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  • SUMMARY

  • TISSUE

  • BRAIN

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  • USP11
BRAIN HYPOTHALAMUS Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
PRIMARY MOUSE DATA
ANTIBODIES
AND
VALIDATION
Brain proteome
Hypothalamus
Brain methods
HYPOTHALAMUS - Expression summary
Mouse brain, Intensity
Hypothalamusi

Protein expression in mouse brain using immunofluorescence is reported as mean fluorescence intensity.

234.692
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:133.2 nTPM
HPA Brain:349.5 nTPM
GTEx:133.2 nTPM
Pig:98.2 nTPM
Mouse:182.2 nTPM
Allen mouse:21.9 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

HYPOTHALAMUS - Mouse brain profilei

Protein expression in mouse brain using immunofluorescence is reported as fluorescence intensity.

, antibody HPA037536
Hypothalamus mean intensity 234.692
intensityi

Protein expression in mouse brain using immunofluorescence is reported as mean fluorescence intensity.

FRONT BACK
Dorsal tuberomammillary nucleus 72.848
Mammillary nucleus 36.187
Periventricular hypothalamic nucleus 136.872
Supraoptic nucleus 89.759
Tuberal nucleus 60.967
Ventral tuberomammillary nucleus 37.834
Lateral preoptic area 74.419
Medial preoptic area 38.241
Suprachiasmatic nucleus 234.692
Paraventricular hypothalamic nucleus 113.229
Anterior hypothalamic area, central 96.697
Ventral medial hypothalamic nucleus 82.134
Ventral medial hypothalamic nucleus* -
Arcuate nucleus 123.153
Arcuate nucleus* -
Peduncular part of lateral hypothalmus 60.359
Dorsal medial hypothalamic nucleus 86.641
Stria terminalis* -

HYPOTHALAMUS - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

349.5
Sample id Sample description nTPM
Arcuate nucleus
nTPM: 349.5
2226 Male, age 75, left hemisphere 394.0
1961 Female, age 42, unknown 305.0
Dorsomedial nucleus
nTPM: 241.2
2041 Female, age 72, unknown 266.5
2017 Female, age 42, unknown 255.0
1989 Male, age 62, unknown 202.2
Lateral hypothalamic area
nTPM: 279.3
2228 Male, age 66, unknown 361.0
1791 Male, age 80, right hemisphere 285.7
2271 Male, age 75, both hemispheres 276.2
2412 Male, age 62, unknown 194.2
Mammillary body
nTPM: 153.4
1923 Female, age 72, unknown 173.6
1948 Female, age 72, unknown 161.4
2413 Male, age 66, unknown 160.9
1945 Male, age 80, right hemisphere 150.0
1834 Female, age 42, unknown 121.1
Paraventricular nucleus
nTPM: 253.5
2700 Male, age 62, unknown 253.5
Preoptic area
nTPM: 247.1
1907 Male, age 80, right hemisphere 316.4
1861 Female, age 42, unknown 233.3
2414 Female, age 72, unknown 191.7
Supraoptic nucleus
nTPM: 186.8
2835 Female, age 72, unknown 197.2
1894 Female, age 72, unknown 194.4
2043 Male, age 62, unknown 168.7
Ventromedial nucleus
nTPM: 293.3
1982 Female, age 72, unknown 310.3
1822 Female, age 42, unknown 276.3

HYPOTHALAMUS - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

133.2
GTEx sample id Sample description nTPM
Brain - Hypothalamus
Average nTPM: 133.2
Samples: 257

Max nTPM: 235.1
Min nTPM: 46.7
Std nTPM: 42.9
Median nTPM: 132.3
GTEX-1C6WA-0011-R8b-SM-7P8S7 60-69 years, male 235.1
GTEX-13OW7-0011-R8b-SM-5L3HR 50-59 years, male 220.5
GTEX-13NYB-0011-R8a-SM-5KM4R 40-49 years, male 218.7
GTEX-1HB9E-0011-R8b-SM-A9G1O 50-59 years, male 214.7
GTEX-1LVAO-0011-R8a-SM-F3K5J 60-69 years, male 213.2
GTEX-1LH75-0011-R8b-SM-F2TB2 50-59 years, female 212.7
GTEX-1B8L1-0011-R8b-SM-7P8ST 60-69 years, male 208.5
GTEX-1JMLX-0011-R8a-SM-G9EPQ 50-59 years, male 207.9
GTEX-1R9PO-0011-R8a-SM-F2TA3 60-69 years, female 207.9
GTEX-13QIC-0011-R8b-SM-5O9CV 60-69 years, female 205.8
GTEX-13N1W-0011-R8a-SM-5MR56 70-79 years, male 205.0
GTEX-1IKK5-0011-R8b-SM-CJI45 60-69 years, male 203.5
GTEX-1E1VI-0011-R8b-SM-ARU8E 50-59 years, male 198.7
GTEX-1F6IF-0011-R8a-SM-9OSX5 60-69 years, male 198.5
GTEX-13OW6-0011-R8a-SM-5L3GF 50-59 years, male 198.2
GTEX-1C6VR-0011-R8b-SM-7MXUF 60-69 years, male 196.6
GTEX-117XS-0011-R8b-SM-GHWOD 60-69 years, male 195.8
GTEX-17HII-0011-R8a-SM-79OK6 50-59 years, male 195.8
GTEX-14DAQ-0011-R8a-SM-G9ERP 60-69 years, female 195.1
GTEX-1LSNL-0011-R8b-SM-F2TAH 50-59 years, male 195.0
GTEX-13OVH-0011-R8b-SM-5MR35 70-79 years, male 194.2
GTEX-1J8Q2-0011-R8b-SM-D4P2E 60-69 years, male 191.9
GTEX-1MJK2-0011-R8a-SM-F341I 50-59 years, male 191.4
GTEX-1B933-0011-R8a-SM-9QEGX 50-59 years, female 189.3
GTEX-1J1OQ-0011-R8a-SM-ACKVE 40-49 years, female 188.3
GTEX-1GTWX-0011-R8a-SM-CE6RM 60-69 years, male 187.5
GTEX-1F75W-0011-R8a-SM-9QEI4 60-69 years, male 187.3
GTEX-1AX9I-0011-R8a-SM-7P8PJ 60-69 years, male 186.8
GTEX-QVUS-0011-R8A-SM-3GAD7 60-69 years, female 186.7
GTEX-15ER7-0011-R8a-SM-7KUL2 20-29 years, female 186.6
GTEX-14BMV-0011-R8a-SM-G9ERM 50-59 years, male 186.2
GTEX-1I1GQ-0011-R8a-SM-C1YRS 50-59 years, male 185.1
GTEX-X585-0011-R8A-SM-46MUX 50-59 years, male 185.0
GTEX-13X6K-0011-R8b-SM-5PNZ4 60-69 years, female 184.6
GTEX-1HFI6-0011-R8a-SM-ARZLP 40-49 years, male 184.1
GTEX-1I1CD-0011-R8b-SM-CJI3X 60-69 years, female 183.8
GTEX-1KD4Q-0011-R8a-SM-F341N 40-49 years, male 183.6
GTEX-13O3Q-0011-R8b-SM-5KM2J 50-59 years, male 182.8
GTEX-117YW-0011-R8a-SM-GINAB 50-59 years, male 182.5
GTEX-11NV4-0011-R8b-SM-GHWO4 60-69 years, male 182.1
GTEX-WZTO-0011-R8A-SM-4E3II 40-49 years, male 182.0
GTEX-1H3NZ-0011-R8a-SM-CKZP6 60-69 years, male 181.8
GTEX-11GSO-0011-R8b-SM-GJ3PM 60-69 years, male 181.7
GTEX-1GF9V-0011-R8b-SM-CE6RB 60-69 years, male 181.5
GTEX-11OF3-0011-R8b-SM-57WCS 60-69 years, male 180.8
GTEX-1N2DW-0011-R8a-SM-EY5YD 50-59 years, male 180.3
GTEX-14ASI-0011-R8b-SM-5S2UB 60-69 years, male 179.4
GTEX-13NZA-0011-R8b-SM-5KM2Q 60-69 years, male 178.6
GTEX-17HG3-0011-R8a-SM-79OK7 30-39 years, female 177.8
GTEX-1MA7X-0011-R8a-SM-G9EQD 60-69 years, male 177.8
GTEX-1JMQJ-0011-R8a-SM-G8LKT 50-59 years, male 177.7
GTEX-1313W-0011-R8a-SM-5DUVM 50-59 years, female 177.5
GTEX-1A3MX-0011-R8a-SM-7P8PI 60-69 years, male 177.2
GTEX-14PJM-0011-R8b-SM-69LPD 50-59 years, female 177.1
GTEX-1NV8Z-0011-R8b-SM-F3K3J 60-69 years, male 176.4
GTEX-15EO6-0011-R8a-SM-H6Q6R 50-59 years, male 174.1
GTEX-145LU-0011-R8b-SM-5PNZG 50-59 years, male 173.9
GTEX-13CIG-0011-R8b-SM-5LZX5 50-59 years, male 173.5
GTEX-13RTJ-0011-R8b-SM-5O9DL 60-69 years, male 173.2
GTEX-NPJ8-0011-R8a-SM-2HMLG 40-49 years, male 172.9
GTEX-1RQEC-0011-R8b-SM-F648X 60-69 years, male 172.4
GTEX-11O72-0011-R8a-SM-GJ3R9 40-49 years, male 171.7
GTEX-13G51-0011-R8b-SM-5LZZ4 60-69 years, male 171.7
GTEX-1JMOU-0011-R8b-SM-F2TA9 60-69 years, female 169.5
GTEX-131XH-0011-R8a-SM-5EGLL 50-59 years, male 168.7
GTEX-16YQH-0011-R8a-SM-7DUFB 30-39 years, male 168.7
GTEX-1GZ2Q-0011-R8a-SM-CE6RO 40-49 years, male 167.8
GTEX-1LSVX-0011-R8a-SM-F2TB3 60-69 years, male 167.5
GTEX-1LKK1-0011-R8a-SM-F341O 50-59 years, female 167.1
GTEX-1EMGI-0011-R8b-SM-9QEID 60-69 years, male 166.5
GTEX-ZAK1-0011-R8a-SM-H7OGE 50-59 years, female 165.8
GTEX-17EVP-0011-R8b-SM-7DUF9 40-49 years, male 164.9
GTEX-13FLV-0011-R8a-SM-5LZZE 50-59 years, male 164.0
GTEX-1GN73-0011-R8b-SM-CKZNY 60-69 years, male 163.8
GTEX-13OVL-0011-R8a-SM-5L3HH 50-59 years, male 162.2
GTEX-13SLX-0011-R8b-SM-5PNWZ 50-59 years, female 161.9
GTEX-1B996-0011-R8b-SM-79OOS 60-69 years, male 161.5
GTEX-13SLW-0011-R8b-SM-5SI64 70-79 years, male 159.8
GTEX-1I1HK-0011-R8b-SM-E8VN9 60-69 years, male 159.4
GTEX-13FXS-0011-R8a-SM-5J1MN 50-59 years, male 159.2
GTEX-1HCU6-0011-R8a-SM-CJI3R 60-69 years, female 159.1
GTEX-1A8G6-0011-R8a-SM-7P8PD 60-69 years, male 159.0
GTEX-1I1GS-0011-R8b-SM-CKZPE 60-69 years, male 158.9
GTEX-15RJE-0011-R8a-SM-H7OGM 40-49 years, male 158.6
GTEX-1F48J-0011-R8a-SM-9OSWW 50-59 years, female 158.3
GTEX-ZVZQ-0011-R8a-SM-51MR5 60-69 years, female 157.8
GTEX-16Z82-0011-R8a-SM-7DUEX 60-69 years, male 157.5
GTEX-1O9I2-0011-R8a-SM-F2TAX 50-59 years, male 156.9
GTEX-111FC-0011-R8b-SM-GI4VS 60-69 years, male 155.7
GTEX-1MCQQ-0011-R8b-SM-F341H 60-69 years, male 155.5
GTEX-Z93S-0011-R8a-SM-4RGNL 50-59 years, male 155.2
GTEX-14C5O-0011-R8a-SM-5YYAG 60-69 years, male 155.1
GTEX-11DXY-0011-R8a-SM-DO11M 60-69 years, male 154.6
GTEX-1GMR8-0011-R8a-SM-CKZNX 50-59 years, female 154.0
GTEX-1F52S-0011-R8a-SM-9OSXA 60-69 years, female 153.8
GTEX-11ONC-0011-R8b-SM-5NQ87 60-69 years, male 153.5
GTEX-1GN2E-0011-R8a-SM-CE6RK 60-69 years, male 153.3
GTEX-1399T-0011-R8b-SM-5IJD8 60-69 years, male 152.9
GTEX-1N2EF-0011-R8a-SM-F6481 60-69 years, male 152.8
GTEX-1LG7Y-0011-R8b-SM-F3K5C 50-59 years, male 152.1
GTEX-14BIL-0011-R8b-SM-69LQK 50-59 years, male 151.4
GTEX-QMR6-0011-R8A-SM-32PKJ 50-59 years, male 150.6
GTEX-13NYS-0011-R8a-SM-5MR5H 60-69 years, male 149.0
GTEX-11DXW-0011-R8a-SM-GIN8T 40-49 years, male 148.8
GTEX-1QMI2-0011-R8a-SM-F3429 60-69 years, male 148.8
GTEX-1GZ4I-0011-R8b-SM-9WG76 50-59 years, male 147.9
GTEX-1HGF4-0011-R8b-SM-CKZP9 60-69 years, male 147.7
GTEX-1A8G7-0011-R8a-SM-7P8S6 60-69 years, male 145.5
GTEX-1BAJH-0011-R8a-SM-7MXUB 70-79 years, male 145.5
GTEX-1HCVE-0011-R8a-SM-ARU7A 50-59 years, male 145.4
GTEX-1P4AB-0011-R8a-SM-F341R 50-59 years, male 144.8
GTEX-1N2EE-0011-R8a-SM-F3K4X 60-69 years, male 144.2
GTEX-12ZZX-0011-R8a-SM-5DUW8 40-49 years, female 143.8
GTEX-145MH-0011-R8a-SM-5PNUL 50-59 years, male 140.0
GTEX-X4XX-0011-R8B-SM-46MWM 60-69 years, male 139.6
GTEX-16NPV-0011-R8a-SM-7EPH8 50-59 years, female 138.8
GTEX-1RDX4-0011-R8a-SM-G8LLT 50-59 years, female 138.4
GTEX-NL4W-0011-R8a-SM-2I3G4 50-59 years, male 137.0
GTEX-WHSE-0011-R8A-SM-3P5Z1 20-29 years, male 136.7
GTEX-1HT8W-0011-R8b-SM-CM2SX 30-39 years, male 136.1
GTEX-ZAJG-0011-R8a-SM-H6Q6K 50-59 years, female 135.7
GTEX-13VXU-0011-R8b-SM-GJ3RR 50-59 years, male 135.6
GTEX-15CHQ-0011-R8b-SM-CNPO4 60-69 years, male 135.2
GTEX-13OW5-0011-R8a-SM-5L3GQ 60-69 years, male 134.4
GTEX-1F88E-0011-R8a-SM-CJI2H 60-69 years, female 134.0
GTEX-1IDJH-0011-R8b-SM-ARZLL 70-79 years, male 133.7
GTEX-12WSM-0011-R8a-SM-5DUWJ 60-69 years, male 133.6
GTEX-147F4-0011-R8b-SM-5S2UN 50-59 years, male 132.7
GTEX-T5JC-0011-R8A-SM-32PLM 20-29 years, male 132.3
GTEX-13JVG-0011-R8a-SM-5KM3E 60-69 years, male 131.3
GTEX-1H1ZS-0011-R8b-SM-A9SKA 70-79 years, male 130.5
GTEX-13PLJ-0011-R8a-SM-GJ3QG 60-69 years, female 129.8
GTEX-14PJO-0011-R8a-SM-6AJAL 60-69 years, male 128.6
GTEX-X261-0011-R8A-SM-4E3I5 50-59 years, male 128.4
GTEX-1192X-0011-R8b-SM-DO11U 50-59 years, male 126.8
GTEX-1R46S-0011-R8a-SM-F3K4Q 60-69 years, female 124.9
GTEX-145LS-0011-R8b-SM-5PNXA 60-69 years, female 124.6
GTEX-1CB4H-0011-R8b-SM-CJI26 60-69 years, female 123.5
GTEX-11ZTS-0011-R8a-SM-57WDI 60-69 years, female 122.7
GTEX-1JJEA-0011-R8a-SM-F3419 60-69 years, male 122.7
GTEX-14PN4-0011-R8a-SM-6EU1H 50-59 years, male 121.7
GTEX-1NV5F-0011-R8b-SM-F647Z 60-69 years, female 121.7
GTEX-13X6J-0011-R8b-SM-5PNUA 50-59 years, male 121.1
GTEX-1IKOH-0011-R8a-SM-A9SKG 60-69 years, female 120.3
GTEX-RVPV-0011-R8A-SM-F21II 60-69 years, male 119.6
GTEX-16GPK-0011-R8a-SM-79OMQ 60-69 years, male 119.4
GTEX-PWO3-0011-R8A-SM-2I5GD 60-69 years, female 118.7
GTEX-1HSKV-0011-R8a-SM-CL54X 60-69 years, male 118.6
GTEX-QVJO-0011-R8A-SM-447C7 60-69 years, female 118.4
GTEX-S7SE-0011-R8A-SM-F649T 50-59 years, male 118.3
GTEX-13PDP-0011-R8b-SM-5O9CS 60-69 years, male 118.0
GTEX-1LVA9-0011-R8a-SM-F3K5G 50-59 years, male 118.0
GTEX-18465-0011-R8b-SM-7LG6O 50-59 years, male 117.8
GTEX-1GZHY-0011-R8b-SM-9OSWK 50-59 years, female 117.6
GTEX-ZDXO-0011-R8a-SM-4WWD7 60-69 years, male 117.2
GTEX-11ZUS-0011-R8a-SM-5BC73 30-39 years, male 116.9
GTEX-15SHU-0011-R8a-SM-H6Q7V 40-49 years, female 116.7
GTEX-1POEN-0011-R8b-SM-F647O 30-39 years, female 116.3
GTEX-17EVQ-0011-R8a-SM-7189T 70-79 years, male 116.2
GTEX-1N5O9-0011-R8a-SM-F649C 60-69 years, male 116.2
GTEX-13O3O-0011-R8b-SM-5LUAL 60-69 years, female 115.6
GTEX-13CF2-0011-R8b-SM-5IJCX 60-69 years, male 115.5
GTEX-17F97-0011-R8a-SM-7DUET 50-59 years, male 115.4
GTEX-1JMPZ-0011-R8b-SM-F341A 30-39 years, male 115.4
GTEX-ZXG5-0011-R8a-SM-57WD1 60-69 years, male 114.5
GTEX-11DZ1-0011-R8b-SM-DNZZI 50-59 years, male 114.1
GTEX-YFC4-0011-R8a-SM-4SOK3 40-49 years, female 112.9
GTEX-1ICLZ-0011-R8b-SM-ACKX4 60-69 years, male 112.7
GTEX-1GF9W-0011-R8b-SM-9QEIR 60-69 years, male 112.0
GTEX-1F6I4-0011-R8a-SM-9QEIA 60-69 years, male 110.9
GTEX-14PQA-0011-R8b-SM-6AJAB 50-59 years, female 109.4
GTEX-1PPGY-0011-R8a-SM-F649R 60-69 years, male 109.1
GTEX-11WQC-0011-R8b-SM-57WCH 60-69 years, male 108.9
GTEX-T6MN-0011-R8A-SM-32QP3 50-59 years, male 108.7
GTEX-13QJC-0011-R8b-SM-5S2U6 60-69 years, female 108.2
GTEX-13OW8-0011-R8a-SM-5L3G5 60-69 years, male 108.1
GTEX-1JMQK-0011-R8a-SM-G8LMS 60-69 years, male 108.0
GTEX-1GN1U-0011-R8a-SM-CL537 50-59 years, female 107.6
GTEX-15DYW-0011-R8b-SM-GRR3B 60-69 years, female 107.5
GTEX-1KANB-0011-R8a-SM-F3K5N 50-59 years, male 107.2
GTEX-1E2YA-0011-R8a-SM-CKZNG 50-59 years, male 107.0
GTEX-1477Z-0011-R8b-SM-5S2RG 60-69 years, male 106.8
GTEX-1RLM8-0011-R8a-SM-EYYXR 50-59 years, male 105.6
GTEX-132Q8-0011-R8b-SM-5DUWX 60-69 years, male 105.4
GTEX-13X6I-0011-R8a-SM-5PNZF 60-69 years, male 104.8
GTEX-P44H-0011-R8A-SM-2XCEL 40-49 years, male 104.5
GTEX-131XW-0011-R8a-SM-5DUWY 50-59 years, female 102.5
GTEX-1CB4G-0011-R8b-SM-9WG7H 60-69 years, male 102.5
GTEX-14LZ3-0011-R8b-SM-COH3M 60-69 years, female 101.9
GTEX-11GS4-0011-R8b-SM-GI4XA 60-69 years, male 101.2
GTEX-14JIY-0011-R8a-SM-6AJAP 60-69 years, male 97.2
GTEX-1IY9M-0011-R8a-SM-EYYWW 60-69 years, male 96.4
GTEX-13FLW-0011-R8b-SM-5J1MZ 50-59 years, male 95.9
GTEX-14E7W-0011-R8b-SM-GQ1D6 70-79 years, male 94.9
GTEX-1JN1M-0011-R8b-SM-F6485 60-69 years, female 94.8
GTEX-1RQED-0011-R8a-SM-G8LKO 60-69 years, male 94.7
GTEX-1KWVE-0011-R8a-SM-F3K4V 30-39 years, male 93.8
GTEX-12696-0011-R8a-SM-GINAP 60-69 years, male 93.6
GTEX-ZVT3-0011-R8b-SM-57WDJ 60-69 years, female 93.6
GTEX-1445S-0011-R8a-SM-5PNWX 60-69 years, male 92.7
GTEX-16XZZ-0011-R8b-SM-7LT8S 60-69 years, male 92.0
GTEX-OXRN-0011-R8A-SM-E9TI1 50-59 years, male 91.9
GTEX-ZUA1-0011-R8b-SM-51MST 40-49 years, male 91.5
GTEX-13OVJ-0011-R8b-SM-5L3FS 50-59 years, female 91.4
GTEX-XMD1-0011-R8A-SM-4AT48 60-69 years, male 91.4
GTEX-1H1DG-0011-R8a-SM-CL54Z 70-79 years, male 90.6
GTEX-1HBPH-0011-R8b-SM-CL556 40-49 years, female 90.6
GTEX-1RAZS-0011-R8a-SM-F2TBI 50-59 years, male 89.1
GTEX-ZYY3-0011-R8a-SM-H7OHF 60-69 years, female 89.1
GTEX-1R9K4-0011-R8b-SM-F649L 60-69 years, male 89.0
GTEX-1HBPI-0011-R8a-SM-A9G1S 50-59 years, male 87.9
GTEX-1PWST-0011-R8a-SM-F3K5P 70-79 years, male 87.1
GTEX-1H3O1-0011-R8a-SM-CL555 60-69 years, male 86.5
GTEX-QDT8-0011-R8A-SM-G8W63 30-39 years, female 86.4
GTEX-11H98-0011-R8a-SM-5NQ8V 50-59 years, male 85.7
GTEX-1B8SF-0011-R8b-SM-7P8SX 60-69 years, male 85.6
GTEX-12126-0011-R8a-SM-GI4WV 20-29 years, male 85.5
GTEX-ZZPT-0011-R8a-SM-GQ1CW 50-59 years, male 84.8
GTEX-11DYG-0011-R8a-SM-DO93F 60-69 years, male 84.6
GTEX-1CAV2-0011-R8a-SM-GRR24 40-49 years, female 84.2
GTEX-11GSP-0011-R8b-SM-5NQ79 60-69 years, female 84.0
GTEX-WL46-0011-R8B-SM-H7OHG 50-59 years, male 83.4
GTEX-YJ89-0011-R8b-SM-4SOK8 60-69 years, male 82.5
GTEX-RNOR-0011-R8A-SM-EZ6MN 50-59 years, female 81.8
GTEX-1B8SG-0011-R8b-SM-7IGNW 50-59 years, male 81.2
GTEX-1C64N-0011-R8b-SM-7MGXE 50-59 years, male 77.5
GTEX-ZAB4-0011-R8b-SM-4SOKF 40-49 years, male 77.4
GTEX-12WSD-0011-R8b-SM-9QEGI 60-69 years, female 77.2
GTEX-13PVQ-0011-R8a-SM-GJ3PT 50-59 years, male 76.8
GTEX-11WQK-0011-R8a-SM-5BC7C 50-59 years, male 76.3
GTEX-12WSA-0011-R8a-SM-5P9EX 60-69 years, male 76.0
GTEX-1H1CY-0011-R8b-SM-CJI31 60-69 years, female 75.1
GTEX-11EI6-0011-R8a-SM-DO93M 60-69 years, male 74.4
GTEX-ZF28-0011-R8a-SM-4WWFW 60-69 years, male 73.2
GTEX-1F75A-0011-R8a-SM-CL539 50-59 years, male 72.7
GTEX-X4XY-0011-R8A-SM-46MVC 60-69 years, male 72.6
GTEX-1OJC4-0011-R8a-SM-F3K5B 50-59 years, female 72.3
GTEX-144GL-0011-R8a-SM-5Q5B1 50-59 years, male 71.6
GTEX-14753-0011-R8b-SM-5S2U1 60-69 years, male 70.2
GTEX-1JN6P-0011-R8a-SM-F6499 60-69 years, male 70.2
GTEX-WWYW-0011-R8A-SM-3NB3S 50-59 years, female 69.9
GTEX-13112-0011-R8b-SM-664OV 50-59 years, male 69.0
GTEX-1CAMQ-0011-R8a-SM-ARU85 40-49 years, male 68.3
GTEX-WVLH-0011-R8A-SM-3MJFC 50-59 years, male 67.0
GTEX-N7MS-0011-R8a-SM-2YUMK 60-69 years, male 65.6
GTEX-Y8DK-0011-R8B-SM-EYYVQ 60-69 years, male 64.5
GTEX-15G19-0011-R8b-SM-7KUL1 60-69 years, male 63.8
GTEX-11ZU8-0011-R8b-SM-GHWOM 60-69 years, male 62.1
GTEX-139TS-0011-R8a-SM-5J1NP 60-69 years, male 61.7
GTEX-1QEPI-0011-R8a-SM-G8LLI 60-69 years, female 60.4
GTEX-1QP6S-0011-R8a-SM-F649M 40-49 years, male 58.4
GTEX-1GN1V-0011-R8a-SM-CKZNV 60-69 years, male 58.1
GTEX-1H23P-0011-R8b-SM-A9G1G 60-69 years, male 57.7
GTEX-1CB4J-0011-R8a-SM-9QEHU 60-69 years, male 55.7
GTEX-15DCD-0011-R8b-SM-7KUEF 70-79 years, female 54.4
GTEX-11EMC-0011-R8b-SM-DO91Z 60-69 years, female 53.1
GTEX-11TTK-0011-R8b-SM-DO111 60-69 years, female 46.7
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HYPOTHALAMUS - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

98.2
Pig sample Sample description nTPM
Hypothalamus
nTPM: 98.2
Samples: 4

Max nTPM: 117.3
Min nTPM: 89.9
Sample A Female 117.3
Sample B Female 90.0
Sample C Male 95.7
Sample D Male 89.9

HYPOTHALAMUS - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

182.2
Mouse sample Sample description nTPM
Hypothalamus
nTPM: 182.2
Samples: 4

Max nTPM: 190.5
Min nTPM: 170.3
Sample A Male 183.5
Sample B Male 190.5
Sample C Female 184.5
Sample D Female 170.3

HYPOTHALAMUS - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

21.9
Allen experiment id Experiment description Expression energy
Hypothalamus
Expression energy: 21.9
77620309 Antisense, RP_070205_01_A10, Mouse strain C57BL/6J (56 days, male) 22.0
293903 Antisense, RP_040617_01_F01, Mouse strain C57BL/6J (56 days, male) 21.8
355883 Antisense, RP_040617_01_F01, Mouse strain C57BL/6J (56 days, male) 18.0
77869130 Antisense, RP_070205_01_A10, Mouse strain C57BL/6J (56 days, male) 15.0

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