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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.
Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)
Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
598.7
Sample id
Sample description
nTPM
Hippocampus nTPM: 546.6
2621
Female, age 67, right hemisphere
645.6
1898
Male, age 80, left hemisphere
629.5
2148
Female, age 91, left hemisphere
589.6
2529
Female, age 94, left hemisphere
552.6
1855
Male, age 76, left hemisphere
500.9
1911
Female, age 85, right hemisphere
361.6
Dentate gyrus nTPM: 598.7
2530
Female, age 94, left hemisphere
888.1
2531
Female, age 67, both hemispheres
704.2
1927
Female, age 91, both hemispheres
606.3
2246
Female, age 85, both hemispheres
492.7
2010
Male, age 76, both hemispheres
488.7
2528
Male, age 74, both hemispheres
412.4
Entorhinal gyrus nTPM: 526.8
2764
Male, age 80, right hemisphere
683.1
2613
Female, age 94, left hemisphere
593.9
1787
Male, age 76, left hemisphere
518.2
2117
Female, age 91, right hemisphere
468.1
1938
Female, age 85, left hemisphere
452.1
2686
Male, age 75, right hemisphere
445.6
Hippocampus, CA1 nTPM: 491.8
2749
Male, age 80, left hemisphere
727.9
2045
Male, age 76, both hemispheres
493.9
1873
Female, age 85, both hemispheres
444.1
2527
Male, age 74, both hemispheres
436.5
2082
Female, age 91, right hemisphere
356.4
Hippocampus, CA2 nTPM: 491.6
1963
Male, age 80, left hemisphere
679.1
2437
Female, age 94, left hemisphere
605.2
1892
Male, age 76, both hemispheres
482.3
2113
Female, age 91, right hemisphere
431.5
1940
Female, age 85, left hemisphere
418.1
2249
Male, age 74, both hemispheres
333.3
Hippocampus, CA3 nTPM: 513.2
2861
Female, age 67, both hemispheres
780.6
2620
Female, age 94, left hemisphere
664.6
2137
Male, age 80, left hemisphere
503.7
2436
Male, age 74, both hemispheres
436.5
1867
Male, age 76, both hemispheres
387.9
1891
Female, age 85, both hemispheres
305.8
Parahippocampal cortex nTPM: 519.3
2245
Female, age 91, both hemispheres
779.0
2250
Female, age 67, right hemisphere
622.2
2622
Female, age 67, right hemisphere
575.9
2693
Female, age 94, both hemispheres
548.9
2532
Female, age 72, left hemisphere
518.6
1990
Female, age 91, right hemisphere
516.8
1933
Female, age 85, both hemispheres
458.7
1850
Male, age 80, both hemispheres
433.2
2018
Male, age 76, both hemispheres
404.2
2692
Male, age 74, both hemispheres
335.4
Perirhinal gyrus nTPM: 583.0
1794
Male, age 80, right hemisphere
694.3
2521
Female, age 94, right hemisphere
685.7
1847
Female, age 91, left hemisphere
600.1
2848
Male, age 76, right hemisphere
492.9
1841
Female, age 85, right hemisphere
442.1
Subiculum nTPM: 412.4
1977
Female, age 85, both hemispheres
531.1
2619
Male, age 74, both hemispheres
489.8
2438
Female, age 94, left hemisphere
413.9
2729
Female, age 91, right hemisphere
385.8
1901
Male, age 80, both hemispheres
363.9
2042
Male, age 76, both hemispheres
289.7
HIPPOCAMPAL FORMATION - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
421.9
GTEx sample id
Sample description
nTPM
Brain - Hippocampus Average nTPM: 421.9
Samples: 255
Max nTPM: 1289.2
Min nTPM: 25.0
Std nTPM: 211.2
Median nTPM: 394.6
GTEX-1F52S-0011-R1a-SM-9OSX9
60-69 years, female
1289.2
GTEX-1JJ6O-0011-R1b-SM-F2I2M
60-69 years, male
1049.9
GTEX-1O9I2-0011-R1a-SM-F2TAW
50-59 years, male
974.8
GTEX-1399T-0011-R1b-SM-5DUWN
60-69 years, male
925.9
GTEX-1JJEA-0011-R1b-SM-F6495
60-69 years, male
913.5
GTEX-1LG7Y-0011-R1a-SM-EYYWV
50-59 years, male
911.7
GTEX-WL46-0011-R1A-SM-3LK6M
50-59 years, male
892.6
GTEX-144GL-0011-R1a-SM-5PNZ5
50-59 years, male
888.4
GTEX-1HT8W-0011-R1b-SM-CJI3V
30-39 years, male
873.7
GTEX-1F6I4-0011-R1a-SM-9OSWU
60-69 years, male
849.6
GTEX-WVLH-0011-R1A-SM-4MVOK
50-59 years, male
834.6
GTEX-1J1OQ-0011-R1a-SM-A9G1Z
40-49 years, female
830.8
GTEX-13OW7-0011-R1b-SM-5L3HF
50-59 years, male
830.7
GTEX-139TT-0011-R1a-SM-5LZVD
60-69 years, male
823.6
GTEX-1MCQQ-0011-R1a-SM-F341G
60-69 years, male
821.6
GTEX-1EX96-0011-R1a-SM-CE6R5
50-59 years, male
800.9
GTEX-1E1VI-0011-R1a-SM-ARZMM
50-59 years, male
793.5
GTEX-1PPGY-0011-R1b-SM-G8LN3
60-69 years, male
776.2
GTEX-1MJK2-0011-R1b-SM-F649H
50-59 years, male
761.4
GTEX-13O3Q-0011-R1b-SM-5KM3L
50-59 years, male
754.0
GTEX-1RQEC-0011-R1b-SM-F2I2E
60-69 years, male
749.3
GTEX-12WSH-0011-R1a-SM-5GU5V
50-59 years, male
736.4
GTEX-12126-0011-R1a-SM-GJ3Q8
20-29 years, male
733.6
GTEX-15EO6-0011-R1b-SM-H7OGP
50-59 years, male
724.3
GTEX-1A3MX-0011-R1b-SM-7P8PH
60-69 years, male
719.2
GTEX-1P4AB-0011-R1b-SM-F2TAV
50-59 years, male
713.3
GTEX-1KD4Q-0011-R1a-SM-F3K4Z
40-49 years, male
709.5
GTEX-X585-0011-R1B-SM-46MVE
50-59 years, male
706.4
GTEX-13NYB-0011-R1b-SM-5KM4F
40-49 years, male
697.2
GTEX-1LSVX-0011-R1a-SM-F3K5F
60-69 years, male
692.3
GTEX-12WSD-0011-R1b-SM-5LZVY
60-69 years, female
691.6
GTEX-1A8G6-0011-R1a-SM-7P8PC
60-69 years, male
689.8
GTEX-ZF28-0011-R1a-SM-4WWD1
60-69 years, male
687.3
GTEX-13FXS-0011-R1a-SM-5K7U6
50-59 years, male
668.8
GTEX-11OF3-0011-R1b-SM-H65ZT
60-69 years, male
668.5
GTEX-16Z82-0011-R1b-SM-7EPHZ
60-69 years, male
666.0
GTEX-15DYW-0011-R1a-SM-H6Q6Q
60-69 years, female
662.5
GTEX-14PN4-0011-R1b-SM-69LP8
50-59 years, male
651.0
GTEX-131XH-0011-R1a-SM-5DUWA
50-59 years, male
649.5
GTEX-1CB4G-0011-R1b-SM-9QEHT
60-69 years, male
648.2
GTEX-14LLW-0011-R1a-SM-5ZZVD
70-79 years, female
640.6
GTEX-1MA7X-0011-R1b-SM-F2TAB
60-69 years, male
639.4
GTEX-1H3VE-0011-R1a-SM-A9G1K
40-49 years, male
635.3
GTEX-13FTY-0011-R1a-SM-5LZXE
40-49 years, female
634.2
GTEX-12WSE-0011-R1b-SM-5GU4V
20-29 years, male
630.8
GTEX-13PDP-0011-R1a-SM-5PNX5
60-69 years, male
616.3
GTEX-1GMR8-0011-R1b-SM-CJI2O
50-59 years, female
613.8
GTEX-1B8SF-0011-R1b-SM-7P8Q8
60-69 years, male
607.6
GTEX-RNOR-0011-R1A-SM-CNNP5
50-59 years, female
607.6
GTEX-1GN73-0011-R1a-SM-CKZNT
60-69 years, male
592.5
GTEX-11DYG-0011-R1a-SM-GI4X6
60-69 years, male
581.6
GTEX-1C64N-0011-R1b-SM-7P8Q7
50-59 years, male
576.7
GTEX-1IOXB-0011-R1a-SM-D4P27
50-59 years, male
575.9
GTEX-1I1HK-0011-R1b-SM-CM2T7
60-69 years, male
575.8
GTEX-1B996-0011-R1b-SM-7P8PO
60-69 years, male
575.7
GTEX-1I19N-0011-R1b-SM-GOR1A
70-79 years, male
574.1
GTEX-11DXW-0011-R1a-SM-DNZZD
40-49 years, male
567.9
GTEX-16YQH-0011-R1a-SM-7LT8R
30-39 years, male
567.5
GTEX-ZAJG-0011-R1a-SM-GQ1CV
50-59 years, female
566.1
GTEX-1KWVE-0011-R1a-SM-F649B
30-39 years, male
565.8
GTEX-1GTWX-0011-R1a-SM-CE6RL
60-69 years, male
564.0
GTEX-11ZUS-0011-R1a-SM-GI4W7
30-39 years, male
562.1
GTEX-1LKK1-0011-R1b-SM-F2TAF
50-59 years, female
558.6
GTEX-1CAV2-0011-R1a-SM-ARZML
40-49 years, female
555.7
GTEX-12WSM-0011-R1a-SM-5LZW6
60-69 years, male
554.6
GTEX-1EMGI-0011-R1b-SM-9OSWZ
60-69 years, male
553.9
GTEX-13FLW-0011-R1b-SM-5LZX2
50-59 years, male
546.6
GTEX-145MH-0011-R1b-SM-5PNWY
50-59 years, male
543.0
GTEX-1F75W-0011-R1a-SM-ARU81
60-69 years, male
540.8
GTEX-1PIIG-0011-R1a-SM-F649P
30-39 years, male
540.4
GTEX-1IKK5-0011-R1b-SM-CE6SQ
60-69 years, male
539.4
GTEX-1I1GS-0011-R1a-SM-CJI43
60-69 years, male
539.1
GTEX-1OJC4-0011-R1a-SM-F2TAZ
50-59 years, female
531.3
GTEX-13O3O-0011-R1b-SM-5KM2K
60-69 years, female
528.2
GTEX-13112-0011-R1b-SM-5HL7K
50-59 years, male
524.6
GTEX-1B933-0011-R1b-SM-9QEGW
50-59 years, female
524.2
GTEX-1JMPZ-0011-R1b-SM-F6497
30-39 years, male
521.9
GTEX-131YS-0011-R1a-SM-5DUXC
60-69 years, female
505.1
GTEX-1C6VR-0011-R1a-SM-7MXUE
60-69 years, male
500.9
GTEX-YFC4-0011-R1a-SM-4V6EH
40-49 years, female
491.5
GTEX-1EH9U-0011-R1b-SM-CJI2B
60-69 years, male
489.0
GTEX-1R9K4-0011-R1a-SM-F342F
60-69 years, male
487.6
GTEX-1F75A-0011-R1b-SM-CE6RA
50-59 years, male
487.2
GTEX-N7MS-0011-R1a-SM-2HMJG
60-69 years, male
485.9
GTEX-1R9PO-0011-R1b-SM-F2I2G
60-69 years, female
485.3
GTEX-1N2EF-0011-R1a-SM-F2TAT
60-69 years, male
483.2
GTEX-S7SE-0011-R1A-SM-2XCDE
50-59 years, male
482.3
GTEX-1HSMO-0011-R1a-SM-CM2SV
60-69 years, male
479.1
GTEX-ZVZQ-0011-R1a-SM-57WBU
60-69 years, female
475.7
GTEX-13OW6-0011-R1a-SM-5L3HQ
50-59 years, male
474.6
GTEX-13JUV-0011-R1a-SM-5LZY4
40-49 years, female
473.1
GTEX-139T8-0011-R1a-SM-5HL75
60-69 years, male
471.1
GTEX-1KANB-0011-R1a-SM-F3K5M
50-59 years, male
468.1
GTEX-11ONC-0011-R1a-SM-57WD4
60-69 years, male
464.9
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y
40-49 years, male
459.4
GTEX-13CF2-0011-R1a-SM-5LZY1
60-69 years, male
458.7
GTEX-1F48J-0011-R1a-SM-9QEIC
50-59 years, female
455.2
GTEX-1RDX4-0011-R1a-SM-F3K5H
50-59 years, female
451.1
GTEX-17F97-0011-R1b-SM-7IGM9
50-59 years, male
448.5
GTEX-YJ89-0011-R1a-SM-4RGLS
60-69 years, male
445.0
GTEX-1LVAO-0011-R1a-SM-F649O
60-69 years, male
444.9
GTEX-14JIY-0011-R1a-SM-68713
60-69 years, male
443.2
GTEX-1H3NZ-0011-R1a-SM-CKZP5
60-69 years, male
441.5
GTEX-145LU-0011-R1a-SM-5Q5CE
50-59 years, male
439.0
GTEX-17HHY-0011-R1a-SM-7189V
50-59 years, male
437.3
GTEX-14BIM-0011-R1a-SM-69LQI
60-69 years, female
435.2
GTEX-117XS-0011-R1b-SM-GJ3PQ
60-69 years, male
433.4
GTEX-1LVA9-0011-R1b-SM-F2TB5
50-59 years, male
433.2
GTEX-1GN1U-0011-R1a-SM-CJI25
50-59 years, female
430.8
GTEX-17HG3-0011-R1a-SM-7LG6H
30-39 years, female
429.9
GTEX-RU72-0011-R1A-SM-HAUZG
50-59 years, female
428.1
GTEX-1N5O9-0011-R1b-SM-F3K4W
60-69 years, male
425.8
GTEX-11GS4-0011-R1a-SM-DO129
60-69 years, male
425.7
GTEX-13RTL-0011-R1a-SM-5PNZ8
40-49 years, male
422.4
GTEX-13N1W-0011-R1b-SM-5MR4T
70-79 years, male
421.3
GTEX-1POEN-0011-R1b-SM-F3K3K
30-39 years, female
417.2
GTEX-13FHP-0011-R1b-SM-5K7XL
50-59 years, male
416.7
GTEX-1H1ZS-0011-R1b-SM-A9G1E
70-79 years, male
414.4
GTEX-1AX9I-0011-R1b-SM-7RHG2
60-69 years, male
413.1
GTEX-1H1CY-0011-R1a-SM-CKZOZ
60-69 years, female
412.7
GTEX-17JCI-0011-R1b-SM-718A3
60-69 years, female
407.9
GTEX-1HGF4-0011-R1a-SM-CJI3S
60-69 years, male
407.2
GTEX-Y8DK-0011-R1A-SM-4RGLO
60-69 years, male
406.4
GTEX-WHSE-0011-R1A-SM-3P5ZK
20-29 years, male
405.4
GTEX-14E6D-0011-R1b-SM-5YYAW
50-59 years, male
399.9
GTEX-OHPN-0011-R1A-SM-2I5GB
60-69 years, female
398.9
GTEX-15DCD-0011-R1b-SM-6LPIJ
70-79 years, female
395.8
GTEX-ZZPT-0011-R1b-SM-GNINL
50-59 years, male
394.6
GTEX-11DXY-0011-R1b-SM-GI4VQ
60-69 years, male
393.9
GTEX-13NYS-0011-R1b-SM-5MR55
60-69 years, male
383.4
GTEX-1IY9M-0011-R1a-SM-EXURZ
60-69 years, male
378.1
GTEX-1EKGG-0011-R1b-SM-9QEI1
60-69 years, male
372.9
GTEX-WWYW-0011-R1A-SM-3TW8G
50-59 years, female
372.2
GTEX-13PVQ-0011-R1b-SM-GJ3RQ
50-59 years, male
367.0
GTEX-1GF9W-0011-R1a-SM-9QEIQ
60-69 years, male
364.1
GTEX-13OW8-0011-R1a-SM-5L3HI
60-69 years, male
362.6
GTEX-1A32A-0011-R1a-SM-7P8SQ
50-59 years, female
361.8
GTEX-1ICLZ-0011-R1b-SM-A9SM3
60-69 years, male
357.4
GTEX-14ASI-0011-R1b-SM-5S2TY
60-69 years, male
357.3
GTEX-1GN2E-0011-R1b-SM-CE6RJ
60-69 years, male
357.0
GTEX-1PWST-0011-R1b-SM-F2I38
70-79 years, male
353.6
GTEX-1IDJH-0011-R1b-SM-ARU6U
70-79 years, male
352.4
GTEX-1HSKV-0011-R1b-SM-CMKH7
60-69 years, male
352.3
GTEX-1B8L1-0011-R1a-SM-7P8SS
60-69 years, male
350.1
GTEX-11WQC-0011-R1b-SM-DO932
60-69 years, male
350.0
GTEX-12WSF-0011-R1a-SM-5DUVI
70-79 years, male
349.1
GTEX-1NV8Z-0011-R1b-SM-F647K
60-69 years, male
346.5
GTEX-11EI6-0011-R1a-SM-DO93L
60-69 years, male
345.5
GTEX-1QP6S-0011-R1b-SM-F3K59
40-49 years, male
345.4
GTEX-1RNSC-0011-R1b-SM-F342D
60-69 years, male
345.1
GTEX-13G51-0011-R1a-SM-5LZYR
60-69 years, male
339.1
GTEX-15ER7-0011-R1b-SM-7KUE1
20-29 years, female
339.0
GTEX-14PQA-0011-R1b-SM-6EU1G
50-59 years, female
337.0
GTEX-1JMQK-0011-R1a-SM-F6484
60-69 years, male
335.7
GTEX-15SHU-0011-R1b-SM-H6Q7U
40-49 years, female
333.7
GTEX-13N2G-0011-R1b-SM-5MR3G
60-69 years, male
330.3
GTEX-1LSNL-0011-R1a-SM-F3K51
50-59 years, male
326.7
GTEX-15CHQ-0011-R1a-SM-COH27
60-69 years, male
324.8
GTEX-ZDXO-0011-R1a-SM-4WKF4
60-69 years, male
320.9
GTEX-17HII-0011-R1b-SM-7MGVW
50-59 years, male
320.5
GTEX-14JFF-0011-R1b-SM-G8W88
60-69 years, male
317.3
GTEX-1JMQJ-0011-R1b-SM-F2T9P
50-59 years, male
316.7
GTEX-12WSA-0011-R1b-SM-GI4VI
60-69 years, male
316.0
GTEX-1QMI2-0011-R1b-SM-F3K5Q
60-69 years, male
316.0
GTEX-16XZZ-0011-R1a-SM-7LTAH
60-69 years, male
307.1
GTEX-14PJO-0011-R1b-SM-6AJAK
60-69 years, male
306.6
GTEX-1JMOU-0011-R1b-SM-F341B
60-69 years, female
305.2
GTEX-1GZHY-0011-R1a-SM-CE6RR
50-59 years, female
301.4
GTEX-ZUA1-0011-R1a-SM-4YCE2
40-49 years, male
301.4
GTEX-1I1GQ-0011-R1a-SM-CY8GG
50-59 years, male
300.9
GTEX-1192X-0011-R1b-SM-GI4VU
50-59 years, male
299.0
GTEX-1LH75-0011-R1a-SM-F341Y
50-59 years, female
298.0
GTEX-ZYFD-0011-R1b-SM-GRR1T
50-59 years, male
297.3
GTEX-1H4P4-0011-R1b-SM-CL54V
50-59 years, male
293.8
GTEX-ZYY3-0011-R1b-SM-GPI92
60-69 years, female
293.8
GTEX-1313W-0011-R1b-SM-5EQ4A
50-59 years, female
292.1
GTEX-1HBPI-0011-R1b-SM-A9SKF
50-59 years, male
288.0
GTEX-13NZ8-0011-R1b-SM-5KM3V
60-69 years, female
285.7
GTEX-X4XX-0011-R1B-SM-3P622
60-69 years, male
285.6
GTEX-14PJM-0011-R1a-SM-CNPO3
50-59 years, female
285.3
GTEX-17EVP-0011-R1a-SM-7DHLA
40-49 years, male
285.0
GTEX-14BMV-0011-R1b-SM-G9ERL
50-59 years, male
283.7
GTEX-1F6IF-0011-R1b-SM-9WG78
60-69 years, male
282.5
GTEX-1JMLX-0011-R1b-SM-G9ERV
50-59 years, male
281.5
GTEX-13FHO-0011-R1b-SM-5KLZG
60-69 years, male
280.2
GTEX-14C5O-0011-R1b-SM-6AJBW
60-69 years, male
280.0
GTEX-14E6C-0011-R1a-SM-G8W86
40-49 years, male
278.1
GTEX-16GPK-0011-R1b-SM-7EWDH
60-69 years, male
275.6
GTEX-1RQED-0011-R1a-SM-F3K5W
60-69 years, male
274.8
GTEX-1C6VQ-0011-R1a-SM-7P8Q2
50-59 years, male
271.7
GTEX-132Q8-0011-R1a-SM-5EGLK
60-69 years, male
268.1
GTEX-Q2AG-0011-R1A-SM-2HMJI
40-49 years, female
264.9
GTEX-13OW5-0011-R1b-SM-5L3GE
60-69 years, male
261.0
GTEX-13SLX-0011-R1a-SM-H6Q8N
50-59 years, female
258.9
GTEX-N7MT-0011-R1a-SM-CNPO1
60-69 years, female
253.3
GTEX-14DAQ-0011-R1a-SM-G8W85
60-69 years, female
251.1
GTEX-145LS-0011-R1b-SM-5PNUP
60-69 years, female
251.0
GTEX-13OVL-0011-R1a-SM-5L3H5
50-59 years, male
250.7
GTEX-13X6I-0011-R1b-SM-5PNZC
60-69 years, male
248.9
GTEX-13QJC-0011-R1b-SM-5S2UU
60-69 years, female
247.3
GTEX-1H3O1-0011-R1b-SM-CL554
60-69 years, male
246.4
GTEX-1H1DG-0011-R1b-SM-CKZP1
70-79 years, male
241.3
GTEX-P44H-0011-R1A-SM-3NM8J
40-49 years, male
241.3
GTEX-11GSP-0011-R1a-SM-9QEJ3
60-69 years, female
239.3
GTEX-1E2YA-0011-R1b-SM-CJI29
50-59 years, male
237.9
GTEX-11NV4-0011-R1a-SM-GINAK
60-69 years, male
236.0
GTEX-13S7M-0011-R1b-SM-5PNZE
60-69 years, female
232.7
GTEX-11PRG-0011-R1b-SM-H7OHD
50-59 years, male
231.9
GTEX-15RJE-0011-R1b-SM-H6Q7N
40-49 years, male
225.8
GTEX-12ZZX-0011-R1a-SM-5EQ6B
40-49 years, female
224.2
GTEX-13OVJ-0011-R1b-SM-5L3I6
50-59 years, female
224.0
GTEX-14LZ3-0011-R1a-SM-69LP5
60-69 years, female
223.3
GTEX-1N2EE-0011-R1a-SM-F3K5K
60-69 years, male
222.9
GTEX-1JN6P-0011-R1b-SM-G8LL3
60-69 years, male
222.3
GTEX-13PLJ-0011-R1a-SM-GJ3QF
60-69 years, female
221.2
GTEX-11H98-0011-R1a-SM-GIN8O
50-59 years, male
219.7
GTEX-12ZZZ-0011-R1a-SM-GIN8I
60-69 years, male
218.9
GTEX-WZTO-0011-R1B-SM-3NMAR
40-49 years, male
218.0
GTEX-12ZZY-0011-R1a-SM-GIN9E
60-69 years, male
217.0
GTEX-13SLW-0011-R1a-SM-5S2W7
70-79 years, male
213.1
GTEX-144GO-0011-R1a-SM-5PNWO
60-69 years, male
212.5
GTEX-ZAB4-0011-R1a-SM-4RGNO
40-49 years, male
208.6
GTEX-ZAK1-0011-R1a-SM-GRR1R
50-59 years, female
207.9
GTEX-17MF6-0011-R1a-SM-72D6O
40-49 years, male
203.8
GTEX-183WM-0011-R1a-SM-718A8
70-79 years, female
200.0
GTEX-1I1GV-0011-R1a-SM-CL559
60-69 years, male
199.4
GTEX-NPJ7-0011-R1a-SM-3GACT
60-69 years, female
196.8
GTEX-11TUW-0011-R1a-SM-DO92S
60-69 years, male
195.7
GTEX-17EVQ-0011-R1a-SM-7189S
70-79 years, male
195.3
GTEX-13JVG-0011-R1a-SM-5KM32
60-69 years, male
189.2
GTEX-1LB8K-0011-R1b-SM-EZ6MV
50-59 years, male
182.3
GTEX-11GSO-0011-R1b-SM-57WD3
60-69 years, male
177.6
GTEX-11ZTS-0011-R1a-SM-5BC71
60-69 years, female
177.6
GTEX-13NZA-0011-R1b-SM-5LUAF
60-69 years, male
172.6
GTEX-1JMQL-0011-R1a-SM-F3K4U
50-59 years, female
172.3
GTEX-11UD1-0011-R1b-SM-5BC7D
40-49 years, female
165.5
GTEX-1BAJH-0011-R1a-SM-7P8SV
70-79 years, male
160.8
GTEX-14E7W-0011-R1b-SM-5YYAT
70-79 years, male
154.6
GTEX-11ZVC-0011-R1b-SM-5BC6M
50-59 years, female
142.5
GTEX-13VXU-0011-R1a-SM-GINAT
50-59 years, male
140.2
GTEX-13RTJ-0011-R1a-SM-5O9D9
60-69 years, male
139.3
GTEX-14ABY-0011-R1a-SM-6EU2W
50-59 years, male
139.3
GTEX-15UF6-0011-R1a-SM-9QEGH
70-79 years, female
131.1
GTEX-13QIC-0011-R1a-SM-5O9CJ
60-69 years, female
129.6
GTEX-12696-0011-R1a-SM-GHWPW
60-69 years, male
128.6
GTEX-T6MN-0011-R1A-SM-32QOY
50-59 years, male
123.3
GTEX-XMD1-0011-R1A-SM-4AT4C
60-69 years, male
111.7
GTEX-1212Z-0011-R1b-SM-5BC72
60-69 years, male
95.6
GTEX-QVUS-0011-R1A-SM-3GAD2
60-69 years, female
92.1
GTEX-11TTK-0011-R1b-SM-GIN92
60-69 years, female
86.2
GTEX-1H23P-0011-R1a-SM-ACKVC
60-69 years, male
83.4
GTEX-1CB4J-0011-R1a-SM-9WG64
60-69 years, male
74.4
GTEX-UTHO-0011-R1A-SM-3GIJO
60-69 years, male
60.8
GTEX-18A6Q-0011-R1b-SM-731DI
60-69 years, male
37.6
GTEX-NPJ8-0011-R1a-SM-33HCB
40-49 years, male
25.0
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
849.7
Pig sample
Sample description
nTPM
Subiculum nTPM: 812.4
Samples: 4
Max nTPM: 1247.9
Min nTPM: 568.8
Sample A
Female
1247.9
Sample B
Female
712.3
Sample C
Male
720.6
Sample D
Male
568.8
Dorsal hippocampus nTPM: 750.0
Samples: 4
Max nTPM: 950.8
Min nTPM: 491.4
Sample A
Female
950.8
Sample B
Female
711.0
Sample C
Male
846.6
Sample D
Male
491.4
Entorhinal cortex nTPM: 805.5
Samples: 4
Max nTPM: 1038.4
Min nTPM: 606.5
Sample A
Female
764.2
Sample B
Female
813.0
Sample C
Male
1038.4
Sample D
Male
606.5
Ventral hippocampus nTPM: 849.7
Samples: 4
Max nTPM: 1182.8
Min nTPM: 608.8
Sample A
Female
956.9
Sample B
Female
608.8
Sample C
Male
1182.8
Sample D
Male
650.3
HIPPOCAMPAL FORMATION - Mouse RNA-seqi
RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
24.7
Mouse sample
Sample description
nTPM
Entorhinal cortex nTPM: 24.7
Samples: 4
Max nTPM: 34.1
Min nTPM: 17.1
Sample A
Male
29.5
Sample B
Male
34.1
Sample C
Female
18.2
Sample D
Female
17.1
Hippocampal formation nTPM: 19.6
Samples: 4
Max nTPM: 25.8
Min nTPM: 14.6
Sample A
Male
16.6
Sample B
Male
21.4
Sample C
Female
14.6
Sample D
Female
25.8
HIPPOCAMPAL FORMATION - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.