MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:212.8 nTPM
HPA Brain:258.0 nTPM
GTEx:212.8 nTPM
FANTOM5:378.6 Scaled Tags Per Million
Mouse:269.5 nTPM
Allen mouse:9.7 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 258.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 181.3
2586 Male, age 75, left hemisphere 270.0
2666 Male, age 74, left hemisphere 200.5
2019 Male, age 18, unknown 199.5
1827 Male, age 72, unknown 197.2
2828 Female, age 72, unknown 193.6
1870 Female, age 42, unknown 166.3
2411 Female, age 72, unknown 158.1
1833 Male, age 53, unknown 156.7
1830 Male, age 51, unknown 154.8
2219 Male, age 76, both hemispheres 116.3
Dorsal raphe nucleus
nTPM: 185.7
2047 Male, age 72, unknown 201.9
2750 Male, age 76, both hemispheres 201.0
2298 Female, age 72, unknown 193.1
1828 Male, age 53, unknown 173.5
2016 Female, age 72, unknown 159.0
Inferior colliculus
nTPM: 182.2
1848 Female, age 42, unknown 190.8
2849 Male, age 72, unknown 182.3
1890 Male, age 53, unknown 181.4
2097 Female, age 72, unknown 174.2
Median raphe nucleus
nTPM: 258.0
2220 Male, age 76, midline 258.0
Periaquaductal grey, anterior
nTPM: 203.6
2502 Female, age 75, unknown 217.1
1795 Male, age 51, unknown 198.0
1947 Male, age 18, unknown 195.8
Periaquaductal grey, dorsal
nTPM: 211.8
2850 Male, age 76, both hemispheres 309.8
1840 Male, age 53, unknown 193.4
1831 Male, age 72, unknown 179.4
2464 Female, age 72, unknown 164.6
Periaquaductal grey, lateral
nTPM: 210.3
2140 Male, age 76, both hemispheres 303.5
2053 Male, age 18, unknown 178.1
2272 Male, age 74, both hemispheres 149.4
Pretectal area
nTPM: 206.2
2007 Male, age 72, unknown 250.8
1817 Female, age 42, unknown 245.3
2316 Male, age 76, right hemisphere 236.8
1816 Male, age 51, unknown 228.9
2667 Female, age 75, unknown 225.6
1944 Female, age 72, unknown 217.8
1815 Male, age 53, unknown 202.9
2224 Female, age 72, unknown 184.5
2825 Male, age 18, unknown 178.1
2407 Male, age 75, both hemispheres 155.4
2273 Male, age 74, both hemispheres 141.8
Red nucleus
nTPM: 179.1
1821 Female, age 72, unknown 212.2
1954 Female, age 42, unknown 193.2
2785 Male, age 18, unknown 191.6
2588 Male, age 74, left hemisphere 182.0
1904 Male, age 53, unknown 180.5
1865 Male, age 51, unknown 178.9
2227 Male, age 72, unknown 177.8
2769 Male, age 72, unknown 177.4
2823 Male, age 76, right hemisphere 176.2
2503 Female, age 72, unknown 168.8
2584 Male, age 75, left hemisphere 160.3
2725 Female, age 75, unknown 149.7
Substantia nigra
nTPM: 205.9
2665 Male, age 74, both hemispheres 268.7
1916 Female, age 42, unknown 230.8
1851 Male, age 51, unknown 226.2
1941 Male, age 53, unknown 210.8
2699 Male, age 18, unknown 203.3
1889 Female, age 72, unknown 201.7
2590 Female, age 75, unknown 193.3
2241 Male, age 72, unknown 182.3
2583 Male, age 75, right hemisphere 175.5
2409 Female, age 72, unknown 167.0
Superior colliculus
nTPM: 181.7
1796 Male, age 53, unknown 231.9
2087 Female, age 72, unknown 199.7
2261 Male, age 18, unknown 199.6
2668 Female, age 75, unknown 190.9
2664 Male, age 75, both hemispheres 180.4
1839 Male, age 51, unknown 177.0
1895 Male, age 76, right hemisphere 174.2
2587 Male, age 74, left hemisphere 166.7
1995 Male, age 72, unknown 154.9
1913 Female, age 42, unknown 141.6
Ventral tegmental area
nTPM: 189.6
2218 Male, age 76, both hemispheres 211.0
2223 Female, age 72, unknown 198.4
1915 Female, age 42, unknown 190.6
1942 Male, age 51, unknown 180.7
2021 Male, age 53, unknown 180.4
2410 Female, age 72, unknown 176.2

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 212.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 212.8
Samples: 183

Max nTPM: 1061.0
Min nTPM: 76.6
Std nTPM: 134.8
Median nTPM: 169.5
GTEX-1O9I2-0011-R2b-SM-F3K53 50-59 years, male 1061.0
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 759.0
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 647.5
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 565.6
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 533.4
GTEX-1117F-0011-R2b-SM-GI4VL 60-69 years, female 526.9
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 502.1
GTEX-XMD1-0011-R2B-SM-4AT5N 60-69 years, male 500.9
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 487.6
GTEX-15G19-0011-R2b-SM-H6Q7S 60-69 years, male 487.3
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 478.0
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 378.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 378.6
FF:10158-103A5 76 years, female 378.6

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 269.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 269.5
Samples: 4

Max nTPM: 278.1
Min nTPM: 258.1
Sample A Male 275.4
Sample B Male 266.4
Sample C Female 258.1
Sample D Female 278.1

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 9.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 9.7
1052 Antisense, RP_Baylor_103071, Mouse strain C57BL/6J (56 days, male) 9.7
1051 Antisense, RP_Baylor_103071, Mouse strain C57BL/6J (56 days, male) 7.0

Contact

The Project

The Human Protein Atlas

KAW logo The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.

contact@proteinatlas.org
GCBR logo Elixir core logo SciLifeLab logo Uppsala university logo KI logo KTH logo