A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
1158.7
nTPM
Monaco:
178.7
nTPM
Schmiedel:
89.1
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
1158.7
HPA sample
nTPM
Classical monocyte nTPM: 1101.6
Samples: 6
Max nTPM: 1458.4
Min nTPM: 772.9
P10809_1003
772.9
P10809_1020
1009.4
P10809_1039
1458.4
P10809_1058
885.1
P10809_1080
1025.8
P10809_1107
1458.0
Intermediate monocyte nTPM: 1140.1
Samples: 6
Max nTPM: 1832.5
Min nTPM: 682.1
P10809_1004
682.1
P10809_1023
1376.4
P10809_1042
1255.1
P10809_1061
791.1
P10809_1081
903.7
P10809_1108
1832.5
Non-classical monocyte nTPM: 1158.7
Samples: 5
Max nTPM: 1744.2
Min nTPM: 801.9
P10809_1005
801.9
P10809_1053
1063.3
P10809_1072
1218.0
P10809_1082
966.0
P10809_1109
1744.2
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
178.7
Monaco sample
nTPM
Classical monocyte nTPM: 132.9
Samples: 4
Max nTPM: 176.9
Min nTPM: 112.5
RHH5313_R3680
176.9
RHH5221_R3593
116.4
RHH5250_R3622
112.5
RHH5279_R3651
125.8
Intermediate monocyte nTPM: 178.7
Samples: 4
Max nTPM: 232.8
Min nTPM: 133.1
RHH5314_R3681
232.8
RHH5222_R3594
194.4
RHH5251_R3623
154.4
RHH5280_R3652
133.1
Non-classical monocyte nTPM: 154.4
Samples: 4
Max nTPM: 225.2
Min nTPM: 116.8
RHH5315_R3682
225.2
RHH5223_R3595
147.8
RHH5252_R3624
127.7
RHH5281_R3653
116.8
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
89.1
Schmiedel sample id
TPM
Classical monocyte TPM: 89.1
Samples: 91
Max TPM: 139.0
Min TPM: 39.1
MONOCYTES_1
139.0
MONOCYTES_2
138.8
MONOCYTES_3
133.0
MONOCYTES_4
129.6
MONOCYTES_5
128.1
MONOCYTES_6
127.8
MONOCYTES_7
125.6
MONOCYTES_8
124.3
MONOCYTES_9
122.8
MONOCYTES_10
122.5
MONOCYTES_11
121.8
MONOCYTES_12
120.7
MONOCYTES_13
119.6
MONOCYTES_14
117.9
MONOCYTES_15
117.4
MONOCYTES_16
114.2
MONOCYTES_17
114.0
MONOCYTES_18
112.0
MONOCYTES_19
111.9
MONOCYTES_20
110.6
MONOCYTES_21
110.5
MONOCYTES_22
109.7
MONOCYTES_23
109.3
MONOCYTES_24
107.4
MONOCYTES_25
107.3
MONOCYTES_26
106.2
MONOCYTES_27
105.8
MONOCYTES_28
105.4
MONOCYTES_29
105.1
MONOCYTES_30
104.7
MONOCYTES_31
100.9
MONOCYTES_32
100.1
MONOCYTES_33
99.5
MONOCYTES_34
98.6
MONOCYTES_35
98.4
MONOCYTES_36
98.3
MONOCYTES_37
97.5
MONOCYTES_38
96.7
MONOCYTES_39
94.3
MONOCYTES_40
93.3
MONOCYTES_41
90.8
MONOCYTES_42
89.6
MONOCYTES_43
87.6
MONOCYTES_44
87.4
MONOCYTES_45
87.1
MONOCYTES_46
87.0
MONOCYTES_47
85.1
MONOCYTES_48
84.8
MONOCYTES_49
84.4
MONOCYTES_50
83.7
MONOCYTES_51
83.0
MONOCYTES_52
82.8
MONOCYTES_53
82.1
MONOCYTES_54
82.0
MONOCYTES_55
81.5
MONOCYTES_56
81.1
MONOCYTES_57
81.0
MONOCYTES_58
80.9
MONOCYTES_59
80.1
MONOCYTES_60
79.1
MONOCYTES_61
78.3
MONOCYTES_62
78.0
MONOCYTES_63
77.9
MONOCYTES_64
77.1
MONOCYTES_65
74.8
MONOCYTES_66
74.6
MONOCYTES_67
73.6
MONOCYTES_68
73.3
MONOCYTES_69
72.8
MONOCYTES_70
71.2
MONOCYTES_71
70.7
MONOCYTES_72
68.7
MONOCYTES_73
66.6
MONOCYTES_74
65.6
MONOCYTES_75
65.2
MONOCYTES_76
63.5
MONOCYTES_77
63.5
MONOCYTES_78
62.4
MONOCYTES_79
59.9
MONOCYTES_80
57.8
MONOCYTES_81
56.7
MONOCYTES_82
54.9
MONOCYTES_83
54.6
MONOCYTES_84
50.6
MONOCYTES_85
50.1
MONOCYTES_86
48.3
MONOCYTES_87
47.7
MONOCYTES_88
46.3
MONOCYTES_89
42.8
MONOCYTES_90
39.7
MONOCYTES_91
39.1
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Non-classical monocyte TPM: 85.2
Samples: 90
Max TPM: 177.7
Min TPM: 16.5
M2_1
177.7
M2_2
141.2
M2_3
136.9
M2_4
136.4
M2_5
136.1
M2_6
134.3
M2_7
133.1
M2_8
127.9
M2_9
127.0
M2_10
126.1
M2_11
124.4
M2_12
122.1
M2_13
121.7
M2_14
120.6
M2_15
118.2
M2_16
117.9
M2_17
114.2
M2_18
113.7
M2_19
113.5
M2_20
112.0
M2_21
111.4
M2_22
110.9
M2_23
110.9
M2_24
110.3
M2_25
109.8
M2_26
109.3
M2_27
108.3
M2_28
106.5
M2_29
105.7
M2_30
103.6
M2_31
102.3
M2_32
101.5
M2_33
101.3
M2_34
100.6
M2_35
99.8
M2_36
97.7
M2_37
97.1
M2_38
96.3
M2_39
96.1
M2_40
95.9
M2_41
93.3
M2_42
91.5
M2_43
90.5
M2_44
90.0
M2_45
88.7
M2_46
88.4
M2_47
87.6
M2_48
83.7
M2_49
81.3
M2_50
79.2
M2_51
79.1
M2_52
78.1
M2_53
78.1
M2_54
77.7
M2_55
77.5
M2_56
77.4
M2_57
77.0
M2_58
76.0
M2_59
72.1
M2_60
71.1
M2_61
71.1
M2_62
70.8
M2_63
70.0
M2_64
67.4
M2_65
66.8
M2_66
64.9
M2_67
61.7
M2_68
60.9
M2_69
59.2
M2_70
57.4
M2_71
55.1
M2_72
55.0
M2_73
53.1
M2_74
49.4
M2_75
45.8
M2_76
43.9
M2_77
43.1
M2_78
40.6
M2_79
40.2
M2_80
39.2
M2_81
38.2
M2_82
37.2
M2_83
33.4
M2_84
33.1
M2_85
30.6
M2_86
30.6
M2_87
27.6
M2_88
19.3
M2_89
18.0
M2_90
16.5
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The Human Protein Atlas project is funded
