MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:123.3 nTPM
HPA Brain:46.5 nTPM
GTEx:123.3 nTPM
FANTOM5:113.2 Scaled Tags Per Million
Pig:86.0 nTPM
Mouse:57.3 nTPM
Allen mouse:0.3 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 46.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 36.6
2019 Male, age 18, unknown 56.9
1870 Female, age 42, unknown 40.6
1827 Male, age 72, unknown 40.1
2828 Female, age 72, unknown 36.1
2411 Female, age 72, unknown 35.2
1833 Male, age 53, unknown 34.1
2666 Male, age 74, left hemisphere 32.6
1830 Male, age 51, unknown 32.1
2219 Male, age 76, both hemispheres 30.5
2586 Male, age 75, left hemisphere 28.0
Dorsal raphe nucleus
nTPM: 38.1
2298 Female, age 72, unknown 42.5
2750 Male, age 76, both hemispheres 42.1
2016 Female, age 72, unknown 35.3
2047 Male, age 72, unknown 35.3
1828 Male, age 53, unknown 35.1
Inferior colliculus
nTPM: 35.9
1890 Male, age 53, unknown 38.5
2097 Female, age 72, unknown 37.4
2849 Male, age 72, unknown 36.0
1848 Female, age 42, unknown 31.8
Median raphe nucleus
nTPM: 46.5
2220 Male, age 76, midline 46.5
Periaquaductal grey, anterior
nTPM: 32.1
1795 Male, age 51, unknown 34.7
2502 Female, age 75, unknown 31.2
1947 Male, age 18, unknown 30.5
Periaquaductal grey, dorsal
nTPM: 33.8
2850 Male, age 76, both hemispheres 40.5
1840 Male, age 53, unknown 32.4
2464 Female, age 72, unknown 32.4
1831 Male, age 72, unknown 30.0
Periaquaductal grey, lateral
nTPM: 28.5
2140 Male, age 76, both hemispheres 31.2
2272 Male, age 74, both hemispheres 28.7
2053 Male, age 18, unknown 25.7
Pretectal area
nTPM: 46.0
1817 Female, age 42, unknown 73.2
2007 Male, age 72, unknown 64.8
1944 Female, age 72, unknown 57.0
1815 Male, age 53, unknown 50.5
1816 Male, age 51, unknown 49.6
2224 Female, age 72, unknown 39.7
2667 Female, age 75, unknown 37.8
2407 Male, age 75, both hemispheres 36.3
2316 Male, age 76, right hemisphere 34.0
2273 Male, age 74, both hemispheres 33.9
2825 Male, age 18, unknown 29.5
Red nucleus
nTPM: 35.3
2785 Male, age 18, unknown 48.2
2725 Female, age 75, unknown 42.1
1865 Male, age 51, unknown 37.8
2823 Male, age 76, right hemisphere 36.8
2503 Female, age 72, unknown 34.6
2584 Male, age 75, left hemisphere 34.3
1821 Female, age 72, unknown 34.2
2588 Male, age 74, left hemisphere 32.4
1904 Male, age 53, unknown 31.0
2227 Male, age 72, unknown 30.8
2769 Male, age 72, unknown 30.8
1954 Female, age 42, unknown 30.2
Substantia nigra
nTPM: 39.5
1889 Female, age 72, unknown 54.7
1916 Female, age 42, unknown 47.5
1941 Male, age 53, unknown 44.8
1851 Male, age 51, unknown 41.0
2665 Male, age 74, both hemispheres 40.5
2583 Male, age 75, right hemisphere 38.5
2241 Male, age 72, unknown 33.6
2699 Male, age 18, unknown 33.0
2590 Female, age 75, unknown 31.5
2409 Female, age 72, unknown 29.5
Superior colliculus
nTPM: 34.8
2668 Female, age 75, unknown 42.4
1895 Male, age 76, right hemisphere 40.0
2087 Female, age 72, unknown 37.5
1995 Male, age 72, unknown 37.4
1796 Male, age 53, unknown 34.9
1913 Female, age 42, unknown 34.7
2261 Male, age 18, unknown 32.2
2587 Male, age 74, left hemisphere 31.7
1839 Male, age 51, unknown 28.8
2664 Male, age 75, both hemispheres 28.2
Ventral tegmental area
nTPM: 37.2
2218 Male, age 76, both hemispheres 44.0
2223 Female, age 72, unknown 41.2
1915 Female, age 42, unknown 38.1
1942 Male, age 51, unknown 35.7
2021 Male, age 53, unknown 34.2
2410 Female, age 72, unknown 30.0

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 123.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 123.3
Samples: 183

Max nTPM: 205.1
Min nTPM: 75.7
Std nTPM: 25.8
Median nTPM: 120.3
GTEX-1CB4J-0011-R2a-SM-9WG5N 60-69 years, male 205.1
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 204.7
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 203.2
GTEX-1LKK1-0011-R2b-SM-G8OLT 50-59 years, female 188.3
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 188.2
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 184.7
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 180.9
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 177.3
GTEX-15SHU-0011-R2a-SM-GPRXS 40-49 years, female 176.4
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 170.8
GTEX-QVJO-0011-R2A-SM-2S1QK 60-69 years, female 170.7
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 113.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 113.2
FF:10158-103A5 76 years, female 113.2

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 86.0
Pig sample Sample description nTPM
Substantia nigra
nTPM: 77.5
Samples: 4

Max nTPM: 96.0
Min nTPM: 59.7
Sample A Female 96.0
Sample B Female 66.0
Sample C Male 88.4
Sample D Male 59.7
Midbrain
nTPM: 80.4
Samples: 4

Max nTPM: 96.6
Min nTPM: 60.7
Sample A Female 95.2
Sample B Female 96.6
Sample C Male 68.9
Sample D Male 60.7
Periaqueductal gray
nTPM: 86.0
Samples: 3

Max nTPM: 101.0
Min nTPM: 75.8
Sample B Female 75.8
Sample C Male 101.0
Sample D Male 81.3
Superior colliculi
nTPM: 75.6
Samples: 4

Max nTPM: 100.1
Min nTPM: 56.6
Sample A Female 100.1
Sample B Female 56.6
Sample C Male 67.4
Sample D Male 78.4

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 57.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 57.2
Samples: 4

Max nTPM: 59.5
Min nTPM: 54.4
Sample A Male 54.4
Sample B Male 58.2
Sample C Female 59.5
Sample D Female 56.8

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.3
68844319 Antisense, RP_050222_01_D04, Mouse strain C57BL/6J (56 days, male) 0.3

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