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  • PCSK1N
BRAIN HIPPOCAMPAL FORMATION Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
PRIMARY MOUSE DATA
ANTIBODIES
AND
VALIDATION
Brain proteome
Hippocampal formation
Brain methods
HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Medium
Neuronal cells: Not detected
Mouse brain, Intensity
Hippocampal formationi

Protein expression in mouse brain using immunofluorescence is reported as mean fluorescence intensity.

89.527
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:421.9 nTPM
HPA Brain:598.7 nTPM
GTEx:421.9 nTPM
FANTOM5:350.9 Scaled Tags Per Million
Pig:849.7 nTPM
Mouse:24.7 nTPM
Allen mouse:12.7 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

HIPPOCAMPUS - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA003925Antibody HPA064734
Glial cells MediumMedium
Neuronal cells Not detectedNot detected





HIPPOCAMPAL FORMATION - Mouse brain profilei

Protein expression in mouse brain using immunofluorescence is reported as fluorescence intensity.

, antibody HPA003925
Hippocampal formation mean intensity 89.527
intensityi

Protein expression in mouse brain using immunofluorescence is reported as mean fluorescence intensity.

FRONT BACK
Polymorph layer of the dentate gyrus 72.631
Molecular layer of the dentate gyrus 18.071
Granular dentate gyrus 26.416
CA1 - oriens layer 14.115
CA1 - pyramidal layer 16.977
CA1 - radiatum layer 15.521
CA2 - oriens layer 21.429
CA2 - pyramidal layer 21.647
CA2 - radiatum layer 20.421
CA3 - oriens layer 19.198
CA3 - pyramidal layer 17.032
CA3 - radiatum layer 16.498
Stratum lucidum 89.527
Lacunosum moleculare 15.092
Subiculum 17.022

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

598.7
Sample id Sample description nTPM
Hippocampus
nTPM: 546.6
2621 Female, age 67, right hemisphere 645.6
1898 Male, age 80, left hemisphere 629.5
2148 Female, age 91, left hemisphere 589.6
2529 Female, age 94, left hemisphere 552.6
1855 Male, age 76, left hemisphere 500.9
1911 Female, age 85, right hemisphere 361.6
Dentate gyrus
nTPM: 598.7
2530 Female, age 94, left hemisphere 888.1
2531 Female, age 67, both hemispheres 704.2
1927 Female, age 91, both hemispheres 606.3
2246 Female, age 85, both hemispheres 492.7
2010 Male, age 76, both hemispheres 488.7
2528 Male, age 74, both hemispheres 412.4
Entorhinal gyrus
nTPM: 526.8
2764 Male, age 80, right hemisphere 683.1
2613 Female, age 94, left hemisphere 593.9
1787 Male, age 76, left hemisphere 518.2
2117 Female, age 91, right hemisphere 468.1
1938 Female, age 85, left hemisphere 452.1
2686 Male, age 75, right hemisphere 445.6
Hippocampus, CA1
nTPM: 491.8
2749 Male, age 80, left hemisphere 727.9
2045 Male, age 76, both hemispheres 493.9
1873 Female, age 85, both hemispheres 444.1
2527 Male, age 74, both hemispheres 436.5
2082 Female, age 91, right hemisphere 356.4
Hippocampus, CA2
nTPM: 491.6
1963 Male, age 80, left hemisphere 679.1
2437 Female, age 94, left hemisphere 605.2
1892 Male, age 76, both hemispheres 482.3
2113 Female, age 91, right hemisphere 431.5
1940 Female, age 85, left hemisphere 418.1
2249 Male, age 74, both hemispheres 333.3
Hippocampus, CA3
nTPM: 513.2
2861 Female, age 67, both hemispheres 780.6
2620 Female, age 94, left hemisphere 664.6
2137 Male, age 80, left hemisphere 503.7
2436 Male, age 74, both hemispheres 436.5
1867 Male, age 76, both hemispheres 387.9
1891 Female, age 85, both hemispheres 305.8
Parahippocampal cortex
nTPM: 519.3
2245 Female, age 91, both hemispheres 779.0
2250 Female, age 67, right hemisphere 622.2
2622 Female, age 67, right hemisphere 575.9
2693 Female, age 94, both hemispheres 548.9
2532 Female, age 72, left hemisphere 518.6
1990 Female, age 91, right hemisphere 516.8
1933 Female, age 85, both hemispheres 458.7
1850 Male, age 80, both hemispheres 433.2
2018 Male, age 76, both hemispheres 404.2
2692 Male, age 74, both hemispheres 335.4
Perirhinal gyrus
nTPM: 583.0
1794 Male, age 80, right hemisphere 694.3
2521 Female, age 94, right hemisphere 685.7
1847 Female, age 91, left hemisphere 600.1
2848 Male, age 76, right hemisphere 492.9
1841 Female, age 85, right hemisphere 442.1
Subiculum
nTPM: 412.4
1977 Female, age 85, both hemispheres 531.1
2619 Male, age 74, both hemispheres 489.8
2438 Female, age 94, left hemisphere 413.9
2729 Female, age 91, right hemisphere 385.8
1901 Male, age 80, both hemispheres 363.9
2042 Male, age 76, both hemispheres 289.7

HIPPOCAMPAL FORMATION - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

421.9
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 421.9
Samples: 255

Max nTPM: 1289.2
Min nTPM: 25.0
Std nTPM: 211.2
Median nTPM: 394.6
GTEX-1F52S-0011-R1a-SM-9OSX9 60-69 years, female 1289.2
GTEX-1JJ6O-0011-R1b-SM-F2I2M 60-69 years, male 1049.9
GTEX-1O9I2-0011-R1a-SM-F2TAW 50-59 years, male 974.8
GTEX-1399T-0011-R1b-SM-5DUWN 60-69 years, male 925.9
GTEX-1JJEA-0011-R1b-SM-F6495 60-69 years, male 913.5
GTEX-1LG7Y-0011-R1a-SM-EYYWV 50-59 years, male 911.7
GTEX-WL46-0011-R1A-SM-3LK6M 50-59 years, male 892.6
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 888.4
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 873.7
GTEX-1F6I4-0011-R1a-SM-9OSWU 60-69 years, male 849.6
GTEX-WVLH-0011-R1A-SM-4MVOK 50-59 years, male 834.6
GTEX-1J1OQ-0011-R1a-SM-A9G1Z 40-49 years, female 830.8
GTEX-13OW7-0011-R1b-SM-5L3HF 50-59 years, male 830.7
GTEX-139TT-0011-R1a-SM-5LZVD 60-69 years, male 823.6
GTEX-1MCQQ-0011-R1a-SM-F341G 60-69 years, male 821.6
GTEX-1EX96-0011-R1a-SM-CE6R5 50-59 years, male 800.9
GTEX-1E1VI-0011-R1a-SM-ARZMM 50-59 years, male 793.5
GTEX-1PPGY-0011-R1b-SM-G8LN3 60-69 years, male 776.2
GTEX-1MJK2-0011-R1b-SM-F649H 50-59 years, male 761.4
GTEX-13O3Q-0011-R1b-SM-5KM3L 50-59 years, male 754.0
GTEX-1RQEC-0011-R1b-SM-F2I2E 60-69 years, male 749.3
GTEX-12WSH-0011-R1a-SM-5GU5V 50-59 years, male 736.4
GTEX-12126-0011-R1a-SM-GJ3Q8 20-29 years, male 733.6
GTEX-15EO6-0011-R1b-SM-H7OGP 50-59 years, male 724.3
GTEX-1A3MX-0011-R1b-SM-7P8PH 60-69 years, male 719.2
GTEX-1P4AB-0011-R1b-SM-F2TAV 50-59 years, male 713.3
GTEX-1KD4Q-0011-R1a-SM-F3K4Z 40-49 years, male 709.5
GTEX-X585-0011-R1B-SM-46MVE 50-59 years, male 706.4
GTEX-13NYB-0011-R1b-SM-5KM4F 40-49 years, male 697.2
GTEX-1LSVX-0011-R1a-SM-F3K5F 60-69 years, male 692.3
GTEX-12WSD-0011-R1b-SM-5LZVY 60-69 years, female 691.6
GTEX-1A8G6-0011-R1a-SM-7P8PC 60-69 years, male 689.8
GTEX-ZF28-0011-R1a-SM-4WWD1 60-69 years, male 687.3
GTEX-13FXS-0011-R1a-SM-5K7U6 50-59 years, male 668.8
GTEX-11OF3-0011-R1b-SM-H65ZT 60-69 years, male 668.5
GTEX-16Z82-0011-R1b-SM-7EPHZ 60-69 years, male 666.0
GTEX-15DYW-0011-R1a-SM-H6Q6Q 60-69 years, female 662.5
GTEX-14PN4-0011-R1b-SM-69LP8 50-59 years, male 651.0
GTEX-131XH-0011-R1a-SM-5DUWA 50-59 years, male 649.5
GTEX-1CB4G-0011-R1b-SM-9QEHT 60-69 years, male 648.2
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 640.6
GTEX-1MA7X-0011-R1b-SM-F2TAB 60-69 years, male 639.4
GTEX-1H3VE-0011-R1a-SM-A9G1K 40-49 years, male 635.3
GTEX-13FTY-0011-R1a-SM-5LZXE 40-49 years, female 634.2
GTEX-12WSE-0011-R1b-SM-5GU4V 20-29 years, male 630.8
GTEX-13PDP-0011-R1a-SM-5PNX5 60-69 years, male 616.3
GTEX-1GMR8-0011-R1b-SM-CJI2O 50-59 years, female 613.8
GTEX-1B8SF-0011-R1b-SM-7P8Q8 60-69 years, male 607.6
GTEX-RNOR-0011-R1A-SM-CNNP5 50-59 years, female 607.6
GTEX-1GN73-0011-R1a-SM-CKZNT 60-69 years, male 592.5
GTEX-11DYG-0011-R1a-SM-GI4X6 60-69 years, male 581.6
GTEX-1C64N-0011-R1b-SM-7P8Q7 50-59 years, male 576.7
GTEX-1IOXB-0011-R1a-SM-D4P27 50-59 years, male 575.9
GTEX-1I1HK-0011-R1b-SM-CM2T7 60-69 years, male 575.8
GTEX-1B996-0011-R1b-SM-7P8PO 60-69 years, male 575.7
GTEX-1I19N-0011-R1b-SM-GOR1A 70-79 years, male 574.1
GTEX-11DXW-0011-R1a-SM-DNZZD 40-49 years, male 567.9
GTEX-16YQH-0011-R1a-SM-7LT8R 30-39 years, male 567.5
GTEX-ZAJG-0011-R1a-SM-GQ1CV 50-59 years, female 566.1
GTEX-1KWVE-0011-R1a-SM-F649B 30-39 years, male 565.8
GTEX-1GTWX-0011-R1a-SM-CE6RL 60-69 years, male 564.0
GTEX-11ZUS-0011-R1a-SM-GI4W7 30-39 years, male 562.1
GTEX-1LKK1-0011-R1b-SM-F2TAF 50-59 years, female 558.6
GTEX-1CAV2-0011-R1a-SM-ARZML 40-49 years, female 555.7
GTEX-12WSM-0011-R1a-SM-5LZW6 60-69 years, male 554.6
GTEX-1EMGI-0011-R1b-SM-9OSWZ 60-69 years, male 553.9
GTEX-13FLW-0011-R1b-SM-5LZX2 50-59 years, male 546.6
GTEX-145MH-0011-R1b-SM-5PNWY 50-59 years, male 543.0
GTEX-1F75W-0011-R1a-SM-ARU81 60-69 years, male 540.8
GTEX-1PIIG-0011-R1a-SM-F649P 30-39 years, male 540.4
GTEX-1IKK5-0011-R1b-SM-CE6SQ 60-69 years, male 539.4
GTEX-1I1GS-0011-R1a-SM-CJI43 60-69 years, male 539.1
GTEX-1OJC4-0011-R1a-SM-F2TAZ 50-59 years, female 531.3
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 528.2
GTEX-13112-0011-R1b-SM-5HL7K 50-59 years, male 524.6
GTEX-1B933-0011-R1b-SM-9QEGW 50-59 years, female 524.2
GTEX-1JMPZ-0011-R1b-SM-F6497 30-39 years, male 521.9
GTEX-131YS-0011-R1a-SM-5DUXC 60-69 years, female 505.1
GTEX-1C6VR-0011-R1a-SM-7MXUE 60-69 years, male 500.9
GTEX-YFC4-0011-R1a-SM-4V6EH 40-49 years, female 491.5
GTEX-1EH9U-0011-R1b-SM-CJI2B 60-69 years, male 489.0
GTEX-1R9K4-0011-R1a-SM-F342F 60-69 years, male 487.6
GTEX-1F75A-0011-R1b-SM-CE6RA 50-59 years, male 487.2
GTEX-N7MS-0011-R1a-SM-2HMJG 60-69 years, male 485.9
GTEX-1R9PO-0011-R1b-SM-F2I2G 60-69 years, female 485.3
GTEX-1N2EF-0011-R1a-SM-F2TAT 60-69 years, male 483.2
GTEX-S7SE-0011-R1A-SM-2XCDE 50-59 years, male 482.3
GTEX-1HSMO-0011-R1a-SM-CM2SV 60-69 years, male 479.1
GTEX-ZVZQ-0011-R1a-SM-57WBU 60-69 years, female 475.7
GTEX-13OW6-0011-R1a-SM-5L3HQ 50-59 years, male 474.6
GTEX-13JUV-0011-R1a-SM-5LZY4 40-49 years, female 473.1
GTEX-139T8-0011-R1a-SM-5HL75 60-69 years, male 471.1
GTEX-1KANB-0011-R1a-SM-F3K5M 50-59 years, male 468.1
GTEX-11ONC-0011-R1a-SM-57WD4 60-69 years, male 464.9
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y 40-49 years, male 459.4
GTEX-13CF2-0011-R1a-SM-5LZY1 60-69 years, male 458.7
GTEX-1F48J-0011-R1a-SM-9QEIC 50-59 years, female 455.2
GTEX-1RDX4-0011-R1a-SM-F3K5H 50-59 years, female 451.1
GTEX-17F97-0011-R1b-SM-7IGM9 50-59 years, male 448.5
GTEX-YJ89-0011-R1a-SM-4RGLS 60-69 years, male 445.0
GTEX-1LVAO-0011-R1a-SM-F649O 60-69 years, male 444.9
GTEX-14JIY-0011-R1a-SM-68713 60-69 years, male 443.2
GTEX-1H3NZ-0011-R1a-SM-CKZP5 60-69 years, male 441.5
GTEX-145LU-0011-R1a-SM-5Q5CE 50-59 years, male 439.0
GTEX-17HHY-0011-R1a-SM-7189V 50-59 years, male 437.3
GTEX-14BIM-0011-R1a-SM-69LQI 60-69 years, female 435.2
GTEX-117XS-0011-R1b-SM-GJ3PQ 60-69 years, male 433.4
GTEX-1LVA9-0011-R1b-SM-F2TB5 50-59 years, male 433.2
GTEX-1GN1U-0011-R1a-SM-CJI25 50-59 years, female 430.8
GTEX-17HG3-0011-R1a-SM-7LG6H 30-39 years, female 429.9
GTEX-RU72-0011-R1A-SM-HAUZG 50-59 years, female 428.1
GTEX-1N5O9-0011-R1b-SM-F3K4W 60-69 years, male 425.8
GTEX-11GS4-0011-R1a-SM-DO129 60-69 years, male 425.7
GTEX-13RTL-0011-R1a-SM-5PNZ8 40-49 years, male 422.4
GTEX-13N1W-0011-R1b-SM-5MR4T 70-79 years, male 421.3
GTEX-1POEN-0011-R1b-SM-F3K3K 30-39 years, female 417.2
GTEX-13FHP-0011-R1b-SM-5K7XL 50-59 years, male 416.7
GTEX-1H1ZS-0011-R1b-SM-A9G1E 70-79 years, male 414.4
GTEX-1AX9I-0011-R1b-SM-7RHG2 60-69 years, male 413.1
GTEX-1H1CY-0011-R1a-SM-CKZOZ 60-69 years, female 412.7
GTEX-17JCI-0011-R1b-SM-718A3 60-69 years, female 407.9
GTEX-1HGF4-0011-R1a-SM-CJI3S 60-69 years, male 407.2
GTEX-Y8DK-0011-R1A-SM-4RGLO 60-69 years, male 406.4
GTEX-WHSE-0011-R1A-SM-3P5ZK 20-29 years, male 405.4
GTEX-14E6D-0011-R1b-SM-5YYAW 50-59 years, male 399.9
GTEX-OHPN-0011-R1A-SM-2I5GB 60-69 years, female 398.9
GTEX-15DCD-0011-R1b-SM-6LPIJ 70-79 years, female 395.8
GTEX-ZZPT-0011-R1b-SM-GNINL 50-59 years, male 394.6
GTEX-11DXY-0011-R1b-SM-GI4VQ 60-69 years, male 393.9
GTEX-13NYS-0011-R1b-SM-5MR55 60-69 years, male 383.4
GTEX-1IY9M-0011-R1a-SM-EXURZ 60-69 years, male 378.1
GTEX-1EKGG-0011-R1b-SM-9QEI1 60-69 years, male 372.9
GTEX-WWYW-0011-R1A-SM-3TW8G 50-59 years, female 372.2
GTEX-13PVQ-0011-R1b-SM-GJ3RQ 50-59 years, male 367.0
GTEX-1GF9W-0011-R1a-SM-9QEIQ 60-69 years, male 364.1
GTEX-13OW8-0011-R1a-SM-5L3HI 60-69 years, male 362.6
GTEX-1A32A-0011-R1a-SM-7P8SQ 50-59 years, female 361.8
GTEX-1ICLZ-0011-R1b-SM-A9SM3 60-69 years, male 357.4
GTEX-14ASI-0011-R1b-SM-5S2TY 60-69 years, male 357.3
GTEX-1GN2E-0011-R1b-SM-CE6RJ 60-69 years, male 357.0
GTEX-1PWST-0011-R1b-SM-F2I38 70-79 years, male 353.6
GTEX-1IDJH-0011-R1b-SM-ARU6U 70-79 years, male 352.4
GTEX-1HSKV-0011-R1b-SM-CMKH7 60-69 years, male 352.3
GTEX-1B8L1-0011-R1a-SM-7P8SS 60-69 years, male 350.1
GTEX-11WQC-0011-R1b-SM-DO932 60-69 years, male 350.0
GTEX-12WSF-0011-R1a-SM-5DUVI 70-79 years, male 349.1
GTEX-1NV8Z-0011-R1b-SM-F647K 60-69 years, male 346.5
GTEX-11EI6-0011-R1a-SM-DO93L 60-69 years, male 345.5
GTEX-1QP6S-0011-R1b-SM-F3K59 40-49 years, male 345.4
GTEX-1RNSC-0011-R1b-SM-F342D 60-69 years, male 345.1
GTEX-13G51-0011-R1a-SM-5LZYR 60-69 years, male 339.1
GTEX-15ER7-0011-R1b-SM-7KUE1 20-29 years, female 339.0
GTEX-14PQA-0011-R1b-SM-6EU1G 50-59 years, female 337.0
GTEX-1JMQK-0011-R1a-SM-F6484 60-69 years, male 335.7
GTEX-15SHU-0011-R1b-SM-H6Q7U 40-49 years, female 333.7
GTEX-13N2G-0011-R1b-SM-5MR3G 60-69 years, male 330.3
GTEX-1LSNL-0011-R1a-SM-F3K51 50-59 years, male 326.7
GTEX-15CHQ-0011-R1a-SM-COH27 60-69 years, male 324.8
GTEX-ZDXO-0011-R1a-SM-4WKF4 60-69 years, male 320.9
GTEX-17HII-0011-R1b-SM-7MGVW 50-59 years, male 320.5
GTEX-14JFF-0011-R1b-SM-G8W88 60-69 years, male 317.3
GTEX-1JMQJ-0011-R1b-SM-F2T9P 50-59 years, male 316.7
GTEX-12WSA-0011-R1b-SM-GI4VI 60-69 years, male 316.0
GTEX-1QMI2-0011-R1b-SM-F3K5Q 60-69 years, male 316.0
GTEX-16XZZ-0011-R1a-SM-7LTAH 60-69 years, male 307.1
GTEX-14PJO-0011-R1b-SM-6AJAK 60-69 years, male 306.6
GTEX-1JMOU-0011-R1b-SM-F341B 60-69 years, female 305.2
GTEX-1GZHY-0011-R1a-SM-CE6RR 50-59 years, female 301.4
GTEX-ZUA1-0011-R1a-SM-4YCE2 40-49 years, male 301.4
GTEX-1I1GQ-0011-R1a-SM-CY8GG 50-59 years, male 300.9
GTEX-1192X-0011-R1b-SM-GI4VU 50-59 years, male 299.0
GTEX-1LH75-0011-R1a-SM-F341Y 50-59 years, female 298.0
GTEX-ZYFD-0011-R1b-SM-GRR1T 50-59 years, male 297.3
GTEX-1H4P4-0011-R1b-SM-CL54V 50-59 years, male 293.8
GTEX-ZYY3-0011-R1b-SM-GPI92 60-69 years, female 293.8
GTEX-1313W-0011-R1b-SM-5EQ4A 50-59 years, female 292.1
GTEX-1HBPI-0011-R1b-SM-A9SKF 50-59 years, male 288.0
GTEX-13NZ8-0011-R1b-SM-5KM3V 60-69 years, female 285.7
GTEX-X4XX-0011-R1B-SM-3P622 60-69 years, male 285.6
GTEX-14PJM-0011-R1a-SM-CNPO3 50-59 years, female 285.3
GTEX-17EVP-0011-R1a-SM-7DHLA 40-49 years, male 285.0
GTEX-14BMV-0011-R1b-SM-G9ERL 50-59 years, male 283.7
GTEX-1F6IF-0011-R1b-SM-9WG78 60-69 years, male 282.5
GTEX-1JMLX-0011-R1b-SM-G9ERV 50-59 years, male 281.5
GTEX-13FHO-0011-R1b-SM-5KLZG 60-69 years, male 280.2
GTEX-14C5O-0011-R1b-SM-6AJBW 60-69 years, male 280.0
GTEX-14E6C-0011-R1a-SM-G8W86 40-49 years, male 278.1
GTEX-16GPK-0011-R1b-SM-7EWDH 60-69 years, male 275.6
GTEX-1RQED-0011-R1a-SM-F3K5W 60-69 years, male 274.8
GTEX-1C6VQ-0011-R1a-SM-7P8Q2 50-59 years, male 271.7
GTEX-132Q8-0011-R1a-SM-5EGLK 60-69 years, male 268.1
GTEX-Q2AG-0011-R1A-SM-2HMJI 40-49 years, female 264.9
GTEX-13OW5-0011-R1b-SM-5L3GE 60-69 years, male 261.0
GTEX-13SLX-0011-R1a-SM-H6Q8N 50-59 years, female 258.9
GTEX-N7MT-0011-R1a-SM-CNPO1 60-69 years, female 253.3
GTEX-14DAQ-0011-R1a-SM-G8W85 60-69 years, female 251.1
GTEX-145LS-0011-R1b-SM-5PNUP 60-69 years, female 251.0
GTEX-13OVL-0011-R1a-SM-5L3H5 50-59 years, male 250.7
GTEX-13X6I-0011-R1b-SM-5PNZC 60-69 years, male 248.9
GTEX-13QJC-0011-R1b-SM-5S2UU 60-69 years, female 247.3
GTEX-1H3O1-0011-R1b-SM-CL554 60-69 years, male 246.4
GTEX-1H1DG-0011-R1b-SM-CKZP1 70-79 years, male 241.3
GTEX-P44H-0011-R1A-SM-3NM8J 40-49 years, male 241.3
GTEX-11GSP-0011-R1a-SM-9QEJ3 60-69 years, female 239.3
GTEX-1E2YA-0011-R1b-SM-CJI29 50-59 years, male 237.9
GTEX-11NV4-0011-R1a-SM-GINAK 60-69 years, male 236.0
GTEX-13S7M-0011-R1b-SM-5PNZE 60-69 years, female 232.7
GTEX-11PRG-0011-R1b-SM-H7OHD 50-59 years, male 231.9
GTEX-15RJE-0011-R1b-SM-H6Q7N 40-49 years, male 225.8
GTEX-12ZZX-0011-R1a-SM-5EQ6B 40-49 years, female 224.2
GTEX-13OVJ-0011-R1b-SM-5L3I6 50-59 years, female 224.0
GTEX-14LZ3-0011-R1a-SM-69LP5 60-69 years, female 223.3
GTEX-1N2EE-0011-R1a-SM-F3K5K 60-69 years, male 222.9
GTEX-1JN6P-0011-R1b-SM-G8LL3 60-69 years, male 222.3
GTEX-13PLJ-0011-R1a-SM-GJ3QF 60-69 years, female 221.2
GTEX-11H98-0011-R1a-SM-GIN8O 50-59 years, male 219.7
GTEX-12ZZZ-0011-R1a-SM-GIN8I 60-69 years, male 218.9
GTEX-WZTO-0011-R1B-SM-3NMAR 40-49 years, male 218.0
GTEX-12ZZY-0011-R1a-SM-GIN9E 60-69 years, male 217.0
GTEX-13SLW-0011-R1a-SM-5S2W7 70-79 years, male 213.1
GTEX-144GO-0011-R1a-SM-5PNWO 60-69 years, male 212.5
GTEX-ZAB4-0011-R1a-SM-4RGNO 40-49 years, male 208.6
GTEX-ZAK1-0011-R1a-SM-GRR1R 50-59 years, female 207.9
GTEX-17MF6-0011-R1a-SM-72D6O 40-49 years, male 203.8
GTEX-183WM-0011-R1a-SM-718A8 70-79 years, female 200.0
GTEX-1I1GV-0011-R1a-SM-CL559 60-69 years, male 199.4
GTEX-NPJ7-0011-R1a-SM-3GACT 60-69 years, female 196.8
GTEX-11TUW-0011-R1a-SM-DO92S 60-69 years, male 195.7
GTEX-17EVQ-0011-R1a-SM-7189S 70-79 years, male 195.3
GTEX-13JVG-0011-R1a-SM-5KM32 60-69 years, male 189.2
GTEX-1LB8K-0011-R1b-SM-EZ6MV 50-59 years, male 182.3
GTEX-11GSO-0011-R1b-SM-57WD3 60-69 years, male 177.6
GTEX-11ZTS-0011-R1a-SM-5BC71 60-69 years, female 177.6
GTEX-13NZA-0011-R1b-SM-5LUAF 60-69 years, male 172.6
GTEX-1JMQL-0011-R1a-SM-F3K4U 50-59 years, female 172.3
GTEX-11UD1-0011-R1b-SM-5BC7D 40-49 years, female 165.5
GTEX-1BAJH-0011-R1a-SM-7P8SV 70-79 years, male 160.8
GTEX-14E7W-0011-R1b-SM-5YYAT 70-79 years, male 154.6
GTEX-11ZVC-0011-R1b-SM-5BC6M 50-59 years, female 142.5
GTEX-13VXU-0011-R1a-SM-GINAT 50-59 years, male 140.2
GTEX-13RTJ-0011-R1a-SM-5O9D9 60-69 years, male 139.3
GTEX-14ABY-0011-R1a-SM-6EU2W 50-59 years, male 139.3
GTEX-15UF6-0011-R1a-SM-9QEGH 70-79 years, female 131.1
GTEX-13QIC-0011-R1a-SM-5O9CJ 60-69 years, female 129.6
GTEX-12696-0011-R1a-SM-GHWPW 60-69 years, male 128.6
GTEX-T6MN-0011-R1A-SM-32QOY 50-59 years, male 123.3
GTEX-XMD1-0011-R1A-SM-4AT4C 60-69 years, male 111.7
GTEX-1212Z-0011-R1b-SM-5BC72 60-69 years, male 95.6
GTEX-QVUS-0011-R1A-SM-3GAD2 60-69 years, female 92.1
GTEX-11TTK-0011-R1b-SM-GIN92 60-69 years, female 86.2
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 83.4
GTEX-1CB4J-0011-R1a-SM-9WG64 60-69 years, male 74.4
GTEX-UTHO-0011-R1A-SM-3GIJO 60-69 years, male 60.8
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 37.6
GTEX-NPJ8-0011-R1a-SM-33HCB 40-49 years, male 25.0
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

350.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 350.9
FF:10169-103B7 60 years, female 410.2
FF:10153-102I9 76 years, female 291.6

HIPPOCAMPAL FORMATION - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

849.7
Pig sample Sample description nTPM
Subiculum
nTPM: 812.4
Samples: 4

Max nTPM: 1247.9
Min nTPM: 568.8
Sample A Female 1247.9
Sample B Female 712.3
Sample C Male 720.6
Sample D Male 568.8
Dorsal hippocampus
nTPM: 750.0
Samples: 4

Max nTPM: 950.8
Min nTPM: 491.4
Sample A Female 950.8
Sample B Female 711.0
Sample C Male 846.6
Sample D Male 491.4
Entorhinal cortex
nTPM: 805.5
Samples: 4

Max nTPM: 1038.4
Min nTPM: 606.5
Sample A Female 764.2
Sample B Female 813.0
Sample C Male 1038.4
Sample D Male 606.5
Ventral hippocampus
nTPM: 849.7
Samples: 4

Max nTPM: 1182.8
Min nTPM: 608.8
Sample A Female 956.9
Sample B Female 608.8
Sample C Male 1182.8
Sample D Male 650.3

HIPPOCAMPAL FORMATION - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

24.7
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 24.7
Samples: 4

Max nTPM: 34.1
Min nTPM: 17.1
Sample A Male 29.5
Sample B Male 34.1
Sample C Female 18.2
Sample D Female 17.1
Hippocampal formation
nTPM: 19.6
Samples: 4

Max nTPM: 25.8
Min nTPM: 14.6
Sample A Male 16.6
Sample B Male 21.4
Sample C Female 14.6
Sample D Female 25.8

HIPPOCAMPAL FORMATION - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

12.7
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 12.7
79360249 Antisense, RP_071018_01_E06, Mouse strain C57BL/6J (56 days, male) 20.5
777 Antisense, RP_040315_01_19, Mouse strain C57BL/6J (56 days, male) 4.8
778 Antisense, RP_040315_01_19, Mouse strain C57BL/6J (56 days, male) 3.8

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