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  • TSC22D1
BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
Brain proteome
Brain methods
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:120.9 nTPM
HPA Brain:188.4 nTPM
GTEx:120.9 nTPM
FANTOM5:432.7 Scaled Tags Per Million
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SPINAL CORD - Annotated protein expression
Pending normal tissue analysis

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

188.4
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 146.4
2565 Male, age 75, midline 206.0
1981 Female, age 72, midline 140.7
2194 Female, age 79, both hemispheres 138.0
2816 Male, age 47, midline 127.2
2048 Male, age 55, midline 120.2
Cervical spinal cord, dorsal horn
nTPM: 175.2
2297 Male, age 75, both hemispheres 290.3
1877 Male, age 55, unknown 163.4
2069 Male, age 47, both hemispheres 153.5
2173 Female, age 72, unknown 151.4
2721 Male, age 90, both hemispheres 147.9
2296 Male, age 66, both hemispheres 144.5
Cervical spinal cord, ventral horn
nTPM: 188.4
2480 Male, age 75, both hemispheres 299.5
2809 Male, age 90, both hemispheres 221.1
2098 Female, age 72, unknown 161.1
2295 Male, age 66, both hemispheres 157.1
2068 Male, age 55, unknown 146.7
2820 Female, age 79, both hemispheres 145.1

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

120.9
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 120.9
Samples: 204

Max nTPM: 362.4
Min nTPM: 46.8
Std nTPM: 54.8
Median nTPM: 106.0
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 362.4
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 322.8
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 316.5
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 297.9
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 290.0
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 287.4
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 285.9
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 265.8
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 241.9
GTEX-1LG7Y-0011-R9a-SM-G8LMA 50-59 years, male 235.5
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 223.8
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 218.8
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 212.3
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 211.9
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 204.3
GTEX-1O9I2-0011-R9b-SM-G8OKW 50-59 years, male 199.2
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 191.6
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 190.0
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 188.6
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 185.7
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 182.2
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 178.8
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 176.4
GTEX-14JFF-0011-R9b-SM-G9ERJ 60-69 years, male 175.8
GTEX-ZAJG-0011-R9a-SM-GNTAY 50-59 years, female 174.6
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 173.5
GTEX-NPJ7-0011-R9a-SM-G8W5X 60-69 years, female 172.0
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 170.8
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 169.2
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 166.7
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 166.3
GTEX-15UF6-0011-R9b-SM-GOQZG 70-79 years, female 165.5
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 164.9
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 163.8
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 163.2
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 162.0
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 161.1
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 159.5
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 157.7
GTEX-1JMOU-0011-R9b-SM-EY5YI 60-69 years, female 157.3
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 157.0
GTEX-1J8Q2-0011-R9b-SM-GPRYH 60-69 years, male 153.1
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 151.7
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 151.5
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 151.3
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 151.2
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 150.3
GTEX-1PWST-0011-R9a-SM-G8OMQ 70-79 years, male 150.3
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 149.5
GTEX-1J1OQ-0011-R9b-SM-GRR22 40-49 years, female 147.9
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 147.6
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 146.2
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 145.8
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 145.5
GTEX-1JMPZ-0011-R9a-SM-G8OLH 30-39 years, male 145.5
GTEX-1LKK1-0011-R9a-SM-G8OLY 50-59 years, female 141.5
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 141.4
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 140.4
GTEX-1JN6P-0011-R9a-SM-G8LM9 60-69 years, male 140.2
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 138.3
GTEX-1NV8Z-0011-R9b-SM-G8OME 60-69 years, male 138.2
GTEX-12WSI-0011-R9b-SM-GHWOU 50-59 years, male 138.1
GTEX-1LH75-0011-R9b-SM-EY5Y9 50-59 years, female 136.5
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 136.3
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 133.5
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 133.2
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 133.0
GTEX-1JMQL-0011-R9b-SM-G8LLH 50-59 years, female 132.9
GTEX-11GSO-0011-R9b-SM-GI4VN 60-69 years, male 132.5
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 131.5
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 131.5
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 131.5
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 130.4
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 128.3
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 126.7
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 126.7
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 125.0
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 122.8
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 122.6
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 121.9
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 120.3
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 119.5
GTEX-12584-0011-R9b-SM-GI4WC 40-49 years, male 118.5
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 117.6
GTEX-15SHU-0011-R9a-SM-GNIOE 40-49 years, female 117.5
GTEX-13QIC-0011-R9a-SM-GI4WO 60-69 years, female 116.6
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 115.9
GTEX-1POEN-0011-R9b-SM-G8LL1 30-39 years, female 115.1
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 115.0
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 113.7
GTEX-1LSVX-0011-R9b-SM-G8LL2 60-69 years, male 113.3
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 112.0
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 111.6
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 111.1
GTEX-1R9PO-0011-R9a-SM-G8LKP 60-69 years, female 110.8
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 110.1
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 109.4
GTEX-ZV68-0011-R9b-SM-GNTB9 50-59 years, female 109.1
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 108.4
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 107.8
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 107.7
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 106.2
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 105.8
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 104.5
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 104.0
GTEX-1PIIG-0011-R9b-SM-G8OLU 30-39 years, male 102.9
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 102.6
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 102.4
GTEX-1A8G6-0011-R9a-SM-GOQZR 60-69 years, male 101.8
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 101.3
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 101.0
GTEX-1JMQJ-0011-R9b-SM-G8OKN 50-59 years, male 101.0
GTEX-1PPGY-0011-R9a-SM-G8LMR 60-69 years, male 100.6
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 100.5
GTEX-1269C-0011-R9b-SM-GI4WM 60-69 years, female 100.1
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 100.1
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 99.5
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 98.9
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 97.9
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 97.5
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 97.4
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 95.6
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 95.5
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 95.3
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 94.7
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 93.7
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 93.3
GTEX-1N5O9-0011-R9a-SM-G8LLD 60-69 years, male 93.1
GTEX-X4EP-0011-R9B-SM-4QASI 60-69 years, female 93.1
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 93.0
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 92.8
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 92.2
GTEX-ZZPT-0011-R9a-SM-GOQYS 50-59 years, male 91.4
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 90.6
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 89.9
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 89.6
GTEX-1RDX4-0011-R9b-SM-G8LMG 50-59 years, female 89.3
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 88.9
GTEX-WVLH-0011-R9A-SM-H7OHH 50-59 years, male 88.3
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 87.7
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 87.5
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 87.5
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 87.1
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 86.6
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 86.5
GTEX-11NUK-0011-R9a-SM-GI4XG 50-59 years, male 86.4
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 86.3
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 85.5
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 84.3
GTEX-1MCQQ-0011-R9b-SM-G8OKM 60-69 years, male 84.0
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 83.9
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 83.8
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 83.7
GTEX-1QP6S-0011-R9a-SM-G8LMO 40-49 years, male 83.5
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 82.7
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 82.5
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 82.1
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 81.7
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 81.5
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 80.8
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 80.6
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 80.2
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 79.9
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 79.6
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 79.4
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 79.1
GTEX-113JC-0011-R9a-SM-H6Q8K 50-59 years, female 78.2
GTEX-16GPK-0011-R9a-SM-GPI9P 60-69 years, male 77.5
GTEX-13112-0011-R9b-SM-GHWOV 50-59 years, male 76.9
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 76.2
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 75.8
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 75.3
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 75.0
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 74.1
GTEX-1QMI2-0011-R9a-SM-G8ON7 60-69 years, male 73.9
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 72.4
GTEX-11ZU8-0011-R9b-SM-GHWOL 60-69 years, male 72.0
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 71.9
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 71.8
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 70.7
GTEX-12696-0011-R9a-SM-GHWPX 60-69 years, male 68.0
GTEX-13G51-0011-R9b-SM-GHWPS 60-69 years, male 66.8
GTEX-1IL2U-0011-R9a-SM-GPRYC 60-69 years, male 66.4
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 66.3
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 66.3
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 66.3
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 66.2
GTEX-1RAZS-0011-R9b-SM-G8OMS 50-59 years, male 65.8
GTEX-117XS-0011-R9b-SM-GHWOG 60-69 years, male 65.4
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 63.7
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 63.3
GTEX-11NV4-0011-R9a-SM-GHWPP 60-69 years, male 62.7
GTEX-111VG-0011-R9b-SM-GHWOB 60-69 years, male 62.1
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 61.0
GTEX-117YW-0011-R9a-SM-GHWPQ 50-59 years, male 59.1
GTEX-1212Z-0011-R9b-SM-GHWPM 60-69 years, male 58.7
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 56.7
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 56.2
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 55.9
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 54.6
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 53.9
GTEX-1KD4Q-0011-R9a-SM-G8LLU 40-49 years, male 49.5
GTEX-11DXW-0011-R9a-SM-GHWOE 40-49 years, male 49.1
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 46.8
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

432.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 432.7
FF:10181-103D1 60 years, female 508.1
FF:10159-103A6 76 years, female 357.2

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KAW logo The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.

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