BETA
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:195.5 nTPM
HPA Brain:163.6 nTPM
GTEx:195.5 nTPM
FANTOM5:115.3 Scaled Tags Per Million
Macaque:93.7 nTPM
Mouse:73.0 nTPM
Rat:70.0 nTPM
Pig:99.4 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 163.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 148.0
2586 Male, age 75, left hemisphere 183.8
2666 Male, age 74, left hemisphere 169.4
2019 Male, age 18, unknown 159.4
1870 Female, age 42, unknown 153.3
2828 Female, age 72, unknown 151.5
1827 Male, age 72, unknown 150.7
2411 Female, age 72, unknown 150.7
1833 Male, age 53, unknown 125.7
1830 Male, age 51, unknown 124.1
2219 Male, age 76, both hemispheres 111.8
Dorsal raphe nucleus
nTPM: 159.7
2016 Female, age 72, unknown 192.8
2298 Female, age 72, unknown 170.5
2047 Male, age 72, unknown 152.0
1828 Male, age 53, unknown 145.1
2750 Male, age 76, both hemispheres 138.0
Inferior colliculus
nTPM: 141.3
1890 Male, age 53, unknown 157.5
2097 Female, age 72, unknown 156.2
1848 Female, age 42, unknown 135.3
2849 Male, age 72, unknown 116.3
Median raphe nucleus
nTPM: 129.0
2220 Male, age 76, midline 129.0
Periaquaductal grey, anterior
nTPM: 155.8
2502 Female, age 75, unknown 165.7
1947 Male, age 18, unknown 159.2
1795 Male, age 51, unknown 142.7
Periaquaductal grey, dorsal
nTPM: 154.2
2850 Male, age 76, both hemispheres 177.4
1840 Male, age 53, unknown 159.5
2464 Female, age 72, unknown 144.2
1831 Male, age 72, unknown 135.7
Periaquaductal grey, lateral
nTPM: 138.0
2140 Male, age 76, both hemispheres 159.5
2053 Male, age 18, unknown 147.1
2272 Male, age 74, both hemispheres 107.5
Pretectal area
nTPM: 157.6
1816 Male, age 51, unknown 191.3
2007 Male, age 72, unknown 190.6
1815 Male, age 53, unknown 182.3
1817 Female, age 42, unknown 176.7
1944 Female, age 72, unknown 170.2
2316 Male, age 76, right hemisphere 159.9
2224 Female, age 72, unknown 144.6
2273 Male, age 74, both hemispheres 133.3
2825 Male, age 18, unknown 132.0
2667 Female, age 75, unknown 126.8
2407 Male, age 75, both hemispheres 126.2
Red nucleus
nTPM: 148.1
1821 Female, age 72, unknown 179.8
2503 Female, age 72, unknown 172.0
1865 Male, age 51, unknown 153.6
2725 Female, age 75, unknown 151.8
1904 Male, age 53, unknown 150.8
2785 Male, age 18, unknown 149.4
2588 Male, age 74, left hemisphere 145.0
2584 Male, age 75, left hemisphere 143.5
1954 Female, age 42, unknown 138.6
2769 Male, age 72, unknown 137.3
2227 Male, age 72, unknown 134.1
2823 Male, age 76, right hemisphere 120.7
Substantia nigra
nTPM: 163.6
2241 Male, age 72, unknown 187.6
1851 Male, age 51, unknown 184.4
1916 Female, age 42, unknown 167.9
2590 Female, age 75, unknown 166.3
1889 Female, age 72, unknown 164.7
2583 Male, age 75, right hemisphere 162.5
2699 Male, age 18, unknown 155.6
1941 Male, age 53, unknown 152.2
2665 Male, age 74, both hemispheres 148.4
2409 Female, age 72, unknown 146.4
Superior colliculus
nTPM: 152.3
1995 Male, age 72, unknown 175.3
2668 Female, age 75, unknown 166.3
1913 Female, age 42, unknown 163.2
2664 Male, age 75, both hemispheres 154.6
2087 Female, age 72, unknown 154.1
2261 Male, age 18, unknown 153.7
2587 Male, age 74, left hemisphere 151.0
1796 Male, age 53, unknown 147.3
1839 Male, age 51, unknown 133.6
1895 Male, age 76, right hemisphere 124.5
Ventral tegmental area
nTPM: 149.4
1915 Female, age 42, unknown 161.6
2410 Female, age 72, unknown 160.2
1942 Male, age 51, unknown 150.2
2021 Male, age 53, unknown 149.6
2223 Female, age 72, unknown 143.6
2218 Male, age 76, both hemispheres 131.2

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 195.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 195.5
Samples: 183

Max nTPM: 332.8
Min nTPM: 89.1
Std nTPM: 46.1
Median nTPM: 186.2
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 332.8
GTEX-1117F-0011-R2b-SM-GI4VL 60-69 years, female 332.0
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 317.0
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 311.6
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 300.3
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 293.5
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 293.1
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 291.4
GTEX-1192X-0011-R2b-SM-GI4VV 50-59 years, male 286.9
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 286.6
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 285.8
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 115.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 115.3
FF:10158-103A5 76 years, female 115.3

MIDBRAIN - Macaque RNA-seq
Max subtype nTPMi 93.7
Macaque sample Sample description nTPM
Substantia nigra
nTPM: 93.7
Samples: 1

Max nTPM: 93.7
Min nTPM: 93.7
Sample A 93.7
Midbrain
nTPM: 82.3
Samples: 1

Max nTPM: 82.3
Min nTPM: 82.3
Sample A 82.3
Superior colliculi
nTPM: 88.8
Samples: 1

Max nTPM: 88.8
Min nTPM: 88.8
Sample A 88.8

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 99.4
Pig sample Sample description nTPM
Substantia nigra
nTPM: 95.3
Samples: 3

Max nTPM: 115.7
Min nTPM: 78.6
Sample A Female 115.7
Sample B Female 78.6
Sample C Male 91.6
Midbrain
nTPM: 99.4
Samples: 3

Max nTPM: 110.5
Min nTPM: 92.7
Sample B Female 95.0
Sample C Male 110.5
Sample D Male 92.7
Periaqueductal gray
nTPM: 82.1
Samples: 3

Max nTPM: 84.9
Min nTPM: 76.8
Sample B Female 84.5
Sample C Male 84.9
Sample D Male 76.8
Superior colliculi
nTPM: 96.7
Samples: 4

Max nTPM: 111.1
Min nTPM: 74.6
Sample A Female 111.1
Sample B Female 74.6
Sample C Male 107.9
Sample D Male 93.1

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 73.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 73.0
Samples: 4

Max nTPM: 75.8
Min nTPM: 69.0
Sample A 73.3
Sample B 69.0
Sample C 73.8
Sample D 75.8

MIDBRAIN - Rat RNA-seq
Max subtype nTPMi 70.0
Rat sample Sample description nTPM
Midbrain
nTPM: 70.1
Samples: 4

Max nTPM: 71.0
Min nTPM: 68.5
Sample A 70.4
Sample A 71.0
Sample A 70.3
Sample A 68.5

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