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A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
66.7
Sample id
Sample description
nTPM
Amygdala nTPM: 64.5
2514
Male, age 75, right hemisphere
90.4
1987
Female, age 91, left hemisphere
88.5
2517
Female, age 94, left hemisphere
62.2
2814
Male, age 76, right hemisphere
50.2
2695
Female, age 67, right hemisphere
31.2
Basal amygdala nTPM: 56.9
2243
Female, age 91, right hemisphere
77.1
2609
Male, age 75, right hemisphere
69.3
2685
Female, age 94, left hemisphere
60.8
2110
Male, age 80, left hemisphere
57.4
1955
Male, age 76, both hemispheres
53.6
2827
Female, age 67, right hemisphere
23.4
Central amygdala nTPM: 53.8
2701
Female, age 91, right hemisphere
66.2
2239
Male, age 80, left hemisphere
64.7
2515
Male, age 75, right hemisphere
54.8
2826
Female, age 94, left hemisphere
42.4
1905
Male, age 76, both hemispheres
41.0
Corticomedial amygdala nTPM: 66.7
2242
Female, age 91, right hemisphere
91.0
2429
Female, age 94, left hemisphere
84.9
2428
Male, age 75, right hemisphere
66.0
2829
Male, age 80, left hemisphere
65.6
2240
Male, age 76, both hemispheres
55.5
2535
Female, age 67, right hemisphere
37.3
Lateral amygdala nTPM: 48.1
2255
Female, age 91, right hemisphere
63.6
2516
Male, age 75, right hemisphere
56.2
1883
Male, age 76, both hemispheres
53.8
2256
Male, age 80, left hemisphere
50.1
2534
Female, age 94, left hemisphere
48.8
2830
Female, age 67, right hemisphere
16.3
AMYGDALA - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
84.9
GTEx sample id
Sample description
nTPM
Brain - Amygdala Average nTPM: 84.9
Samples: 181
Max nTPM: 207.9
Min nTPM: 21.4
Std nTPM: 31.0
Median nTPM: 80.5
GTEX-15RJE-0011-R4a-SM-H7OH4
40-49 years, male
207.9
GTEX-17HG3-0011-R4a-SM-7IGLL
30-39 years, female
188.4
GTEX-1F75A-0011-R4a-SM-ARL8J
50-59 years, male
182.8
GTEX-14JG1-0011-R4b-SM-62LEB
40-49 years, male
182.0
GTEX-11ZU8-0011-R4a-SM-5BC6Y
60-69 years, male
164.0
GTEX-TSE9-0011-R4A-SM-3DB7H
60-69 years, female
155.2
GTEX-13OVJ-0011-R4b-SM-5P9H5
50-59 years, female
149.1
GTEX-13FLV-0011-R4a-SM-5LZYU
50-59 years, male
143.5
GTEX-11NUK-0011-R4a-SM-DO12B
50-59 years, male
143.3
GTEX-1GTWX-0011-R4a-SM-C1YQI
60-69 years, male
139.0
GTEX-13NYB-0011-R4b-SM-9QEGJ
40-49 years, male
137.3
GTEX-1PIIG-0011-R4a-SM-F2TAQ
30-39 years, male
135.2
GTEX-1P4AB-0011-R4b-SM-F2T9S
50-59 years, male
134.7
GTEX-1KWVE-0011-R4a-SM-F3K5X
30-39 years, male
131.9
GTEX-14BMV-0011-R4a-SM-H6Q7P
50-59 years, male
128.5
GTEX-14JIY-0011-R4b-SM-5ZZV7
60-69 years, male
128.0
GTEX-16YQH-0011-R4a-SM-7EPGI
30-39 years, male
126.8
GTEX-14JFF-0011-R4a-SM-5ZZV5
60-69 years, male
125.4
GTEX-1LVA9-0011-R4a-SM-F2TA2
50-59 years, male
121.3
GTEX-1H1ZS-0011-R4b-SM-CKZO7
70-79 years, male
120.4
GTEX-ZVZQ-0011-R4b-SM-57WCZ
60-69 years, female
115.9
GTEX-15DCD-0011-R4a-SM-69LPB
70-79 years, female
114.0
GTEX-11OF3-0011-R4a-SM-GJ3RB
60-69 years, male
113.6
GTEX-14E7W-0011-R4b-SM-62LEA
70-79 years, male
113.5
GTEX-1IY9M-0011-R4a-SM-C1YQ2
60-69 years, male
112.8
GTEX-11ONC-0011-R4b-SM-DO93H
60-69 years, male
112.6
GTEX-1LSVX-0011-R4b-SM-EXURP
60-69 years, male
111.4
GTEX-1ICLZ-0011-R4a-SM-CMKHL
60-69 years, male
111.2
GTEX-139T8-0011-R4a-SM-5HL54
60-69 years, male
110.7
GTEX-13FHO-0011-R4b-SM-H6611
60-69 years, male
110.2
GTEX-15SHU-0011-R4b-SM-7IGLC
40-49 years, female
109.4
GTEX-15DYW-0011-R4a-SM-6M46V
60-69 years, female
109.2
GTEX-1O9I2-0011-R4b-SM-F3K4K
50-59 years, male
108.8
GTEX-13VXU-0011-R4b-SM-5O9CI
50-59 years, male
108.7
GTEX-1JMOU-0011-R4b-SM-EY5ZL
60-69 years, female
107.9
GTEX-S7SE-0011-R4A-SM-2XCDB
50-59 years, male
107.3
GTEX-1F6IF-0011-R4b-SM-CKZNJ
60-69 years, male
107.1
GTEX-15ER7-0011-R4a-SM-6M46S
20-29 years, female
106.9
GTEX-13SLX-0011-R4a-SM-5O9BJ
50-59 years, female
106.8
GTEX-1JMQJ-0011-R4b-SM-EXUT8
50-59 years, male
106.0
GTEX-1PWST-0011-R4a-SM-F2T9X
70-79 years, male
105.2
GTEX-WVLH-0011-R4A-SM-3MJFS
50-59 years, male
105.1
GTEX-1H3O1-0011-R4b-SM-A9SKE
60-69 years, male
104.2
GTEX-14ABY-0011-R4b-SM-5S2VN
50-59 years, male
103.4
GTEX-12WSC-0011-R4a-SM-H6Q8M
50-59 years, male
102.7
GTEX-WZTO-0011-R4A-SM-3NMC7
40-49 years, male
102.4
GTEX-1GMR8-0011-R4a-SM-9OSX1
50-59 years, female
101.6
GTEX-1LVAO-0011-R4a-SM-EXURO
60-69 years, male
100.3
GTEX-13OW7-0011-R4b-SM-5O9CX
50-59 years, male
100.1
GTEX-1RQEC-0011-R4b-SM-F342C
60-69 years, male
100.0
GTEX-1OJC4-0011-R4a-SM-F3K54
50-59 years, female
99.7
GTEX-13OW8-0011-R4a-SM-9WG6V
60-69 years, male
99.5
GTEX-11DXY-0011-R4b-SM-GI4VR
60-69 years, male
99.2
GTEX-1LB8K-0011-R4b-SM-F6487
50-59 years, male
99.2
GTEX-1JN1M-0011-R4b-SM-F6494
60-69 years, female
97.6
GTEX-111FC-0011-R4a-SM-GIN8K
60-69 years, male
97.3
GTEX-17EVP-0011-R4a-SM-79OML
40-49 years, male
97.2
GTEX-1HBPI-0011-R4a-SM-CJI3K
50-59 years, male
95.1
GTEX-13CZV-0011-R4b-SM-5J2NY
60-69 years, male
94.6
GTEX-1N2EF-0011-R4a-SM-F341F
60-69 years, male
94.1
GTEX-YFC4-0011-R4a-SM-4RGLQ
40-49 years, female
93.5
GTEX-11GS4-0011-R4a-SM-GJ3RJ
60-69 years, male
92.9
GTEX-11ZVC-0011-R4a-SM-5BC6Z
50-59 years, female
92.3
GTEX-1EMGI-0011-R4b-SM-CJI2D
60-69 years, male
92.2
GTEX-1B8L1-0011-R4a-SM-7EWFJ
60-69 years, male
91.4
GTEX-12ZZY-0011-R4a-SM-GIN9F
60-69 years, male
91.2
GTEX-13QIC-0011-R4a-SM-5PNX8
60-69 years, female
90.9
GTEX-14PN4-0011-R4a-SM-686ZT
50-59 years, male
90.6
GTEX-Q2AG-0011-R4A-SM-2HMKA
40-49 years, female
90.1
GTEX-12WSD-0011-R4b-SM-5LZUA
60-69 years, female
89.7
GTEX-1RDX4-0011-R4b-SM-F3K43
50-59 years, female
89.7
GTEX-14C5O-0011-R4b-SM-G9ERF
60-69 years, male
89.2
GTEX-131YS-0011-R4a-SM-5DUVL
60-69 years, female
89.0
GTEX-QVUS-0011-R4A-SM-3GAE7
60-69 years, female
88.4
GTEX-14PQA-0011-R4b-SM-6AJBU
50-59 years, female
88.1
GTEX-1GN73-0011-R4b-SM-9QEIK
60-69 years, male
87.4
GTEX-QVJO-0011-R4A-SM-2S1QL
60-69 years, female
87.1
GTEX-147F4-0011-R4b-SM-GJ3R4
50-59 years, male
86.5
GTEX-13N1W-0011-R4a-SM-5MR52
70-79 years, male
85.8
GTEX-1EX96-0011-R4a-SM-ARU82
50-59 years, male
85.4
GTEX-1399T-0011-R4b-SM-5DUVX
60-69 years, male
84.6
GTEX-1HCU6-0011-R4b-SM-ARU74
60-69 years, female
84.2
GTEX-11PRG-0011-R4a-SM-DNZZR
50-59 years, male
83.7
GTEX-1AX9I-0011-R4b-SM-7EPIB
60-69 years, male
83.0
GTEX-1313W-0011-R4b-SM-5KLZV
50-59 years, female
82.4
GTEX-13RTJ-0011-R4b-SM-5PNX1
60-69 years, male
82.4
GTEX-NL4W-0011-R4a-SM-2I5GZ
50-59 years, male
82.2
GTEX-1CB4G-0011-R4b-SM-CJI28
60-69 years, male
81.6
GTEX-1HB9E-0011-R4b-SM-ARZLS
50-59 years, male
80.9
GTEX-11NV4-0011-R4a-SM-GI4XC
60-69 years, male
80.6
GTEX-1A3MX-0011-R4b-SM-7EWFK
60-69 years, male
80.5
GTEX-1J1OQ-0011-R4a-SM-D4P2A
40-49 years, female
80.2
GTEX-XLM4-0011-R4B-SM-4AT5C
60-69 years, male
80.2
GTEX-11TTK-0011-R4a-SM-DNZZU
60-69 years, female
80.1
GTEX-15EO6-0011-R4a-SM-7KUKZ
50-59 years, male
80.0
GTEX-13PVQ-0011-R4a-SM-5O9CT
50-59 years, male
79.6
GTEX-11GSO-0011-R4b-SM-GJ3R8
60-69 years, male
78.8
GTEX-13N2G-0011-R4b-SM-5MR54
60-69 years, male
78.7
GTEX-13112-0011-R4b-SM-5DUXL
50-59 years, male
78.5
GTEX-1LH75-0011-R4a-SM-F2TAM
50-59 years, female
78.2
GTEX-1J8EW-0011-R4b-SM-ARU89
60-69 years, female
77.9
GTEX-12ZZW-0011-R4a-SM-5DUX9
50-59 years, male
77.6
GTEX-13OW5-0011-R4b-SM-5L3HS
60-69 years, male
76.3
GTEX-13X6K-0011-R4b-SM-5P9HO
60-69 years, female
75.7
GTEX-14ASI-0011-R4a-SM-69LQ4
60-69 years, male
74.8
GTEX-13OVL-0011-R4b-SM-5L3HV
50-59 years, male
74.5
GTEX-1POEN-0011-R4b-SM-F3K4O
30-39 years, female
74.3
GTEX-117XS-0011-R4b-SM-GJ3PR
60-69 years, male
74.2
GTEX-1N2EE-0011-R4a-SM-EXOII
60-69 years, male
74.2
GTEX-1JMLX-0011-R4a-SM-EY5YJ
50-59 years, male
73.3
GTEX-1J8Q2-0011-R4a-SM-ADEHA
60-69 years, male
73.1
GTEX-1117F-0011-R4b-SM-GI4VM
60-69 years, female
72.5
GTEX-145LS-0011-R4b-SM-5S2UT
60-69 years, female
72.4
GTEX-1F7RK-0011-R4b-SM-9QEI7
20-29 years, female
72.3
GTEX-13JVG-0011-R4a-SM-5MR4C
60-69 years, male
72.1
GTEX-13PLJ-0011-R4b-SM-GJ3R6
60-69 years, female
72.0
GTEX-147GR-0011-R4a-SM-5S2V2
60-69 years, male
71.9
GTEX-1JJ6O-0011-R4a-SM-EY5YM
60-69 years, male
70.5
GTEX-1PPGY-0011-R4a-SM-F3K4F
60-69 years, male
70.1
GTEX-131XH-0011-R4b-SM-5DUWB
50-59 years, male
69.2
GTEX-1I1GR-0011-R4a-SM-CMKHC
60-69 years, male
68.9
GTEX-RNOR-0011-R4A-SM-3GAD3
50-59 years, female
68.8
GTEX-ZYY3-0011-R4a-SM-GQ1CY
60-69 years, female
68.6
GTEX-NPJ8-0011-R4a-SM-2HML3
40-49 years, male
68.3
GTEX-13O3O-0011-R4b-SM-5KM3F
60-69 years, female
68.2
GTEX-1QP6S-0011-R4b-SM-F33ZY
40-49 years, male
68.1
GTEX-13O3Q-0011-R4a-SM-5P9H2
50-59 years, male
67.2
GTEX-1C6WA-0011-R4a-SM-9QEH2
60-69 years, male
66.9
GTEX-NPJ7-0011-R4a-SM-2I3GJ
60-69 years, female
66.9
GTEX-1JMQK-0011-R4a-SM-G8LLQ
60-69 years, male
66.8
GTEX-ZAK1-0011-R4a-SM-6AJBK
50-59 years, female
66.2
GTEX-13QJC-0011-R4a-SM-H65ZP
60-69 years, female
66.1
GTEX-1E1VI-0011-R4b-SM-9QEHV
50-59 years, male
66.0
GTEX-14PJM-0011-R4a-SM-5YYAS
50-59 years, female
65.7
GTEX-12WSF-0011-R4b-SM-5HL88
70-79 years, male
64.9
GTEX-13X6J-0011-R4b-SM-5P9K4
50-59 years, male
63.6
GTEX-1H3NZ-0011-R4a-SM-CL54T
60-69 years, male
63.0
GTEX-11DYG-0011-R4b-SM-GJ3RG
60-69 years, male
62.5
GTEX-1HBPH-0011-R4a-SM-A96RX
40-49 years, female
62.0
GTEX-12WSH-0011-R4a-SM-5GU6K
50-59 years, male
61.5
GTEX-1LKK1-0011-R4b-SM-EY5YA
50-59 years, female
61.5
GTEX-1N2DW-0011-R4b-SM-EZ6MD
50-59 years, male
61.1
GTEX-17F97-0011-R4b-SM-7KFS2
50-59 years, male
59.6
GTEX-1F48J-0011-R4b-SM-9OSVX
50-59 years, female
59.5
GTEX-PVOW-0011-R4A-SM-H6Q8O
40-49 years, male
58.8
GTEX-1H23P-0011-R4b-SM-CL54R
60-69 years, male
58.7
GTEX-1HFI6-0011-R4b-SM-A96RT
40-49 years, male
58.3
GTEX-ZZPT-0011-R4a-SM-GPRX4
50-59 years, male
56.9
GTEX-1GF9W-0011-R4a-SM-CE6RH
60-69 years, male
56.7
GTEX-1GZ4I-0011-R4a-SM-9QEI9
50-59 years, male
56.6
GTEX-145LU-0011-R4b-SM-5P9K1
50-59 years, male
56.3
GTEX-1C6VR-0011-R4b-SM-9QEGZ
60-69 years, male
55.6
GTEX-N7MT-0011-R4a-SM-2I3G9
60-69 years, female
55.3
GTEX-WHSE-0011-R4A-SM-3P5ZN
20-29 years, male
54.6
GTEX-14BIM-0011-R4b-SM-5S2RK
60-69 years, female
54.2
GTEX-1445S-0011-R4a-SM-5PNWN
60-69 years, male
53.7
GTEX-1QMI2-0011-R4b-SM-F3K4R
60-69 years, male
53.6
GTEX-1H1CY-0011-R4b-SM-CJI3G
60-69 years, female
53.5
GTEX-1B996-0011-R4b-SM-9OSVO
60-69 years, male
53.3
GTEX-OHPN-0011-R4A-SM-2I5FD
60-69 years, female
52.6
GTEX-13SLW-0011-R4b-SM-5S2W2
70-79 years, male
52.4
GTEX-13OW6-0011-R4a-SM-5O9DX
50-59 years, male
51.9
GTEX-11ZTS-0011-R4b-SM-GINAQ
60-69 years, female
51.8
GTEX-ZAB4-0011-R4a-SM-4SOKB
40-49 years, male
51.7
GTEX-13OVH-0011-R4a-SM-5KM3W
70-79 years, male
49.6
GTEX-1H1DG-0011-R4a-SM-CE6RQ
70-79 years, male
47.6
GTEX-1RLM8-0011-R4a-SM-F2TBL
50-59 years, male
46.3
GTEX-15CHQ-0011-R4a-SM-686ZX
60-69 years, male
45.9
GTEX-1MJK2-0011-R4a-SM-F3426
50-59 years, male
45.3
GTEX-1R46S-0011-R4b-SM-F2TBF
60-69 years, female
44.1
GTEX-13X6I-0011-R4b-SM-5PNU9
60-69 years, male
43.2
GTEX-17EVQ-0011-R4b-SM-7LT94
70-79 years, male
41.6
GTEX-13NYS-0011-R4b-SM-5MR3O
60-69 years, male
40.6
GTEX-1NV8Z-0011-R4b-SM-G8LMZ
60-69 years, male
40.3
GTEX-12WSA-0011-R4a-SM-57WB7
60-69 years, male
39.9
GTEX-14DAQ-0011-R4a-SM-5YYAI
60-69 years, female
39.3
GTEX-12ZZZ-0011-R4b-SM-5DUV7
60-69 years, male
38.8
GTEX-1RQED-0011-R4b-SM-F2I2X
60-69 years, male
38.0
GTEX-144GL-0011-R4a-SM-5PNUI
50-59 years, male
35.5
GTEX-X585-0011-R4B-SM-46MVH
50-59 years, male
23.1
GTEX-X4XX-0011-R4B-SM-46MWL
60-69 years, male
21.4
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AMYGDALA - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
76.4
Pig sample
Sample description
nTPM
Amygdala nTPM: 76.4
Samples: 4
Max nTPM: 87.5
Min nTPM: 64.1
Sample A
Female
87.5
Sample B
Female
64.1
Sample C
Male
73.5
Sample D
Male
80.6
AMYGDALA - Mouse RNA-seqi
RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
262.5
Mouse sample
Sample description
nTPM
Amygdala nTPM: 262.5
Samples: 4
Max nTPM: 311.6
Min nTPM: 230.5
Sample A
Male
230.5
Sample B
Male
247.1
Sample C
Female
311.6
Sample D
Female
260.8
AMYGDALA - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.
The Human Protein Atlas project is funded
