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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Brain methods
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:87.2 nTPM
HPA Brain:187.4 nTPM
GTEx:87.2 nTPM
FANTOM5:210.8 Scaled Tags Per Million
Pig:234.3 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SPINAL CORD - Annotated protein expression
Pending normal tissue analysis

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

187.4
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 187.4
2565 Male, age 75, midline 257.8
2194 Female, age 79, both hemispheres 199.1
2816 Male, age 47, midline 175.8
1981 Female, age 72, midline 155.6
2048 Male, age 55, midline 149.0
Cervical spinal cord, dorsal horn
nTPM: 184.9
2721 Male, age 90, both hemispheres 211.5
1877 Male, age 55, unknown 190.0
2069 Male, age 47, both hemispheres 185.0
2296 Male, age 66, both hemispheres 184.9
2297 Male, age 75, both hemispheres 181.0
2173 Female, age 72, unknown 157.1
Cervical spinal cord, ventral horn
nTPM: 163.3
2820 Female, age 79, both hemispheres 198.2
2068 Male, age 55, unknown 193.1
2480 Male, age 75, both hemispheres 178.4
2295 Male, age 66, both hemispheres 153.2
2809 Male, age 90, both hemispheres 132.6
2098 Female, age 72, unknown 124.5

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

87.2
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 87.2
Samples: 204

Max nTPM: 175.1
Min nTPM: 46.4
Std nTPM: 20.8
Median nTPM: 84.3
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 175.1
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 169.7
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 151.0
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 142.3
GTEX-1J8Q2-0011-R9b-SM-GPRYH 60-69 years, male 140.2
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 135.3
GTEX-1KD4Q-0011-R9a-SM-G8LLU 40-49 years, male 133.8
GTEX-1R9PO-0011-R9a-SM-G8LKP 60-69 years, female 131.2
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 131.1
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 128.1
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 126.3
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 125.8
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 125.3
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 123.6
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 122.7
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 121.3
GTEX-1POEN-0011-R9b-SM-G8LL1 30-39 years, female 119.9
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 119.1
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 116.7
GTEX-113JC-0011-R9a-SM-H6Q8K 50-59 years, female 114.7
GTEX-1QP6S-0011-R9a-SM-G8LMO 40-49 years, male 114.5
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 111.4
GTEX-1PPGY-0011-R9a-SM-G8LMR 60-69 years, male 111.2
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 109.4
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 109.0
GTEX-1LKK1-0011-R9a-SM-G8OLY 50-59 years, female 108.7
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 108.6
GTEX-1MCQQ-0011-R9b-SM-G8OKM 60-69 years, male 107.7
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 107.4
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 107.2
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 106.7
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 106.0
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 105.5
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 105.3
GTEX-WVLH-0011-R9A-SM-H7OHH 50-59 years, male 104.9
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 103.3
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 103.3
GTEX-1RDX4-0011-R9b-SM-G8LMG 50-59 years, female 101.9
GTEX-1PWST-0011-R9a-SM-G8OMQ 70-79 years, male 101.5
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 101.0
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 100.2
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 100.0
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 99.2
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 99.0
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 99.0
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 98.5
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 98.2
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 98.1
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 97.9
GTEX-1LH75-0011-R9b-SM-EY5Y9 50-59 years, female 97.8
GTEX-1N5O9-0011-R9a-SM-G8LLD 60-69 years, male 96.5
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 95.6
GTEX-1RAZS-0011-R9b-SM-G8OMS 50-59 years, male 95.4
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 94.8
GTEX-12WSI-0011-R9b-SM-GHWOU 50-59 years, male 94.6
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 94.5
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 94.3
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 93.5
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 93.4
GTEX-117XS-0011-R9b-SM-GHWOG 60-69 years, male 93.3
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 93.2
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 93.1
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 92.9
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 92.4
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 92.0
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 91.8
GTEX-1O9I2-0011-R9b-SM-G8OKW 50-59 years, male 91.5
GTEX-ZV68-0011-R9b-SM-GNTB9 50-59 years, female 91.3
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 91.2
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 91.0
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 90.9
GTEX-1LG7Y-0011-R9a-SM-G8LMA 50-59 years, male 90.8
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 90.3
GTEX-1J1OQ-0011-R9b-SM-GRR22 40-49 years, female 90.1
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 89.9
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 89.9
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 89.8
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 89.8
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 89.7
GTEX-1PIIG-0011-R9b-SM-G8OLU 30-39 years, male 89.4
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 89.1
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 88.8
GTEX-1A8G6-0011-R9a-SM-GOQZR 60-69 years, male 88.6
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 88.5
GTEX-1LSVX-0011-R9b-SM-G8LL2 60-69 years, male 88.3
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 88.1
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 87.7
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 87.5
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 87.2
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 86.7
GTEX-1JMQJ-0011-R9b-SM-G8OKN 50-59 years, male 86.6
GTEX-1NV8Z-0011-R9b-SM-G8OME 60-69 years, male 86.6
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 86.5
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 86.4
GTEX-1269C-0011-R9b-SM-GI4WM 60-69 years, female 86.3
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 85.5
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 85.5
GTEX-13112-0011-R9b-SM-GHWOV 50-59 years, male 85.5
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 84.9
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 84.6
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 84.4
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 84.3
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 84.3
GTEX-NPJ7-0011-R9a-SM-G8W5X 60-69 years, female 84.3
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 84.2
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 84.1
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 83.9
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 83.9
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 83.2
GTEX-11NUK-0011-R9a-SM-GI4XG 50-59 years, male 82.3
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 82.3
GTEX-1JMQL-0011-R9b-SM-G8LLH 50-59 years, female 81.9
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 81.8
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 81.6
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 81.6
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 81.5
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 81.5
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 81.3
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 81.0
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 80.9
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 80.7
GTEX-1QMI2-0011-R9a-SM-G8ON7 60-69 years, male 80.7
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 80.4
GTEX-117YW-0011-R9a-SM-GHWPQ 50-59 years, male 80.3
GTEX-ZZPT-0011-R9a-SM-GOQYS 50-59 years, male 80.3
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 80.1
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 79.6
GTEX-1IL2U-0011-R9a-SM-GPRYC 60-69 years, male 79.4
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 78.8
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 78.7
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 78.7
GTEX-11DXW-0011-R9a-SM-GHWOE 40-49 years, male 78.5
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 78.3
GTEX-1JMOU-0011-R9b-SM-EY5YI 60-69 years, female 77.9
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 77.9
GTEX-13G51-0011-R9b-SM-GHWPS 60-69 years, male 77.8
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 77.7
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 77.5
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 77.4
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 76.8
GTEX-14JFF-0011-R9b-SM-G9ERJ 60-69 years, male 76.6
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 76.6
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 76.5
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 76.0
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 76.0
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 76.0
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 75.9
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 75.5
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 75.5
GTEX-1212Z-0011-R9b-SM-GHWPM 60-69 years, male 75.3
GTEX-11ZU8-0011-R9b-SM-GHWOL 60-69 years, male 74.8
GTEX-15SHU-0011-R9a-SM-GNIOE 40-49 years, female 73.8
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 73.2
GTEX-11GSO-0011-R9b-SM-GI4VN 60-69 years, male 72.6
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 72.2
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 71.3
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 70.5
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 70.5
GTEX-111VG-0011-R9b-SM-GHWOB 60-69 years, male 70.3
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 70.2
GTEX-1JMPZ-0011-R9a-SM-G8OLH 30-39 years, male 70.1
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 69.8
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 69.3
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 69.1
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 69.0
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 68.8
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 68.5
GTEX-ZAJG-0011-R9a-SM-GNTAY 50-59 years, female 68.1
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 68.0
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 67.9
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 67.8
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 67.7
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 67.6
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 67.5
GTEX-16GPK-0011-R9a-SM-GPI9P 60-69 years, male 67.0
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 66.8
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 66.6
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 66.4
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 66.2
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 66.0
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 65.8
GTEX-12584-0011-R9b-SM-GI4WC 40-49 years, male 65.5
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 65.3
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 65.1
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 64.7
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 63.9
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 63.7
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 63.6
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 63.3
GTEX-11NV4-0011-R9a-SM-GHWPP 60-69 years, male 62.7
GTEX-13QIC-0011-R9a-SM-GI4WO 60-69 years, female 62.3
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 61.2
GTEX-12696-0011-R9a-SM-GHWPX 60-69 years, male 60.7
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 60.5
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 60.1
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 59.9
GTEX-1JN6P-0011-R9a-SM-G8LM9 60-69 years, male 59.3
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 58.2
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 56.3
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 55.9
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 50.0
GTEX-X4EP-0011-R9B-SM-4QASI 60-69 years, female 48.3
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 47.4
GTEX-15UF6-0011-R9b-SM-GOQZG 70-79 years, female 46.4
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

210.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 210.8
FF:10181-103D1 60 years, female 254.4
FF:10159-103A6 76 years, female 167.2

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

234.3
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 173.8
Samples: 4

Max nTPM: 198.6
Min nTPM: 139.0
Sample A Female 197.0
Sample B Female 160.5
Sample C Male 139.0
Sample D Male 198.6
Ventral spinal cord
nTPM: 234.3
Samples: 4

Max nTPM: 269.5
Min nTPM: 207.5
Sample A Female 269.5
Sample B Female 207.5
Sample C Male 250.8
Sample D Male 209.3

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