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A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
188.4
Sample id
Sample description
nTPM
Amygdala nTPM: 167.5
1987
Female, age 91, left hemisphere
204.7
2517
Female, age 94, left hemisphere
178.4
2514
Male, age 75, right hemisphere
164.3
2814
Male, age 76, right hemisphere
163.5
2695
Female, age 67, right hemisphere
126.7
Basal amygdala nTPM: 179.9
2243
Female, age 91, right hemisphere
223.7
2685
Female, age 94, left hemisphere
221.4
2110
Male, age 80, left hemisphere
189.0
1955
Male, age 76, both hemispheres
165.8
2609
Male, age 75, right hemisphere
164.6
2827
Female, age 67, right hemisphere
114.7
Central amygdala nTPM: 184.1
2239
Male, age 80, left hemisphere
216.1
2701
Female, age 91, right hemisphere
203.6
2826
Female, age 94, left hemisphere
182.4
2515
Male, age 75, right hemisphere
168.9
1905
Male, age 76, both hemispheres
149.3
Corticomedial amygdala nTPM: 188.4
2242
Female, age 91, right hemisphere
237.1
2829
Male, age 80, left hemisphere
235.0
2429
Female, age 94, left hemisphere
198.7
2240
Male, age 76, both hemispheres
165.2
2428
Male, age 75, right hemisphere
156.7
2535
Female, age 67, right hemisphere
137.6
Lateral amygdala nTPM: 169.2
2534
Female, age 94, left hemisphere
216.6
2255
Female, age 91, right hemisphere
210.7
1883
Male, age 76, both hemispheres
166.9
2256
Male, age 80, left hemisphere
164.1
2516
Male, age 75, right hemisphere
156.1
2830
Female, age 67, right hemisphere
100.8
AMYGDALA - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
98.5
GTEx sample id
Sample description
nTPM
Brain - Amygdala Average nTPM: 98.5
Samples: 181
Max nTPM: 186.6
Min nTPM: 48.1
Std nTPM: 27.1
Median nTPM: 94.7
GTEX-1HCU6-0011-R4b-SM-ARU74
60-69 years, female
186.6
GTEX-14BMV-0011-R4a-SM-H6Q7P
50-59 years, male
173.2
GTEX-Q2AG-0011-R4A-SM-2HMKA
40-49 years, female
171.9
GTEX-1AX9I-0011-R4b-SM-7EPIB
60-69 years, male
162.6
GTEX-1HFI6-0011-R4b-SM-A96RT
40-49 years, male
159.0
GTEX-1RQEC-0011-R4b-SM-F342C
60-69 years, male
158.0
GTEX-TSE9-0011-R4A-SM-3DB7H
60-69 years, female
157.3
GTEX-1B8L1-0011-R4a-SM-7EWFJ
60-69 years, male
153.0
GTEX-1N2EF-0011-R4a-SM-F341F
60-69 years, male
148.1
GTEX-13N1W-0011-R4a-SM-5MR52
70-79 years, male
147.4
GTEX-131XH-0011-R4b-SM-5DUWB
50-59 years, male
147.3
GTEX-WZTO-0011-R4A-SM-3NMC7
40-49 years, male
145.9
GTEX-145LS-0011-R4b-SM-5S2UT
60-69 years, female
144.6
GTEX-1F48J-0011-R4b-SM-9OSVX
50-59 years, female
144.3
GTEX-1LVAO-0011-R4a-SM-EXURO
60-69 years, male
144.3
GTEX-13O3O-0011-R4b-SM-5KM3F
60-69 years, female
142.5
GTEX-1JMLX-0011-R4a-SM-EY5YJ
50-59 years, male
137.1
GTEX-1E1VI-0011-R4b-SM-9QEHV
50-59 years, male
136.4
GTEX-17EVP-0011-R4a-SM-79OML
40-49 years, male
135.4
GTEX-15SHU-0011-R4b-SM-7IGLC
40-49 years, female
134.2
GTEX-14ASI-0011-R4a-SM-69LQ4
60-69 years, male
132.2
GTEX-117XS-0011-R4b-SM-GJ3PR
60-69 years, male
131.6
GTEX-1A3MX-0011-R4b-SM-7EWFK
60-69 years, male
130.4
GTEX-1JMOU-0011-R4b-SM-EY5ZL
60-69 years, female
130.3
GTEX-1H3NZ-0011-R4a-SM-CL54T
60-69 years, male
127.6
GTEX-1HBPH-0011-R4a-SM-A96RX
40-49 years, female
127.1
GTEX-13O3Q-0011-R4a-SM-5P9H2
50-59 years, male
126.2
GTEX-ZAB4-0011-R4a-SM-4SOKB
40-49 years, male
126.0
GTEX-NPJ7-0011-R4a-SM-2I3GJ
60-69 years, female
125.5
GTEX-1JMQJ-0011-R4b-SM-EXUT8
50-59 years, male
125.2
GTEX-XLM4-0011-R4B-SM-4AT5C
60-69 years, male
124.9
GTEX-1LSVX-0011-R4b-SM-EXURP
60-69 years, male
124.6
GTEX-1P4AB-0011-R4b-SM-F2T9S
50-59 years, male
123.3
GTEX-13VXU-0011-R4b-SM-5O9CI
50-59 years, male
122.9
GTEX-1GN73-0011-R4b-SM-9QEIK
60-69 years, male
122.6
GTEX-14BIM-0011-R4b-SM-5S2RK
60-69 years, female
121.5
GTEX-1JJ6O-0011-R4a-SM-EY5YM
60-69 years, male
121.0
GTEX-1IY9M-0011-R4a-SM-C1YQ2
60-69 years, male
120.1
GTEX-13X6K-0011-R4b-SM-5P9HO
60-69 years, female
120.0
GTEX-S7SE-0011-R4A-SM-2XCDB
50-59 years, male
118.5
GTEX-14C5O-0011-R4b-SM-G9ERF
60-69 years, male
117.8
GTEX-11DYG-0011-R4b-SM-GJ3RG
60-69 years, male
117.5
GTEX-12WSD-0011-R4b-SM-5LZUA
60-69 years, female
117.3
GTEX-1313W-0011-R4b-SM-5KLZV
50-59 years, female
116.0
GTEX-1PIIG-0011-R4a-SM-F2TAQ
30-39 years, male
115.2
GTEX-1PWST-0011-R4a-SM-F2T9X
70-79 years, male
114.8
GTEX-1F6IF-0011-R4b-SM-CKZNJ
60-69 years, male
114.5
GTEX-11DXY-0011-R4b-SM-GI4VR
60-69 years, male
114.1
GTEX-1EMGI-0011-R4b-SM-CJI2D
60-69 years, male
113.9
GTEX-111FC-0011-R4a-SM-GIN8K
60-69 years, male
113.8
GTEX-12ZZY-0011-R4a-SM-GIN9F
60-69 years, male
113.7
GTEX-1F75A-0011-R4a-SM-ARL8J
50-59 years, male
113.5
GTEX-1GTWX-0011-R4a-SM-C1YQI
60-69 years, male
113.3
GTEX-14JIY-0011-R4b-SM-5ZZV7
60-69 years, male
111.7
GTEX-11GS4-0011-R4a-SM-GJ3RJ
60-69 years, male
109.8
GTEX-13X6J-0011-R4b-SM-5P9K4
50-59 years, male
108.0
GTEX-1F7RK-0011-R4b-SM-9QEI7
20-29 years, female
107.6
GTEX-1O9I2-0011-R4b-SM-F3K4K
50-59 years, male
106.4
GTEX-147F4-0011-R4b-SM-GJ3R4
50-59 years, male
106.3
GTEX-1B996-0011-R4b-SM-9OSVO
60-69 years, male
105.7
GTEX-15ER7-0011-R4a-SM-6M46S
20-29 years, female
105.6
GTEX-13SLX-0011-R4a-SM-5O9BJ
50-59 years, female
105.1
GTEX-15DYW-0011-R4a-SM-6M46V
60-69 years, female
105.1
GTEX-1CB4G-0011-R4b-SM-CJI28
60-69 years, male
105.1
GTEX-1C6WA-0011-R4a-SM-9QEH2
60-69 years, male
104.8
GTEX-131YS-0011-R4a-SM-5DUVL
60-69 years, female
104.7
GTEX-1HBPI-0011-R4a-SM-CJI3K
50-59 years, male
104.4
GTEX-1GMR8-0011-R4a-SM-9OSX1
50-59 years, female
104.1
GTEX-ZVZQ-0011-R4b-SM-57WCZ
60-69 years, female
103.9
GTEX-13FHO-0011-R4b-SM-H6611
60-69 years, male
103.7
GTEX-12WSC-0011-R4a-SM-H6Q8M
50-59 years, male
103.6
GTEX-1H1ZS-0011-R4b-SM-CKZO7
70-79 years, male
103.0
GTEX-YFC4-0011-R4a-SM-4RGLQ
40-49 years, female
101.6
GTEX-11ONC-0011-R4b-SM-DO93H
60-69 years, male
101.0
GTEX-13NYB-0011-R4b-SM-9QEGJ
40-49 years, male
100.4
GTEX-14ABY-0011-R4b-SM-5S2VN
50-59 years, male
100.0
GTEX-14PJM-0011-R4a-SM-5YYAS
50-59 years, female
98.4
GTEX-1LKK1-0011-R4b-SM-EY5YA
50-59 years, female
97.8
GTEX-1OJC4-0011-R4a-SM-F3K54
50-59 years, female
97.8
GTEX-13RTJ-0011-R4b-SM-5PNX1
60-69 years, male
97.7
GTEX-1NV8Z-0011-R4b-SM-G8LMZ
60-69 years, male
97.3
GTEX-15EO6-0011-R4a-SM-7KUKZ
50-59 years, male
97.2
GTEX-14PQA-0011-R4b-SM-6AJBU
50-59 years, female
96.3
GTEX-1ICLZ-0011-R4a-SM-CMKHL
60-69 years, male
95.7
GTEX-13X6I-0011-R4b-SM-5PNU9
60-69 years, male
95.6
GTEX-1N2EE-0011-R4a-SM-EXOII
60-69 years, male
95.5
GTEX-QVJO-0011-R4A-SM-2S1QL
60-69 years, female
95.2
GTEX-WVLH-0011-R4A-SM-3MJFS
50-59 years, male
95.0
GTEX-15DCD-0011-R4a-SM-69LPB
70-79 years, female
94.9
GTEX-13NYS-0011-R4b-SM-5MR3O
60-69 years, male
94.8
GTEX-11NUK-0011-R4a-SM-DO12B
50-59 years, male
94.7
GTEX-11PRG-0011-R4a-SM-DNZZR
50-59 years, male
94.5
GTEX-1I1GR-0011-R4a-SM-CMKHC
60-69 years, male
94.5
GTEX-17HG3-0011-R4a-SM-7IGLL
30-39 years, female
94.3
GTEX-1LH75-0011-R4a-SM-F2TAM
50-59 years, female
94.1
GTEX-11OF3-0011-R4a-SM-GJ3RB
60-69 years, male
93.0
GTEX-1HB9E-0011-R4b-SM-ARZLS
50-59 years, male
92.2
GTEX-15RJE-0011-R4a-SM-H7OH4
40-49 years, male
91.9
GTEX-1117F-0011-R4b-SM-GI4VM
60-69 years, female
91.3
GTEX-1GF9W-0011-R4a-SM-CE6RH
60-69 years, male
91.0
GTEX-15CHQ-0011-R4a-SM-686ZX
60-69 years, male
90.8
GTEX-N7MT-0011-R4a-SM-2I3G9
60-69 years, female
90.7
GTEX-145LU-0011-R4b-SM-5P9K1
50-59 years, male
90.3
GTEX-RNOR-0011-R4A-SM-3GAD3
50-59 years, female
90.3
GTEX-1RDX4-0011-R4b-SM-F3K43
50-59 years, female
90.0
GTEX-1RQED-0011-R4b-SM-F2I2X
60-69 years, male
90.0
GTEX-1PPGY-0011-R4a-SM-F3K4F
60-69 years, male
89.9
GTEX-12WSF-0011-R4b-SM-5HL88
70-79 years, male
89.3
GTEX-1H3O1-0011-R4b-SM-A9SKE
60-69 years, male
89.3
GTEX-13OW8-0011-R4a-SM-9WG6V
60-69 years, male
88.7
GTEX-PVOW-0011-R4A-SM-H6Q8O
40-49 years, male
88.3
GTEX-1399T-0011-R4b-SM-5DUVX
60-69 years, male
88.2
GTEX-QVUS-0011-R4A-SM-3GAE7
60-69 years, female
88.0
GTEX-1GZ4I-0011-R4a-SM-9QEI9
50-59 years, male
87.6
GTEX-1J8Q2-0011-R4a-SM-ADEHA
60-69 years, male
87.4
GTEX-13OW6-0011-R4a-SM-5O9DX
50-59 years, male
87.1
GTEX-13PVQ-0011-R4a-SM-5O9CT
50-59 years, male
86.9
GTEX-13JVG-0011-R4a-SM-5MR4C
60-69 years, male
86.6
GTEX-13QIC-0011-R4a-SM-5PNX8
60-69 years, female
86.3
GTEX-11NV4-0011-R4a-SM-GI4XC
60-69 years, male
86.0
GTEX-13OW5-0011-R4b-SM-5L3HS
60-69 years, male
85.9
GTEX-14JG1-0011-R4b-SM-62LEB
40-49 years, male
85.8
GTEX-1LVA9-0011-R4a-SM-F2TA2
50-59 years, male
85.7
GTEX-13FLV-0011-R4a-SM-5LZYU
50-59 years, male
85.6
GTEX-1J1OQ-0011-R4a-SM-D4P2A
40-49 years, female
85.1
GTEX-WHSE-0011-R4A-SM-3P5ZN
20-29 years, male
84.7
GTEX-13N2G-0011-R4b-SM-5MR54
60-69 years, male
83.9
GTEX-1EX96-0011-R4a-SM-ARU82
50-59 years, male
83.6
GTEX-1JMQK-0011-R4a-SM-G8LLQ
60-69 years, male
83.3
GTEX-13OW7-0011-R4b-SM-5O9CX
50-59 years, male
83.0
GTEX-14DAQ-0011-R4a-SM-5YYAI
60-69 years, female
82.8
GTEX-17EVQ-0011-R4b-SM-7LT94
70-79 years, male
82.7
GTEX-1KWVE-0011-R4a-SM-F3K5X
30-39 years, male
81.7
GTEX-13OVH-0011-R4a-SM-5KM3W
70-79 years, male
81.6
GTEX-X4XX-0011-R4B-SM-46MWL
60-69 years, male
80.8
GTEX-11GSO-0011-R4b-SM-GJ3R8
60-69 years, male
80.1
GTEX-14E7W-0011-R4b-SM-62LEA
70-79 years, male
80.0
GTEX-1C6VR-0011-R4b-SM-9QEGZ
60-69 years, male
79.9
GTEX-16YQH-0011-R4a-SM-7EPGI
30-39 years, male
79.4
GTEX-13CZV-0011-R4b-SM-5J2NY
60-69 years, male
79.2
GTEX-ZAK1-0011-R4a-SM-6AJBK
50-59 years, female
79.1
GTEX-NPJ8-0011-R4a-SM-2HML3
40-49 years, male
78.1
GTEX-13OVL-0011-R4b-SM-5L3HV
50-59 years, male
76.3
GTEX-X585-0011-R4B-SM-46MVH
50-59 years, male
76.2
GTEX-1QP6S-0011-R4b-SM-F33ZY
40-49 years, male
75.0
GTEX-14PN4-0011-R4a-SM-686ZT
50-59 years, male
74.6
GTEX-1N2DW-0011-R4b-SM-EZ6MD
50-59 years, male
74.0
GTEX-13OVJ-0011-R4b-SM-5P9H5
50-59 years, female
73.8
GTEX-1MJK2-0011-R4a-SM-F3426
50-59 years, male
73.1
GTEX-13112-0011-R4b-SM-5DUXL
50-59 years, male
71.9
GTEX-1445S-0011-R4a-SM-5PNWN
60-69 years, male
70.9
GTEX-144GL-0011-R4a-SM-5PNUI
50-59 years, male
70.8
GTEX-1H1DG-0011-R4a-SM-CE6RQ
70-79 years, male
70.6
GTEX-139T8-0011-R4a-SM-5HL54
60-69 years, male
70.0
GTEX-1POEN-0011-R4b-SM-F3K4O
30-39 years, female
69.3
GTEX-ZZPT-0011-R4a-SM-GPRX4
50-59 years, male
69.3
GTEX-11TTK-0011-R4a-SM-DNZZU
60-69 years, female
69.1
GTEX-1QMI2-0011-R4b-SM-F3K4R
60-69 years, male
68.3
GTEX-1H1CY-0011-R4b-SM-CJI3G
60-69 years, female
67.0
GTEX-12ZZW-0011-R4a-SM-5DUX9
50-59 years, male
66.5
GTEX-NL4W-0011-R4a-SM-2I5GZ
50-59 years, male
66.3
GTEX-1LB8K-0011-R4b-SM-F6487
50-59 years, male
66.2
GTEX-1RLM8-0011-R4a-SM-F2TBL
50-59 years, male
64.6
GTEX-17F97-0011-R4b-SM-7KFS2
50-59 years, male
63.7
GTEX-1J8EW-0011-R4b-SM-ARU89
60-69 years, female
63.4
GTEX-1R46S-0011-R4b-SM-F2TBF
60-69 years, female
63.0
GTEX-13QJC-0011-R4a-SM-H65ZP
60-69 years, female
62.7
GTEX-12ZZZ-0011-R4b-SM-5DUV7
60-69 years, male
62.2
GTEX-12WSH-0011-R4a-SM-5GU6K
50-59 years, male
62.0
GTEX-ZYY3-0011-R4a-SM-GQ1CY
60-69 years, female
61.5
GTEX-11ZTS-0011-R4b-SM-GINAQ
60-69 years, female
60.6
GTEX-12WSA-0011-R4a-SM-57WB7
60-69 years, male
60.3
GTEX-13SLW-0011-R4b-SM-5S2W2
70-79 years, male
60.2
GTEX-1JN1M-0011-R4b-SM-F6494
60-69 years, female
59.4
GTEX-1H23P-0011-R4b-SM-CL54R
60-69 years, male
56.7
GTEX-11ZU8-0011-R4a-SM-5BC6Y
60-69 years, male
53.8
GTEX-OHPN-0011-R4A-SM-2I5FD
60-69 years, female
52.3
GTEX-13PLJ-0011-R4b-SM-GJ3R6
60-69 years, female
51.9
GTEX-147GR-0011-R4a-SM-5S2V2
60-69 years, male
50.0
GTEX-14JFF-0011-R4a-SM-5ZZV5
60-69 years, male
49.8
GTEX-11ZVC-0011-R4a-SM-5BC6Z
50-59 years, female
48.1
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AMYGDALA - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
65.5
Pig sample
Sample description
nTPM
Amygdala nTPM: 65.5
Samples: 4
Max nTPM: 87.4
Min nTPM: 46.6
Sample A
Female
87.4
Sample B
Female
46.6
Sample C
Male
60.8
Sample D
Male
67.2
AMYGDALA - Mouse RNA-seqi
RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
89.2
Mouse sample
Sample description
nTPM
Amygdala nTPM: 89.2
Samples: 4
Max nTPM: 109.0
Min nTPM: 71.2
Sample A
Male
109.0
Sample B
Male
86.1
Sample C
Female
71.2
Sample D
Female
90.6
AMYGDALA - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.
The Human Protein Atlas project is funded
