
163_1
78 years, male
123.7
386_1
76 years, male
122.2
117_1
61 years, male
122.1
153_1
70 years, female
120.5
9_1
66 years, female
120.1
313_1
79 years, female
119.8
404_1
82 years, female
118.8
115_1
83 years, male
118.1
406_1
79 years, male
117.5
447_1
81 years, male
117.5
109_1
81 years, female
117.3
119_1
70 years, female
116.9
41_1
94 years, female
116.4
321_1
62 years, female
116.1
229_1
69 years, female
115.8
142_1
61 years, female
115.4
377_1
82 years, female
112.3
307_1
66 years, female
108.3
295_1
61 years, female
107.0
162_1
79 years, female
105.9
384_1
83 years, male
105.7
177_1
74 years, male
105.4
316_1
62 years, male
105.4
518_1
75 years, female
103.7
120_1
70 years, female
103.6
291_1
76 years, male
103.5
217_1
76 years, male
103.4
405_1
91 years, male
101.4
266_1
85 years, male
101.3
324_1
76 years, male
100.4
292_1
71 years, male
99.7
526_1
61 years, male
99.6
517_1
88 years, male
99.4
43_1
64 years, female
98.9
145_1
84 years, male
98.8
311_1
78 years, male
95.2
288_1
66 years, female
94.2
189_1
76 years, male
93.2
246_1
77 years, male
92.0
396_1
62 years, male
91.5
254_1
77 years, female
91.1
468_1
89 years, male
91.1
480_1
63 years, male
90.8
126_1
63 years, male
89.6
348_1
84 years, male
88.8
265_1
87 years, male
87.7
308_1
70 years, female
87.5
32_1
67 years, male
87.4
251_1
78 years, male
85.0
315_1
62 years, female
85.0
322_1
76 years, male
84.4
18_1
88 years, male
84.3
314_1
67 years, male
84.2
415_1
77 years, female
82.3
2_1
77 years, female
80.0
81_1
67 years, male
78.3
414_1
84 years, female
75.9
466_1
57 years, female
74.1
17_1
71 years, male
70.2
490_1
67 years, female
69.9
139_1
64 years, female
67.8
495_1
57 years, female
65.8
89_1
63 years, male
57.3
149_1
88 years, male
53.8
501_1
88 years, male
44.7
413_1
59 years, female
41.1
491_1
89 years, female
39.9
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RETINA - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
The Human Protein Atlas project is funded
