BETA
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:171.3 nTPM
HPA Brain:289.9 nTPM
GTEx:171.3 nTPM
FANTOM5:31.1 Scaled Tags Per Million
Rat:185.7 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 289.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 214.1
2019 Male, age 18, unknown 732.5
2666 Male, age 74, left hemisphere 276.5
2219 Male, age 76, both hemispheres 241.6
2411 Female, age 72, unknown 164.0
2828 Female, age 72, unknown 132.3
1830 Male, age 51, unknown 130.5
1870 Female, age 42, unknown 127.2
1827 Male, age 72, unknown 112.9
1833 Male, age 53, unknown 112.4
2586 Male, age 75, left hemisphere 111.1
Dorsal raphe nucleus
nTPM: 219.3
1828 Male, age 53, unknown 543.6
2047 Male, age 72, unknown 264.0
2750 Male, age 76, both hemispheres 105.7
2298 Female, age 72, unknown 93.9
2016 Female, age 72, unknown 89.1
Inferior colliculus
nTPM: 134.2
1848 Female, age 42, unknown 170.7
1890 Male, age 53, unknown 132.3
2849 Male, age 72, unknown 120.7
2097 Female, age 72, unknown 112.9
Median raphe nucleus
nTPM: 113.6
2220 Male, age 76, midline 113.6
Periaquaductal grey, anterior
nTPM: 90.1
2502 Female, age 75, unknown 114.0
1795 Male, age 51, unknown 106.0
1947 Male, age 18, unknown 50.3
Periaquaductal grey, dorsal
nTPM: 96.8
2464 Female, age 72, unknown 131.4
1831 Male, age 72, unknown 124.2
2850 Male, age 76, both hemispheres 76.2
1840 Male, age 53, unknown 55.5
Periaquaductal grey, lateral
nTPM: 59.3
2272 Male, age 74, both hemispheres 75.9
2053 Male, age 18, unknown 53.9
2140 Male, age 76, both hemispheres 48.1
Pretectal area
nTPM: 262.0
1817 Female, age 42, unknown 615.9
1944 Female, age 72, unknown 582.7
2007 Male, age 72, unknown 437.2
1816 Male, age 51, unknown 390.5
2667 Female, age 75, unknown 234.2
1815 Male, age 53, unknown 223.9
2407 Male, age 75, both hemispheres 80.3
2224 Female, age 72, unknown 79.7
2825 Male, age 18, unknown 79.7
2273 Male, age 74, both hemispheres 79.1
2316 Male, age 76, right hemisphere 78.4
Red nucleus
nTPM: 289.9
2785 Male, age 18, unknown 481.1
1821 Female, age 72, unknown 410.5
2503 Female, age 72, unknown 385.1
1954 Female, age 42, unknown 368.0
1865 Male, age 51, unknown 337.7
2823 Male, age 76, right hemisphere 315.9
1904 Male, age 53, unknown 252.3
2588 Male, age 74, left hemisphere 246.2
2227 Male, age 72, unknown 215.0
2769 Male, age 72, unknown 208.7
2584 Male, age 75, left hemisphere 138.7
2725 Female, age 75, unknown 120.1
Substantia nigra
nTPM: 209.5
1941 Male, age 53, unknown 402.9
1889 Female, age 72, unknown 378.8
1916 Female, age 42, unknown 258.5
2665 Male, age 74, both hemispheres 249.6
2409 Female, age 72, unknown 185.3
1851 Male, age 51, unknown 180.2
2699 Male, age 18, unknown 148.7
2241 Male, age 72, unknown 139.2
2583 Male, age 75, right hemisphere 80.5
2590 Female, age 75, unknown 71.2
Superior colliculus
nTPM: 188.6
2668 Female, age 75, unknown 514.5
2087 Female, age 72, unknown 368.5
1895 Male, age 76, right hemisphere 265.8
1913 Female, age 42, unknown 149.6
1839 Male, age 51, unknown 111.8
1995 Male, age 72, unknown 106.7
2261 Male, age 18, unknown 103.8
1796 Male, age 53, unknown 97.2
2664 Male, age 75, both hemispheres 87.0
2587 Male, age 74, left hemisphere 81.4
Ventral tegmental area
nTPM: 173.5
2410 Female, age 72, unknown 297.2
2223 Female, age 72, unknown 226.5
2218 Male, age 76, both hemispheres 199.3
1915 Female, age 42, unknown 157.5
1942 Male, age 51, unknown 85.8
2021 Male, age 53, unknown 74.7

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 171.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 171.3
Samples: 183

Max nTPM: 2356.6
Min nTPM: 2.9
Std nTPM: 258.3
Median nTPM: 82.9
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 2356.6
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 1575.5
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 970.0
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 715.1
GTEX-1HFI6-0011-R2a-SM-CMKH5 40-49 years, male 675.8
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 663.7
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 581.0
GTEX-RU72-0011-R2A-SM-2TF6O 50-59 years, female 519.3
GTEX-11NUK-0011-R2a-SM-GINAO 50-59 years, male 512.8
GTEX-14C5O-0011-R2a-SM-5ZZV2 60-69 years, male 512.8
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 505.2
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 31.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 31.1
FF:10158-103A5 76 years, female 31.1

MIDBRAIN - Rat RNA-seq
Max subtype nTPMi 185.7
Rat sample Sample description nTPM
Midbrain
nTPM: 185.7
Samples: 4

Max nTPM: 191.7
Min nTPM: 179.4
Sample A 185.8
Sample A 191.7
Sample A 179.4
Sample A 185.8

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