A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
9.4
nTPM
Monaco:
58.3
nTPM
Schmiedel:
50.2
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
9.4
HPA sample
nTPM
Classical monocyte nTPM: 7.1
Samples: 6
Max nTPM: 8.9
Min nTPM: 5.4
P10809_1003
5.4
P10809_1020
6.6
P10809_1039
7.4
P10809_1058
5.9
P10809_1080
8.1
P10809_1107
8.9
Intermediate monocyte nTPM: 9.4
Samples: 6
Max nTPM: 12.3
Min nTPM: 7.1
P10809_1004
7.1
P10809_1023
7.3
P10809_1042
12.3
P10809_1061
9.5
P10809_1081
8.3
P10809_1108
11.7
Non-classical monocyte nTPM: 8.4
Samples: 5
Max nTPM: 13.1
Min nTPM: 0.0
P10809_1005
12.0
P10809_1053
13.1
P10809_1072
0.0
P10809_1082
7.4
P10809_1109
9.3
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
58.3
Monaco sample
nTPM
Classical monocyte nTPM: 40.2
Samples: 4
Max nTPM: 41.9
Min nTPM: 37.3
RHH5313_R3680
39.6
RHH5221_R3593
37.3
RHH5250_R3622
41.9
RHH5279_R3651
41.9
Intermediate monocyte nTPM: 58.3
Samples: 4
Max nTPM: 72.1
Min nTPM: 51.0
RHH5314_R3681
72.1
RHH5222_R3594
54.9
RHH5251_R3623
55.3
RHH5280_R3652
51.0
Non-classical monocyte nTPM: 51.9
Samples: 4
Max nTPM: 61.0
Min nTPM: 39.8
RHH5315_R3682
61.0
RHH5223_R3595
54.3
RHH5252_R3624
52.6
RHH5281_R3653
39.8
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
50.2
Schmiedel sample id
TPM
Classical monocyte TPM: 34.2
Samples: 91
Max TPM: 42.0
Min TPM: 26.4
MONOCYTES_1
42.0
MONOCYTES_2
41.7
MONOCYTES_3
41.1
MONOCYTES_4
40.9
MONOCYTES_5
40.1
MONOCYTES_6
39.5
MONOCYTES_7
39.5
MONOCYTES_8
39.3
MONOCYTES_9
39.1
MONOCYTES_10
39.1
MONOCYTES_11
38.7
MONOCYTES_12
38.5
MONOCYTES_13
38.5
MONOCYTES_14
38.3
MONOCYTES_15
38.1
MONOCYTES_16
37.5
MONOCYTES_17
37.4
MONOCYTES_18
37.3
MONOCYTES_19
37.3
MONOCYTES_20
37.2
MONOCYTES_21
36.7
MONOCYTES_22
36.6
MONOCYTES_23
36.5
MONOCYTES_24
36.4
MONOCYTES_25
36.1
MONOCYTES_26
36.0
MONOCYTES_27
35.8
MONOCYTES_28
35.8
MONOCYTES_29
35.5
MONOCYTES_30
35.5
MONOCYTES_31
35.5
MONOCYTES_32
35.5
MONOCYTES_33
35.4
MONOCYTES_34
35.2
MONOCYTES_35
35.0
MONOCYTES_36
34.8
MONOCYTES_37
34.8
MONOCYTES_38
34.6
MONOCYTES_39
34.6
MONOCYTES_40
34.4
MONOCYTES_41
34.2
MONOCYTES_42
34.1
MONOCYTES_43
34.1
MONOCYTES_44
34.0
MONOCYTES_45
34.0
MONOCYTES_46
34.0
MONOCYTES_47
33.9
MONOCYTES_48
33.8
MONOCYTES_49
33.8
MONOCYTES_50
33.7
MONOCYTES_51
33.7
MONOCYTES_52
33.6
MONOCYTES_53
33.6
MONOCYTES_54
33.5
MONOCYTES_55
33.3
MONOCYTES_56
33.3
MONOCYTES_57
33.2
MONOCYTES_58
33.2
MONOCYTES_59
33.1
MONOCYTES_60
33.1
MONOCYTES_61
33.0
MONOCYTES_62
33.0
MONOCYTES_63
32.9
MONOCYTES_64
32.6
MONOCYTES_65
32.4
MONOCYTES_66
32.3
MONOCYTES_67
32.2
MONOCYTES_68
32.0
MONOCYTES_69
31.7
MONOCYTES_70
31.6
MONOCYTES_71
31.6
MONOCYTES_72
31.6
MONOCYTES_73
31.4
MONOCYTES_74
31.3
MONOCYTES_75
31.1
MONOCYTES_76
31.1
MONOCYTES_77
30.7
MONOCYTES_78
30.7
MONOCYTES_79
30.6
MONOCYTES_80
30.3
MONOCYTES_81
30.2
MONOCYTES_82
30.0
MONOCYTES_83
29.8
MONOCYTES_84
29.7
MONOCYTES_85
29.3
MONOCYTES_86
29.3
MONOCYTES_87
28.8
MONOCYTES_88
28.1
MONOCYTES_89
27.4
MONOCYTES_90
27.4
MONOCYTES_91
26.4
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Non-classical monocyte TPM: 50.2
Samples: 90
Max TPM: 63.6
Min TPM: 37.9
M2_1
63.6
M2_2
59.7
M2_3
59.1
M2_4
58.8
M2_5
58.4
M2_6
58.0
M2_7
57.1
M2_8
57.0
M2_9
57.0
M2_10
56.8
M2_11
56.7
M2_12
56.3
M2_13
55.4
M2_14
54.9
M2_15
53.8
M2_16
53.7
M2_17
53.4
M2_18
53.4
M2_19
53.2
M2_20
53.1
M2_21
52.7
M2_22
52.3
M2_23
52.3
M2_24
52.2
M2_25
52.1
M2_26
51.8
M2_27
51.8
M2_28
51.7
M2_29
51.4
M2_30
51.2
M2_31
50.8
M2_32
50.7
M2_33
50.6
M2_34
50.6
M2_35
50.4
M2_36
50.4
M2_37
50.3
M2_38
50.3
M2_39
50.2
M2_40
50.2
M2_41
50.2
M2_42
50.0
M2_43
49.9
M2_44
49.7
M2_45
49.5
M2_46
49.3
M2_47
49.3
M2_48
49.3
M2_49
49.1
M2_50
49.0
M2_51
49.0
M2_52
48.8
M2_53
48.8
M2_54
48.8
M2_55
48.7
M2_56
48.6
M2_57
48.5
M2_58
48.4
M2_59
48.3
M2_60
48.3
M2_61
48.3
M2_62
48.2
M2_63
48.2
M2_64
48.1
M2_65
48.1
M2_66
48.0
M2_67
47.9
M2_68
47.7
M2_69
47.7
M2_70
47.4
M2_71
47.4
M2_72
47.2
M2_73
47.0
M2_74
46.9
M2_75
46.8
M2_76
46.7
M2_77
46.5
M2_78
46.3
M2_79
46.1
M2_80
46.1
M2_81
45.9
M2_82
45.5
M2_83
44.9
M2_84
44.6
M2_85
44.4
M2_86
44.3
M2_87
44.3
M2_88
44.2
M2_89
44.1
M2_90
37.9
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