BETA
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:344.1 nTPM
HPA Brain:922.0 nTPM
GTEx:344.1 nTPM
FANTOM5:1146.1 Scaled Tags Per Million
Macaque:214.4 nTPM
Mouse:127.5 nTPM
Rat:90.4 nTPM
Pig:203.4 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 922.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 617.1
2019 Male, age 18, unknown 799.5
1830 Male, age 51, unknown 780.1
1833 Male, age 53, unknown 713.0
1870 Female, age 42, unknown 667.7
2411 Female, age 72, unknown 653.9
2828 Female, age 72, unknown 606.5
2666 Male, age 74, left hemisphere 604.1
2586 Male, age 75, left hemisphere 579.4
1827 Male, age 72, unknown 408.9
2219 Male, age 76, both hemispheres 357.7
Dorsal raphe nucleus
nTPM: 446.8
2750 Male, age 76, both hemispheres 860.4
2016 Female, age 72, unknown 406.6
1828 Male, age 53, unknown 397.6
2047 Male, age 72, unknown 312.1
2298 Female, age 72, unknown 257.2
Inferior colliculus
nTPM: 366.2
1890 Male, age 53, unknown 411.4
2849 Male, age 72, unknown 400.8
1848 Female, age 42, unknown 393.8
2097 Female, age 72, unknown 258.6
Median raphe nucleus
nTPM: 488.5
2220 Male, age 76, midline 488.5
Periaquaductal grey, anterior
nTPM: 359.7
2502 Female, age 75, unknown 456.7
1947 Male, age 18, unknown 324.4
1795 Male, age 51, unknown 298.1
Periaquaductal grey, dorsal
nTPM: 286.6
2464 Female, age 72, unknown 414.4
1831 Male, age 72, unknown 304.4
2850 Male, age 76, both hemispheres 224.2
1840 Male, age 53, unknown 203.5
Periaquaductal grey, lateral
nTPM: 308.6
2272 Male, age 74, both hemispheres 400.5
2053 Male, age 18, unknown 318.6
2140 Male, age 76, both hemispheres 206.9
Pretectal area
nTPM: 414.7
1815 Male, age 53, unknown 580.3
2007 Male, age 72, unknown 565.6
1817 Female, age 42, unknown 531.1
2316 Male, age 76, right hemisphere 495.2
2407 Male, age 75, both hemispheres 452.9
2825 Male, age 18, unknown 383.7
1944 Female, age 72, unknown 330.9
1816 Male, age 51, unknown 322.5
2667 Female, age 75, unknown 318.0
2273 Male, age 74, both hemispheres 298.3
2224 Female, age 72, unknown 283.6
Red nucleus
nTPM: 922.0
2823 Male, age 76, right hemisphere 1135.9
1865 Male, age 51, unknown 1049.0
1904 Male, age 53, unknown 1034.1
2785 Male, age 18, unknown 1010.6
2769 Male, age 72, unknown 970.5
2588 Male, age 74, left hemisphere 952.0
2503 Female, age 72, unknown 937.1
1821 Female, age 72, unknown 925.2
2227 Male, age 72, unknown 911.9
1954 Female, age 42, unknown 782.6
2584 Male, age 75, left hemisphere 692.7
2725 Female, age 75, unknown 662.5
Substantia nigra
nTPM: 471.2
2590 Female, age 75, unknown 600.8
1889 Female, age 72, unknown 573.2
1851 Male, age 51, unknown 526.4
2583 Male, age 75, right hemisphere 524.0
2409 Female, age 72, unknown 502.2
2699 Male, age 18, unknown 462.9
2665 Male, age 74, both hemispheres 431.9
1941 Male, age 53, unknown 381.9
1916 Female, age 42, unknown 368.6
2241 Male, age 72, unknown 340.0
Superior colliculus
nTPM: 490.5
1913 Female, age 42, unknown 675.3
1995 Male, age 72, unknown 672.1
2587 Male, age 74, left hemisphere 572.9
1895 Male, age 76, right hemisphere 505.7
1839 Male, age 51, unknown 504.1
2668 Female, age 75, unknown 493.9
1796 Male, age 53, unknown 408.9
2087 Female, age 72, unknown 370.7
2664 Male, age 75, both hemispheres 357.4
2261 Male, age 18, unknown 343.7
Ventral tegmental area
nTPM: 542.6
2223 Female, age 72, unknown 769.4
2410 Female, age 72, unknown 688.5
2218 Male, age 76, both hemispheres 506.6
2021 Male, age 53, unknown 462.3
1942 Male, age 51, unknown 431.5
1915 Female, age 42, unknown 397.4

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 344.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 344.1
Samples: 183

Max nTPM: 911.2
Min nTPM: 39.5
Std nTPM: 155.3
Median nTPM: 317.1
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 911.2
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 764.2
GTEX-1117F-0011-R2b-SM-GI4VL 60-69 years, female 735.5
GTEX-1I19N-0011-R2b-SM-GPRYG 70-79 years, male 721.7
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 713.7
GTEX-1PWST-0011-R2b-SM-F3K5I 70-79 years, male 707.9
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 683.6
GTEX-1LKK1-0011-R2b-SM-G8OLT 50-59 years, female 667.2
GTEX-1NV5F-0011-R2a-SM-G8LME 60-69 years, female 665.4
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 650.5
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 622.5
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 1146.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 1146.1
FF:10158-103A5 76 years, female 1146.1

MIDBRAIN - Macaque RNA-seq
Max subtype nTPMi 214.4
Macaque sample Sample description nTPM
Substantia nigra
nTPM: 214.4
Samples: 1

Max nTPM: 214.4
Min nTPM: 214.4
Sample A 214.4
Midbrain
nTPM: 118.6
Samples: 1

Max nTPM: 118.6
Min nTPM: 118.6
Sample A 118.6
Superior colliculi
nTPM: 182.0
Samples: 1

Max nTPM: 182.0
Min nTPM: 182.0
Sample A 182.0

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 203.4
Pig sample Sample description nTPM
Substantia nigra
nTPM: 202.2
Samples: 3

Max nTPM: 251.7
Min nTPM: 173.3
Sample A Female 251.7
Sample B Female 181.6
Sample C Male 173.3
Midbrain
nTPM: 143.1
Samples: 3

Max nTPM: 194.5
Min nTPM: 110.2
Sample B Female 194.5
Sample C Male 124.7
Sample D Male 110.2
Periaqueductal gray
nTPM: 145.7
Samples: 3

Max nTPM: 175.3
Min nTPM: 120.4
Sample B Female 175.3
Sample C Male 120.4
Sample D Male 141.3
Superior colliculi
nTPM: 203.4
Samples: 4

Max nTPM: 244.5
Min nTPM: 183.6
Sample A Female 244.5
Sample B Female 190.4
Sample C Male 183.6
Sample D Male 195.1

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 127.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 127.6
Samples: 4

Max nTPM: 132.4
Min nTPM: 124.3
Sample A 127.5
Sample B 132.4
Sample C 126.0
Sample D 124.3

MIDBRAIN - Rat RNA-seq
Max subtype nTPMi 90.4
Rat sample Sample description nTPM
Midbrain
nTPM: 90.4
Samples: 4

Max nTPM: 94.6
Min nTPM: 82.6
Sample A 94.6
Sample A 90.1
Sample A 82.6
Sample A 94.4

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