A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
1.6
nTPM
Monaco:
3.1
nTPM
Schmiedel:
45.2
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
1.6
HPA sample
nTPM
Classical monocyte nTPM: 0.9
Samples: 6
Max nTPM: 1.2
Min nTPM: 0.5
P10809_1003
0.5
P10809_1020
0.9
P10809_1039
0.8
P10809_1058
1.2
P10809_1080
1.1
P10809_1107
0.9
Intermediate monocyte nTPM: 0.7
Samples: 6
Max nTPM: 2.2
Min nTPM: 0.0
P10809_1004
0.0
P10809_1023
0.0
P10809_1042
0.4
P10809_1061
0.2
P10809_1081
1.4
P10809_1108
2.2
Non-classical monocyte nTPM: 1.6
Samples: 5
Max nTPM: 5.1
Min nTPM: 0.3
P10809_1005
0.7
P10809_1053
0.3
P10809_1072
5.1
P10809_1082
1.0
P10809_1109
0.9
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
3.1
Monaco sample
nTPM
Classical monocyte nTPM: 1.9
Samples: 4
Max nTPM: 5.4
Min nTPM: 0.0
RHH5313_R3680
0.0
RHH5221_R3593
0.0
RHH5250_R3622
2.3
RHH5279_R3651
5.4
Intermediate monocyte nTPM: 3.1
Samples: 4
Max nTPM: 4.4
Min nTPM: 2.5
RHH5314_R3681
2.5
RHH5222_R3594
4.4
RHH5251_R3623
2.9
RHH5280_R3652
2.6
Non-classical monocyte nTPM: 3.1
Samples: 4
Max nTPM: 5.6
Min nTPM: 0.0
RHH5315_R3682
0.0
RHH5223_R3595
4.7
RHH5252_R3624
1.9
RHH5281_R3653
5.6
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
45.2
Schmiedel sample id
TPM
Classical monocyte TPM: 45.2
Samples: 91
Max TPM: 69.9
Min TPM: 18.4
MONOCYTES_1
69.9
MONOCYTES_2
69.2
MONOCYTES_3
65.4
MONOCYTES_4
65.3
MONOCYTES_5
64.7
MONOCYTES_6
62.9
MONOCYTES_7
62.8
MONOCYTES_8
62.8
MONOCYTES_9
62.3
MONOCYTES_10
62.0
MONOCYTES_11
61.7
MONOCYTES_12
59.5
MONOCYTES_13
58.4
MONOCYTES_14
57.2
MONOCYTES_15
57.0
MONOCYTES_16
57.0
MONOCYTES_17
56.8
MONOCYTES_18
56.7
MONOCYTES_19
55.0
MONOCYTES_20
54.9
MONOCYTES_21
54.7
MONOCYTES_22
53.7
MONOCYTES_23
53.0
MONOCYTES_24
52.9
MONOCYTES_25
52.8
MONOCYTES_26
52.3
MONOCYTES_27
51.9
MONOCYTES_28
51.8
MONOCYTES_29
51.3
MONOCYTES_30
51.3
MONOCYTES_31
50.5
MONOCYTES_32
50.4
MONOCYTES_33
50.2
MONOCYTES_34
50.1
MONOCYTES_35
49.8
MONOCYTES_36
49.0
MONOCYTES_37
48.3
MONOCYTES_38
48.0
MONOCYTES_39
48.0
MONOCYTES_40
48.0
MONOCYTES_41
47.5
MONOCYTES_42
47.4
MONOCYTES_43
47.4
MONOCYTES_44
47.2
MONOCYTES_45
46.9
MONOCYTES_46
46.6
MONOCYTES_47
46.0
MONOCYTES_48
45.3
MONOCYTES_49
45.2
MONOCYTES_50
45.1
MONOCYTES_51
44.9
MONOCYTES_52
44.8
MONOCYTES_53
44.8
MONOCYTES_54
44.5
MONOCYTES_55
44.3
MONOCYTES_56
44.0
MONOCYTES_57
43.9
MONOCYTES_58
42.3
MONOCYTES_59
42.2
MONOCYTES_60
41.5
MONOCYTES_61
40.3
MONOCYTES_62
40.0
MONOCYTES_63
39.9
MONOCYTES_64
39.1
MONOCYTES_65
39.0
MONOCYTES_66
38.9
MONOCYTES_67
37.7
MONOCYTES_68
37.3
MONOCYTES_69
36.2
MONOCYTES_70
35.2
MONOCYTES_71
34.7
MONOCYTES_72
34.3
MONOCYTES_73
33.6
MONOCYTES_74
33.3
MONOCYTES_75
33.0
MONOCYTES_76
32.8
MONOCYTES_77
31.3
MONOCYTES_78
30.4
MONOCYTES_79
30.4
MONOCYTES_80
30.1
MONOCYTES_81
27.6
MONOCYTES_82
27.3
MONOCYTES_83
26.1
MONOCYTES_84
25.7
MONOCYTES_85
25.3
MONOCYTES_86
25.2
MONOCYTES_87
25.2
MONOCYTES_88
24.0
MONOCYTES_89
22.3
MONOCYTES_90
21.5
MONOCYTES_91
18.4
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Non-classical monocyte TPM: 42.8
Samples: 90
Max TPM: 74.9
Min TPM: 9.1
M2_1
74.9
M2_2
72.3
M2_3
71.3
M2_4
67.8
M2_5
66.6
M2_6
64.9
M2_7
64.5
M2_8
64.0
M2_9
62.8
M2_10
61.1
M2_11
60.8
M2_12
60.8
M2_13
58.9
M2_14
58.5
M2_15
57.6
M2_16
57.6
M2_17
57.5
M2_18
57.3
M2_19
56.3
M2_20
55.5
M2_21
55.0
M2_22
54.8
M2_23
54.2
M2_24
53.9
M2_25
53.2
M2_26
53.2
M2_27
53.1
M2_28
52.8
M2_29
52.4
M2_30
51.7
M2_31
49.9
M2_32
49.6
M2_33
49.4
M2_34
49.2
M2_35
48.7
M2_36
48.6
M2_37
48.5
M2_38
47.6
M2_39
46.9
M2_40
46.7
M2_41
46.3
M2_42
46.1
M2_43
45.9
M2_44
45.7
M2_45
44.7
M2_46
44.5
M2_47
44.2
M2_48
43.7
M2_49
42.0
M2_50
41.8
M2_51
41.6
M2_52
41.1
M2_53
40.6
M2_54
40.5
M2_55
40.4
M2_56
39.6
M2_57
39.4
M2_58
38.5
M2_59
38.2
M2_60
38.1
M2_61
37.9
M2_62
36.7
M2_63
35.9
M2_64
33.8
M2_65
33.5
M2_66
32.8
M2_67
32.3
M2_68
31.1
M2_69
30.6
M2_70
29.9
M2_71
28.7
M2_72
28.1
M2_73
28.1
M2_74
25.7
M2_75
25.4
M2_76
24.4
M2_77
23.2
M2_78
22.7
M2_79
21.7
M2_80
21.3
M2_81
19.8
M2_82
19.8
M2_83
19.1
M2_84
18.6
M2_85
18.0
M2_86
15.8
M2_87
15.1
M2_88
11.3
M2_89
9.7
M2_90
9.1
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