A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
1.2
nTPM
Monaco:
10.0
nTPM
Schmiedel:
37.0
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
1.2
HPA sample
nTPM
Memory B-cell nTPM: 0.6
Samples: 6
Max nTPM: 3.4
Min nTPM: 0.0
P10809_1017
0.0
P10809_1025
0.0
P10809_1044
3.4
P10809_1063
0.0
P10809_1092
0.0
P10809_1105
0.0
Naive B-cell nTPM: 1.2
Samples: 6
Max nTPM: 1.8
Min nTPM: 0.0
P10809_1011
1.8
P10809_1029
1.0
P10809_1048
0.0
P10809_1067
1.4
P10809_1091
1.3
P10809_1104
1.7
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
10.0
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 5.0
Samples: 4
Max nTPM: 14.4
Min nTPM: 0.8
RHH5310_R3677
1.3
RHH5218_R3590
14.4
RHH5247_R3619
3.5
RHH5276_R3648
0.8
Naive B-cell nTPM: 10.0
Samples: 4
Max nTPM: 18.4
Min nTPM: 4.0
RHH5308_R3675
7.3
RHH5216_R3588
10.2
RHH5245_R3617
18.4
RHH5274_R3646
4.0
Non-switched memory B-cell nTPM: 1.4
Samples: 4
Max nTPM: 3.2
Min nTPM: 0.0
RHH5309_R3676
0.0
RHH5217_R3589
2.5
RHH5246_R3618
3.2
RHH5275_R3647
0.0
Plasmablast nTPM: 0.0
Samples: 4
Max nTPM: 0.0
Min nTPM: 0.0
RHH5312_R3679
0.0
RHH5220_R3592
0.0
RHH5249_R3621
0.0
RHH5278_R3650
0.0
Switched memory B-cell nTPM: 1.3
Samples: 4
Max nTPM: 2.7
Min nTPM: 0.0
RHH5311_R3678
0.0
RHH5219_R3591
2.7
RHH5248_R3620
0.9
RHH5277_R3649
1.5
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
37.0
Schmiedel sample id
TPM
Naive B-cell TPM: 37.0
Samples: 91
Max TPM: 81.3
Min TPM: 7.2
B_CELL_NAIVE_1
81.3
B_CELL_NAIVE_2
78.0
B_CELL_NAIVE_3
76.5
B_CELL_NAIVE_4
75.8
B_CELL_NAIVE_5
75.1
B_CELL_NAIVE_6
69.9
B_CELL_NAIVE_7
65.8
B_CELL_NAIVE_8
61.5
B_CELL_NAIVE_9
58.2
B_CELL_NAIVE_10
57.2
B_CELL_NAIVE_11
57.0
B_CELL_NAIVE_12
56.2
B_CELL_NAIVE_13
55.6
B_CELL_NAIVE_14
54.2
B_CELL_NAIVE_15
53.9
B_CELL_NAIVE_16
53.8
B_CELL_NAIVE_17
53.7
B_CELL_NAIVE_18
53.2
B_CELL_NAIVE_19
52.9
B_CELL_NAIVE_20
51.7
B_CELL_NAIVE_21
51.5
B_CELL_NAIVE_22
50.8
B_CELL_NAIVE_23
50.3
B_CELL_NAIVE_24
50.0
B_CELL_NAIVE_25
50.0
B_CELL_NAIVE_26
49.1
B_CELL_NAIVE_27
46.1
B_CELL_NAIVE_28
44.9
B_CELL_NAIVE_29
44.3
B_CELL_NAIVE_30
42.3
B_CELL_NAIVE_31
42.0
B_CELL_NAIVE_32
41.9
B_CELL_NAIVE_33
41.4
B_CELL_NAIVE_34
40.7
B_CELL_NAIVE_35
40.2
B_CELL_NAIVE_36
39.3
B_CELL_NAIVE_37
38.9
B_CELL_NAIVE_38
38.7
B_CELL_NAIVE_39
38.5
B_CELL_NAIVE_40
38.4
B_CELL_NAIVE_41
38.4
B_CELL_NAIVE_42
37.0
B_CELL_NAIVE_43
36.4
B_CELL_NAIVE_44
36.0
B_CELL_NAIVE_45
35.4
B_CELL_NAIVE_46
34.6
B_CELL_NAIVE_47
34.1
B_CELL_NAIVE_48
33.3
B_CELL_NAIVE_49
33.0
B_CELL_NAIVE_50
32.7
B_CELL_NAIVE_51
32.4
B_CELL_NAIVE_52
32.0
B_CELL_NAIVE_53
32.0
B_CELL_NAIVE_54
31.4
B_CELL_NAIVE_55
30.8
B_CELL_NAIVE_56
30.5
B_CELL_NAIVE_57
30.4
B_CELL_NAIVE_58
27.9
B_CELL_NAIVE_59
27.7
B_CELL_NAIVE_60
27.6
B_CELL_NAIVE_61
27.6
B_CELL_NAIVE_62
27.2
B_CELL_NAIVE_63
27.0
B_CELL_NAIVE_64
26.3
B_CELL_NAIVE_65
25.9
B_CELL_NAIVE_66
25.7
B_CELL_NAIVE_67
24.9
B_CELL_NAIVE_68
24.8
B_CELL_NAIVE_69
23.3
B_CELL_NAIVE_70
23.2
B_CELL_NAIVE_71
23.1
B_CELL_NAIVE_72
22.6
B_CELL_NAIVE_73
21.7
B_CELL_NAIVE_74
20.6
B_CELL_NAIVE_75
20.6
B_CELL_NAIVE_76
20.5
B_CELL_NAIVE_77
20.1
B_CELL_NAIVE_78
19.0
B_CELL_NAIVE_79
16.3
B_CELL_NAIVE_80
16.2
B_CELL_NAIVE_81
15.7
B_CELL_NAIVE_82
15.7
B_CELL_NAIVE_83
15.3
B_CELL_NAIVE_84
14.0
B_CELL_NAIVE_85
13.1
B_CELL_NAIVE_86
13.0
B_CELL_NAIVE_87
11.9
B_CELL_NAIVE_88
11.2
B_CELL_NAIVE_89
9.0
B_CELL_NAIVE_90
8.1
B_CELL_NAIVE_91
7.2
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