MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:343.5 nTPM
HPA Brain:938.5 nTPM
GTEx:343.5 nTPM
FANTOM5:82.6 Scaled Tags Per Million
Pig:702.9 nTPM
Mouse:8.9 nTPM
Allen mouse:14.3 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 938.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 601.2
2586 Male, age 75, left hemisphere 1102.7
2666 Male, age 74, left hemisphere 803.0
2828 Female, age 72, unknown 681.2
1827 Male, age 72, unknown 608.5
1870 Female, age 42, unknown 541.2
2219 Male, age 76, both hemispheres 532.3
1833 Male, age 53, unknown 514.0
1830 Male, age 51, unknown 452.8
2411 Female, age 72, unknown 418.2
2019 Male, age 18, unknown 358.4
Dorsal raphe nucleus
nTPM: 612.0
2047 Male, age 72, unknown 705.5
2298 Female, age 72, unknown 700.7
1828 Male, age 53, unknown 565.6
2750 Male, age 76, both hemispheres 561.6
2016 Female, age 72, unknown 526.6
Inferior colliculus
nTPM: 647.8
2849 Male, age 72, unknown 751.5
1848 Female, age 42, unknown 640.3
2097 Female, age 72, unknown 638.1
1890 Male, age 53, unknown 561.5
Median raphe nucleus
nTPM: 938.5
2220 Male, age 76, midline 938.5
Periaquaductal grey, anterior
nTPM: 730.8
1795 Male, age 51, unknown 775.1
1947 Male, age 18, unknown 772.1
2502 Female, age 75, unknown 645.2
Periaquaductal grey, dorsal
nTPM: 615.8
1840 Male, age 53, unknown 783.0
2850 Male, age 76, both hemispheres 665.7
1831 Male, age 72, unknown 541.9
2464 Female, age 72, unknown 472.4
Periaquaductal grey, lateral
nTPM: 570.7
2140 Male, age 76, both hemispheres 652.8
2272 Male, age 74, both hemispheres 586.3
2053 Male, age 18, unknown 473.0
Pretectal area
nTPM: 538.9
2224 Female, age 72, unknown 773.0
2825 Male, age 18, unknown 708.3
2007 Male, age 72, unknown 607.8
1816 Male, age 51, unknown 577.2
2667 Female, age 75, unknown 562.3
1817 Female, age 42, unknown 557.0
1944 Female, age 72, unknown 543.1
2273 Male, age 74, both hemispheres 456.7
2316 Male, age 76, right hemisphere 431.4
1815 Male, age 53, unknown 430.1
2407 Male, age 75, both hemispheres 280.8
Red nucleus
nTPM: 426.3
2584 Male, age 75, left hemisphere 734.4
2588 Male, age 74, left hemisphere 491.0
2785 Male, age 18, unknown 474.8
2227 Male, age 72, unknown 472.5
2769 Male, age 72, unknown 466.3
2503 Female, age 72, unknown 436.3
1954 Female, age 42, unknown 396.7
2725 Female, age 75, unknown 365.6
1821 Female, age 72, unknown 356.8
1904 Male, age 53, unknown 328.2
2823 Male, age 76, right hemisphere 312.5
1865 Male, age 51, unknown 280.7
Substantia nigra
nTPM: 507.2
1916 Female, age 42, unknown 678.2
2665 Male, age 74, both hemispheres 627.6
2583 Male, age 75, right hemisphere 617.3
1851 Male, age 51, unknown 530.5
1941 Male, age 53, unknown 526.4
2699 Male, age 18, unknown 519.1
1889 Female, age 72, unknown 513.8
2590 Female, age 75, unknown 401.5
2241 Male, age 72, unknown 398.1
2409 Female, age 72, unknown 259.3
Superior colliculus
nTPM: 492.0
2668 Female, age 75, unknown 686.0
1796 Male, age 53, unknown 668.7
1839 Male, age 51, unknown 589.3
2087 Female, age 72, unknown 529.3
2261 Male, age 18, unknown 516.5
2664 Male, age 75, both hemispheres 489.3
2587 Male, age 74, left hemisphere 421.7
1895 Male, age 76, right hemisphere 408.0
1913 Female, age 42, unknown 310.4
1995 Male, age 72, unknown 300.2
Ventral tegmental area
nTPM: 618.1
2218 Male, age 76, both hemispheres 728.4
1942 Male, age 51, unknown 709.5
1915 Female, age 42, unknown 691.0
2021 Male, age 53, unknown 645.4
2223 Female, age 72, unknown 543.9
2410 Female, age 72, unknown 390.4

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 343.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 343.5
Samples: 183

Max nTPM: 1256.5
Min nTPM: 29.7
Std nTPM: 191.6
Median nTPM: 323.3
GTEX-1KD4Q-0011-R2a-SM-F649I 40-49 years, male 1256.5
GTEX-WL46-0011-R2A-SM-3LK6O 50-59 years, male 1064.8
GTEX-1HBPH-0011-R2a-SM-GQ1DS 40-49 years, female 948.7
GTEX-T6MN-0011-R2A-SM-32QOW 50-59 years, male 812.4
GTEX-1E1VI-0011-R2a-SM-9QEGS 50-59 years, male 781.4
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 773.1
GTEX-1PIIG-0011-R2b-SM-F648W 30-39 years, male 727.8
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 690.4
GTEX-1MJK2-0011-R2b-SM-EXUS5 50-59 years, male 683.5
GTEX-17EVP-0011-R2a-SM-7LG4W 40-49 years, male 671.0
GTEX-1QMI2-0011-R2b-SM-F648R 60-69 years, male 662.9
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 82.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 82.6
FF:10158-103A5 76 years, female 82.6

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 702.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 564.7
Samples: 4

Max nTPM: 1003.4
Min nTPM: 265.4
Sample A Female 1003.4
Sample B Female 488.3
Sample C Male 501.7
Sample D Male 265.4
Midbrain
nTPM: 682.6
Samples: 4

Max nTPM: 1002.5
Min nTPM: 396.1
Sample A Female 396.1
Sample B Female 558.7
Sample C Male 773.1
Sample D Male 1002.5
Periaqueductal gray
nTPM: 596.6
Samples: 3

Max nTPM: 710.8
Min nTPM: 536.4
Sample B Female 542.6
Sample C Male 710.8
Sample D Male 536.4
Superior colliculi
nTPM: 702.9
Samples: 4

Max nTPM: 1101.6
Min nTPM: 432.1
Sample A Female 1101.6
Sample B Female 432.1
Sample C Male 595.1
Sample D Male 682.8

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 8.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 8.9
Samples: 4

Max nTPM: 15.1
Min nTPM: 5.7
Sample A Male 15.1
Sample B Male 7.8
Sample C Female 5.7
Sample D Female 6.9

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 14.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 14.3
79360249 Antisense, RP_071018_01_E06, Mouse strain C57BL/6J (56 days, male) 21.0
777 Antisense, RP_040315_01_19, Mouse strain C57BL/6J (56 days, male) 7.7
778 Antisense, RP_040315_01_19, Mouse strain C57BL/6J (56 days, male) 6.4

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