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A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
73.7
Sample id
Sample description
nTPM
Amygdala nTPM: 73.7
2814
Male, age 76, right hemisphere
113.7
2695
Female, age 67, right hemisphere
83.0
1987
Female, age 91, left hemisphere
58.6
2514
Male, age 75, right hemisphere
56.9
2517
Female, age 94, left hemisphere
56.5
Basal amygdala nTPM: 65.4
1955
Male, age 76, both hemispheres
86.8
2110
Male, age 80, left hemisphere
74.0
2685
Female, age 94, left hemisphere
66.6
2243
Female, age 91, right hemisphere
61.3
2827
Female, age 67, right hemisphere
53.9
2609
Male, age 75, right hemisphere
49.8
Central amygdala nTPM: 66.9
1905
Male, age 76, both hemispheres
105.1
2239
Male, age 80, left hemisphere
64.3
2826
Female, age 94, left hemisphere
61.3
2701
Female, age 91, right hemisphere
54.1
2515
Male, age 75, right hemisphere
49.7
Corticomedial amygdala nTPM: 57.0
2240
Male, age 76, both hemispheres
72.4
2829
Male, age 80, left hemisphere
65.4
2429
Female, age 94, left hemisphere
58.8
2242
Female, age 91, right hemisphere
52.4
2535
Female, age 67, right hemisphere
48.6
2428
Male, age 75, right hemisphere
44.5
Lateral amygdala nTPM: 66.5
1883
Male, age 76, both hemispheres
95.9
2534
Female, age 94, left hemisphere
75.3
2256
Male, age 80, left hemisphere
73.3
2255
Female, age 91, right hemisphere
55.2
2830
Female, age 67, right hemisphere
52.4
2516
Male, age 75, right hemisphere
46.9
AMYGDALA - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
36.0
GTEx sample id
Sample description
nTPM
Brain - Amygdala Average nTPM: 36.0
Samples: 181
Max nTPM: 61.9
Min nTPM: 17.1
Std nTPM: 8.1
Median nTPM: 35.4
GTEX-1HCU6-0011-R4b-SM-ARU74
60-69 years, female
61.9
GTEX-WHSE-0011-R4A-SM-3P5ZN
20-29 years, male
60.3
GTEX-WZTO-0011-R4A-SM-3NMC7
40-49 years, male
57.2
GTEX-1AX9I-0011-R4b-SM-7EPIB
60-69 years, male
55.8
GTEX-1RQEC-0011-R4b-SM-F342C
60-69 years, male
54.9
GTEX-1HBPH-0011-R4a-SM-A96RX
40-49 years, female
52.8
GTEX-11GS4-0011-R4a-SM-GJ3RJ
60-69 years, male
52.6
GTEX-ZAK1-0011-R4a-SM-6AJBK
50-59 years, female
50.9
GTEX-131XH-0011-R4b-SM-5DUWB
50-59 years, male
50.6
GTEX-1QP6S-0011-R4b-SM-F33ZY
40-49 years, male
50.1
GTEX-13112-0011-R4b-SM-5DUXL
50-59 years, male
49.7
GTEX-1B996-0011-R4b-SM-9OSVO
60-69 years, male
49.1
GTEX-1F48J-0011-R4b-SM-9OSVX
50-59 years, female
48.8
GTEX-14ASI-0011-R4a-SM-69LQ4
60-69 years, male
48.4
GTEX-YFC4-0011-R4a-SM-4RGLQ
40-49 years, female
47.6
GTEX-1JMLX-0011-R4a-SM-EY5YJ
50-59 years, male
47.4
GTEX-17EVP-0011-R4a-SM-79OML
40-49 years, male
46.8
GTEX-1JMOU-0011-R4b-SM-EY5ZL
60-69 years, female
46.7
GTEX-147F4-0011-R4b-SM-GJ3R4
50-59 years, male
46.6
GTEX-14E7W-0011-R4b-SM-62LEA
70-79 years, male
46.6
GTEX-XLM4-0011-R4B-SM-4AT5C
60-69 years, male
46.5
GTEX-14BMV-0011-R4a-SM-H6Q7P
50-59 years, male
45.8
GTEX-1N2EF-0011-R4a-SM-F341F
60-69 years, male
45.6
GTEX-13O3Q-0011-R4a-SM-5P9H2
50-59 years, male
44.7
GTEX-14C5O-0011-R4b-SM-G9ERF
60-69 years, male
44.0
GTEX-TSE9-0011-R4A-SM-3DB7H
60-69 years, female
44.0
GTEX-S7SE-0011-R4A-SM-2XCDB
50-59 years, male
43.8
GTEX-13QIC-0011-R4a-SM-5PNX8
60-69 years, female
43.7
GTEX-1HBPI-0011-R4a-SM-CJI3K
50-59 years, male
43.7
GTEX-X585-0011-R4B-SM-46MVH
50-59 years, male
43.7
GTEX-13OW5-0011-R4b-SM-5L3HS
60-69 years, male
43.4
GTEX-11DYG-0011-R4b-SM-GJ3RG
60-69 years, male
43.2
GTEX-1A3MX-0011-R4b-SM-7EWFK
60-69 years, male
43.1
GTEX-11NUK-0011-R4a-SM-DO12B
50-59 years, male
42.7
GTEX-1N2DW-0011-R4b-SM-EZ6MD
50-59 years, male
42.6
GTEX-15SHU-0011-R4b-SM-7IGLC
40-49 years, female
42.5
GTEX-1F7RK-0011-R4b-SM-9QEI7
20-29 years, female
42.3
GTEX-11DXY-0011-R4b-SM-GI4VR
60-69 years, male
42.1
GTEX-1LSVX-0011-R4b-SM-EXURP
60-69 years, male
41.7
GTEX-1HFI6-0011-R4b-SM-A96RT
40-49 years, male
41.6
GTEX-13N1W-0011-R4a-SM-5MR52
70-79 years, male
41.5
GTEX-13VXU-0011-R4b-SM-5O9CI
50-59 years, male
41.4
GTEX-1GN73-0011-R4b-SM-9QEIK
60-69 years, male
41.0
GTEX-1GTWX-0011-R4a-SM-C1YQI
60-69 years, male
41.0
GTEX-145LS-0011-R4b-SM-5S2UT
60-69 years, female
40.9
GTEX-12WSD-0011-R4b-SM-5LZUA
60-69 years, female
40.7
GTEX-Q2AG-0011-R4A-SM-2HMKA
40-49 years, female
40.7
GTEX-13N2G-0011-R4b-SM-5MR54
60-69 years, male
40.0
GTEX-X4XX-0011-R4B-SM-46MWL
60-69 years, male
40.0
GTEX-1PPGY-0011-R4a-SM-F3K4F
60-69 years, male
39.9
GTEX-12ZZY-0011-R4a-SM-GIN9F
60-69 years, male
39.8
GTEX-16YQH-0011-R4a-SM-7EPGI
30-39 years, male
39.8
GTEX-15DCD-0011-R4a-SM-69LPB
70-79 years, female
39.5
GTEX-11GSO-0011-R4b-SM-GJ3R8
60-69 years, male
39.4
GTEX-15DYW-0011-R4a-SM-6M46V
60-69 years, female
39.3
GTEX-11ZTS-0011-R4b-SM-GINAQ
60-69 years, female
39.2
GTEX-1KWVE-0011-R4a-SM-F3K5X
30-39 years, male
39.2
GTEX-14ABY-0011-R4b-SM-5S2VN
50-59 years, male
39.1
GTEX-1I1GR-0011-R4a-SM-CMKHC
60-69 years, male
39.0
GTEX-14PJM-0011-R4a-SM-5YYAS
50-59 years, female
38.9
GTEX-NPJ7-0011-R4a-SM-2I3GJ
60-69 years, female
38.9
GTEX-11ZVC-0011-R4a-SM-5BC6Z
50-59 years, female
38.8
GTEX-1313W-0011-R4b-SM-5KLZV
50-59 years, female
38.8
GTEX-13RTJ-0011-R4b-SM-5PNX1
60-69 years, male
38.8
GTEX-13SLW-0011-R4b-SM-5S2W2
70-79 years, male
38.8
GTEX-11NV4-0011-R4a-SM-GI4XC
60-69 years, male
38.7
GTEX-13X6K-0011-R4b-SM-5P9HO
60-69 years, female
38.6
GTEX-12WSC-0011-R4a-SM-H6Q8M
50-59 years, male
38.4
GTEX-1NV8Z-0011-R4b-SM-G8LMZ
60-69 years, male
38.4
GTEX-1E1VI-0011-R4b-SM-9QEHV
50-59 years, male
38.2
GTEX-1F75A-0011-R4a-SM-ARL8J
50-59 years, male
37.9
GTEX-13O3O-0011-R4b-SM-5KM3F
60-69 years, female
37.8
GTEX-15EO6-0011-R4a-SM-7KUKZ
50-59 years, male
37.6
GTEX-1B8L1-0011-R4a-SM-7EWFJ
60-69 years, male
37.6
GTEX-117XS-0011-R4b-SM-GJ3PR
60-69 years, male
37.4
GTEX-13OW7-0011-R4b-SM-5O9CX
50-59 years, male
37.3
GTEX-1H1ZS-0011-R4b-SM-CKZO7
70-79 years, male
37.1
GTEX-111FC-0011-R4a-SM-GIN8K
60-69 years, male
36.7
GTEX-131YS-0011-R4a-SM-5DUVL
60-69 years, female
36.6
GTEX-1HB9E-0011-R4b-SM-ARZLS
50-59 years, male
36.4
GTEX-11OF3-0011-R4a-SM-GJ3RB
60-69 years, male
36.2
GTEX-12WSF-0011-R4b-SM-5HL88
70-79 years, male
36.2
GTEX-1IY9M-0011-R4a-SM-C1YQ2
60-69 years, male
36.2
GTEX-12WSH-0011-R4a-SM-5GU6K
50-59 years, male
36.0
GTEX-1P4AB-0011-R4b-SM-F2T9S
50-59 years, male
36.0
GTEX-1OJC4-0011-R4a-SM-F3K54
50-59 years, female
35.9
GTEX-1POEN-0011-R4b-SM-F3K4O
30-39 years, female
35.9
GTEX-ZYY3-0011-R4a-SM-GQ1CY
60-69 years, female
35.7
GTEX-NL4W-0011-R4a-SM-2I5GZ
50-59 years, male
35.6
GTEX-17HG3-0011-R4a-SM-7IGLL
30-39 years, female
35.4
GTEX-N7MT-0011-R4a-SM-2I3G9
60-69 years, female
35.4
GTEX-1MJK2-0011-R4a-SM-F3426
50-59 years, male
35.3
GTEX-1CB4G-0011-R4b-SM-CJI28
60-69 years, male
35.1
GTEX-1LVA9-0011-R4a-SM-F2TA2
50-59 years, male
35.1
GTEX-13NYB-0011-R4b-SM-9QEGJ
40-49 years, male
35.0
GTEX-1EX96-0011-R4a-SM-ARU82
50-59 years, male
35.0
GTEX-1PIIG-0011-R4a-SM-F2TAQ
30-39 years, male
35.0
GTEX-144GL-0011-R4a-SM-5PNUI
50-59 years, male
34.9
GTEX-1J8EW-0011-R4b-SM-ARU89
60-69 years, female
34.8
GTEX-1ICLZ-0011-R4a-SM-CMKHL
60-69 years, male
34.7
GTEX-1EMGI-0011-R4b-SM-CJI2D
60-69 years, male
34.5
GTEX-1N2EE-0011-R4a-SM-EXOII
60-69 years, male
34.5
GTEX-13OW8-0011-R4a-SM-9WG6V
60-69 years, male
34.4
GTEX-1F6IF-0011-R4b-SM-CKZNJ
60-69 years, male
34.3
GTEX-1JMQK-0011-R4a-SM-G8LLQ
60-69 years, male
34.3
GTEX-11PRG-0011-R4a-SM-DNZZR
50-59 years, male
34.1
GTEX-13X6J-0011-R4b-SM-5P9K4
50-59 years, male
34.1
GTEX-145LU-0011-R4b-SM-5P9K1
50-59 years, male
34.1
GTEX-14DAQ-0011-R4a-SM-5YYAI
60-69 years, female
34.1
GTEX-1GF9W-0011-R4a-SM-CE6RH
60-69 years, male
34.1
GTEX-1GMR8-0011-R4a-SM-9OSX1
50-59 years, female
33.9
GTEX-ZVZQ-0011-R4b-SM-57WCZ
60-69 years, female
33.8
GTEX-1C6VR-0011-R4b-SM-9QEGZ
60-69 years, male
33.7
GTEX-1O9I2-0011-R4b-SM-F3K4K
50-59 years, male
33.7
GTEX-RNOR-0011-R4A-SM-3GAD3
50-59 years, female
33.7
GTEX-1445S-0011-R4a-SM-5PNWN
60-69 years, male
33.5
GTEX-13OVH-0011-R4a-SM-5KM3W
70-79 years, male
33.3
GTEX-13OVJ-0011-R4b-SM-5P9H5
50-59 years, female
33.3
GTEX-1RDX4-0011-R4b-SM-F3K43
50-59 years, female
33.0
GTEX-1JJ6O-0011-R4a-SM-EY5YM
60-69 years, male
32.8
GTEX-1JN1M-0011-R4b-SM-F6494
60-69 years, female
32.6
GTEX-14JIY-0011-R4b-SM-5ZZV7
60-69 years, male
32.5
GTEX-15RJE-0011-R4a-SM-H7OH4
40-49 years, male
32.3
GTEX-1PWST-0011-R4a-SM-F2T9X
70-79 years, male
32.3
GTEX-13OVL-0011-R4b-SM-5L3HV
50-59 years, male
32.2
GTEX-13SLX-0011-R4a-SM-5O9BJ
50-59 years, female
32.2
GTEX-WVLH-0011-R4A-SM-3MJFS
50-59 years, male
32.0
GTEX-15CHQ-0011-R4a-SM-686ZX
60-69 years, male
31.9
GTEX-1399T-0011-R4b-SM-5DUVX
60-69 years, male
31.5
GTEX-1H3O1-0011-R4b-SM-A9SKE
60-69 years, male
31.3
GTEX-1RQED-0011-R4b-SM-F2I2X
60-69 years, male
31.3
GTEX-14PQA-0011-R4b-SM-6AJBU
50-59 years, female
31.2
GTEX-14JG1-0011-R4b-SM-62LEB
40-49 years, male
31.0
GTEX-1JMQJ-0011-R4b-SM-EXUT8
50-59 years, male
30.9
GTEX-11ONC-0011-R4b-SM-DO93H
60-69 years, male
30.2
GTEX-14PN4-0011-R4a-SM-686ZT
50-59 years, male
30.2
GTEX-1LB8K-0011-R4b-SM-F6487
50-59 years, male
30.1
GTEX-PVOW-0011-R4A-SM-H6Q8O
40-49 years, male
29.7
GTEX-13NYS-0011-R4b-SM-5MR3O
60-69 years, male
29.6
GTEX-14BIM-0011-R4b-SM-5S2RK
60-69 years, female
29.6
GTEX-15ER7-0011-R4a-SM-6M46S
20-29 years, female
29.5
GTEX-1H3NZ-0011-R4a-SM-CL54T
60-69 years, male
29.0
GTEX-1GZ4I-0011-R4a-SM-9QEI9
50-59 years, male
28.7
GTEX-13OW6-0011-R4a-SM-5O9DX
50-59 years, male
28.3
GTEX-1J1OQ-0011-R4a-SM-D4P2A
40-49 years, female
28.3
GTEX-ZZPT-0011-R4a-SM-GPRX4
50-59 years, male
28.3
GTEX-14JFF-0011-R4a-SM-5ZZV5
60-69 years, male
28.2
GTEX-1RLM8-0011-R4a-SM-F2TBL
50-59 years, male
28.2
GTEX-13X6I-0011-R4b-SM-5PNU9
60-69 years, male
28.1
GTEX-147GR-0011-R4a-SM-5S2V2
60-69 years, male
28.1
GTEX-QVUS-0011-R4A-SM-3GAE7
60-69 years, female
27.8
GTEX-13QJC-0011-R4a-SM-H65ZP
60-69 years, female
27.6
GTEX-1LH75-0011-R4a-SM-F2TAM
50-59 years, female
27.6
GTEX-13JVG-0011-R4a-SM-5MR4C
60-69 years, male
27.2
GTEX-17F97-0011-R4b-SM-7KFS2
50-59 years, male
27.2
GTEX-1C6WA-0011-R4a-SM-9QEH2
60-69 years, male
27.2
GTEX-13FHO-0011-R4b-SM-H6611
60-69 years, male
27.0
GTEX-13CZV-0011-R4b-SM-5J2NY
60-69 years, male
26.8
GTEX-QVJO-0011-R4A-SM-2S1QL
60-69 years, female
26.7
GTEX-1LVAO-0011-R4a-SM-EXURO
60-69 years, male
26.6
GTEX-13PLJ-0011-R4b-SM-GJ3R6
60-69 years, female
26.4
GTEX-1H1DG-0011-R4a-SM-CE6RQ
70-79 years, male
25.9
GTEX-13PVQ-0011-R4a-SM-5O9CT
50-59 years, male
25.7
GTEX-13FLV-0011-R4a-SM-5LZYU
50-59 years, male
25.6
GTEX-1H23P-0011-R4b-SM-CL54R
60-69 years, male
25.5
GTEX-139T8-0011-R4a-SM-5HL54
60-69 years, male
25.3
GTEX-1H1CY-0011-R4b-SM-CJI3G
60-69 years, female
25.1
GTEX-NPJ8-0011-R4a-SM-2HML3
40-49 years, male
24.8
GTEX-11ZU8-0011-R4a-SM-5BC6Y
60-69 years, male
24.4
GTEX-17EVQ-0011-R4b-SM-7LT94
70-79 years, male
24.4
GTEX-1J8Q2-0011-R4a-SM-ADEHA
60-69 years, male
24.4
GTEX-ZAB4-0011-R4a-SM-4SOKB
40-49 years, male
24.2
GTEX-1QMI2-0011-R4b-SM-F3K4R
60-69 years, male
23.3
GTEX-11TTK-0011-R4a-SM-DNZZU
60-69 years, female
22.6
GTEX-1117F-0011-R4b-SM-GI4VM
60-69 years, female
22.5
GTEX-12ZZW-0011-R4a-SM-5DUX9
50-59 years, male
22.0
GTEX-12ZZZ-0011-R4b-SM-5DUV7
60-69 years, male
21.9
GTEX-1LKK1-0011-R4b-SM-EY5YA
50-59 years, female
21.8
GTEX-1R46S-0011-R4b-SM-F2TBF
60-69 years, female
21.1
GTEX-12WSA-0011-R4a-SM-57WB7
60-69 years, male
20.1
GTEX-OHPN-0011-R4A-SM-2I5FD
60-69 years, female
17.1
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AMYGDALA - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
63.6
Pig sample
Sample description
nTPM
Amygdala nTPM: 63.6
Samples: 4
Max nTPM: 82.4
Min nTPM: 52.5
Sample A
Female
82.4
Sample B
Female
52.5
Sample C
Male
62.3
Sample D
Male
57.2
AMYGDALA - Mouse RNA-seqi
RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
78.7
Mouse sample
Sample description
nTPM
Amygdala nTPM: 78.7
Samples: 4
Max nTPM: 89.1
Min nTPM: 71.8
Sample A
Male
76.4
Sample B
Male
77.4
Sample C
Female
89.1
Sample D
Female
71.8
AMYGDALA - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.
The Human Protein Atlas project is funded
