MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:171.3 nTPM
HPA Brain:288.3 nTPM
GTEx:171.3 nTPM
FANTOM5:31.1 Scaled Tags Per Million
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 288.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 212.9
2019 Male, age 18, unknown 728.6
2666 Male, age 74, left hemisphere 275.2
2219 Male, age 76, both hemispheres 237.4
2411 Female, age 72, unknown 163.5
2828 Female, age 72, unknown 131.5
1830 Male, age 51, unknown 129.9
1870 Female, age 42, unknown 126.6
1827 Male, age 72, unknown 112.3
2586 Male, age 75, left hemisphere 112.0
1833 Male, age 53, unknown 111.7
Dorsal raphe nucleus
nTPM: 217.8
1828 Male, age 53, unknown 540.4
2047 Male, age 72, unknown 262.6
2750 Male, age 76, both hemispheres 103.8
2298 Female, age 72, unknown 93.6
2016 Female, age 72, unknown 88.6
Inferior colliculus
nTPM: 133.5
1848 Female, age 42, unknown 169.8
1890 Male, age 53, unknown 131.5
2849 Male, age 72, unknown 120.0
2097 Female, age 72, unknown 112.6
Median raphe nucleus
nTPM: 111.7
2220 Male, age 76, midline 111.7
Periaquaductal grey, anterior
nTPM: 89.6
2502 Female, age 75, unknown 113.4
1795 Male, age 51, unknown 105.4
1947 Male, age 18, unknown 50.0
Periaquaductal grey, dorsal
nTPM: 96.1
2464 Female, age 72, unknown 131.0
1831 Male, age 72, unknown 123.5
2850 Male, age 76, both hemispheres 74.8
1840 Male, age 53, unknown 55.2
Periaquaductal grey, lateral
nTPM: 58.7
2272 Male, age 74, both hemispheres 75.5
2053 Male, age 18, unknown 53.6
2140 Male, age 76, both hemispheres 47.2
Pretectal area
nTPM: 260.6
1817 Female, age 42, unknown 612.8
1944 Female, age 72, unknown 579.6
2007 Male, age 72, unknown 434.6
1816 Male, age 51, unknown 388.7
2667 Female, age 75, unknown 233.1
1815 Male, age 53, unknown 222.7
2407 Male, age 75, both hemispheres 80.9
2224 Female, age 72, unknown 79.5
2825 Male, age 18, unknown 79.2
2273 Male, age 74, both hemispheres 78.7
2316 Male, age 76, right hemisphere 77.0
Red nucleus
nTPM: 288.3
2785 Male, age 18, unknown 478.3
1821 Female, age 72, unknown 408.3
2503 Female, age 72, unknown 384.1
1954 Female, age 42, unknown 366.1
1865 Male, age 51, unknown 335.9
2823 Male, age 76, right hemisphere 310.3
1904 Male, age 53, unknown 250.7
2588 Male, age 74, left hemisphere 245.1
2227 Male, age 72, unknown 213.9
2769 Male, age 72, unknown 207.5
2584 Male, age 75, left hemisphere 139.8
2725 Female, age 75, unknown 119.5
Substantia nigra
nTPM: 208.5
1941 Male, age 53, unknown 400.7
1889 Female, age 72, unknown 376.6
1916 Female, age 42, unknown 257.0
2665 Male, age 74, both hemispheres 248.3
2409 Female, age 72, unknown 184.8
1851 Male, age 51, unknown 179.3
2699 Male, age 18, unknown 147.9
2241 Male, age 72, unknown 138.5
2583 Male, age 75, right hemisphere 81.2
2590 Female, age 75, unknown 70.9
Superior colliculus
nTPM: 187.4
2668 Female, age 75, unknown 511.8
2087 Female, age 72, unknown 366.5
1895 Male, age 76, right hemisphere 261.3
1913 Female, age 42, unknown 148.7
1839 Male, age 51, unknown 111.3
1995 Male, age 72, unknown 106.1
2261 Male, age 18, unknown 103.3
1796 Male, age 53, unknown 96.7
2664 Male, age 75, both hemispheres 87.6
2587 Male, age 74, left hemisphere 81.0
Ventral tegmental area
nTPM: 172.3
2410 Female, age 72, unknown 296.2
2223 Female, age 72, unknown 225.2
2218 Male, age 76, both hemispheres 195.9
1915 Female, age 42, unknown 156.7
1942 Male, age 51, unknown 85.4
2021 Male, age 53, unknown 74.3

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 171.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 171.3
Samples: 183

Max nTPM: 2356.6
Min nTPM: 2.9
Std nTPM: 258.3
Median nTPM: 82.9
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 2356.6
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 1575.5
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 970.0
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 715.1
GTEX-1HFI6-0011-R2a-SM-CMKH5 40-49 years, male 675.8
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 663.7
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 581.0
GTEX-RU72-0011-R2A-SM-2TF6O 50-59 years, female 519.3
GTEX-11NUK-0011-R2a-SM-GINAO 50-59 years, male 512.8
GTEX-14C5O-0011-R2a-SM-5ZZV2 60-69 years, male 512.8
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 505.2
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 31.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 31.1
FF:10158-103A5 76 years, female 31.1

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