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BETA
  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • IMMUNE

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  • CELL LINE

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  • EVOLUTION

  • CLIP3
EVOLUTIONARY MIDBRAIN Show tissue menu
BRAIN74 EYE4 ENDOCRINE TISSUES5 RESPIRATORY SYSTEM6 PROXIMAL DIGESTIVE TRACT5 GASTROINTESTINAL TRACT11 LIVER & GALLBLADDER4 PANCREAS1 KIDNEY & URINARY BLADDER4 MALE REPRODUCTIVE SYSTEM11 BREAST & FEMALE REPRODUCTIVE SYSTEM10 MUSCLE & VASCULAR TISSUE12 CONNECTIVE & SOFT TISSUE15 SKIN4 BONE MARROW & LYMPHOID TISSUES7
Select an organ to show its tissues
AMYGDALA ANGULAR GYRUS ANNECTANT GYRUS ANTERIOR CINGULATE GYRUS BASAL GANGLIA CAUDATE NUCLEUS CAUDATE PUTAMEN CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS CINGULATE CORTEX CLAUSTRUM CORPUS CALLOSUM CUNEUS DORSAL HIPPOCAMPUS DORSAL ROOT GANGLION DORSAL SPINAL CORD ENTORHINAL CORTEX FRONTAL CORTEX
FUSIFORM GYRUS GENICULATE NUCLEUS GLOBUS PALLIDUS GYRUS RECTUS HABENULA HIPPOCAMPAL FORMATION HYPOTHALAMUS HYPOTHALAMUS, ANTERIOR HYPOTHALAMUS, POSTERIOR INFERIOR FRONTAL GYRUS INFERIOR OCCIPITAL GYRUS INFERIOR TEMPORAL GYRUS INSULAR CORTEX LATERAL THALAMIC NUCLEI MEDULLA OBLONGATA MIDBRAIN MIDDLE FRONTAL GYRUS MIDDLE TEMPORAL GYRUS MOTOR AND PREFRONTAL CORTEX
MOTOR CORTEX OCCIPITAL CORTEX OCCIPITAL GYRUS OLFACTORY BULB ORBITAL GYRUS PERIAQUEDUCTAL GRAY PONS POSTCENTRAL GYRUS POSTERIOR CINGULATE CORTEX POSTERIOR PARAHIPPOCAMPAL GYRUS POSTERIOR THALAMUS PRECENTRAL GYRUS PREFRONTAL CORTEX PREOPTIC AREA PUTAMEN RETROSPLENIAL AND CINGULATE CORTEX RETROSPLENIAL CORTEX SEPTAL AREA SEPTUM
SOMATOSENSORY CORTEX SPINAL CORD SUBICULUM SUBSTANTIA NIGRA SUPERIOR COLLICULI SUPERIOR FRONTAL GYRUS SUPERIOR PARIETAL LOBULE SUPERIOR TEMPORAL GYRUS SUPRAMARGINAL GYRUS TEMPORAL CORTEX THALAMUS VENTRAL FOREBRAIN VENTRAL HIPPOCAMPUS VENTRAL PALLIDUM VENTRAL SPINAL CORD VISUAL CORTEX WHITE MATTER
CORNEA HARDERIAN GLAND LENS RETINA
ADRENAL GLAND PARATHYROID GLAND PINEAL GLAND PITUITARY GLAND THYROID GLAND
BRONCHUS LARYNX LUNG NASOPHARYNX OLFACTORY EPITHELIUM TRACHEA
ESOPHAGUS LIP ORAL MUCOSA SALIVARY GLAND TONGUE
CECUM COLON DUODENUM ILEUM JEJUNUM RECTUM SMALL INTESTINE STOMACH STOMACH (LOWER) STOMACH (MIDDLE) STOMACH (UPPER)
GALLBLADDER LIVER LIVER (LOBE 1) LIVER (LOBE 4)
PANCREAS
KIDNEY KIDNEY (CORTEX) KIDNEY (MEDULLA) URINARY BLADDER
BULBOURETHRAL GLAND DUCTUS DEFERENS EPIDIDYMIS MALE PREPUTIAL GLAND PENIS PROSTATE PROSTATE (ANTERIOR) PROSTATE (VENTRAL) SEMINAL VESICLE TESTIS URETHRAL GLAND
BREAST CERVIX CLITORIS ENDOMETRIUM FALLOPIAN TUBE FEMALE PREPUTIAL GLAND OVARY PLACENTA UTERUS VAGINA
AORTA BLOOD VESSEL DIAPHRAGM HEART ATRIUM HEART MUSCLE HEART VALVE HEART WALL PERIPHERAL VASCULATURE SKELETAL MUSCLE SMOOTH MUSCLE SMOOTH MUSCLE (INTESTINE) SMOOTH MUSCLE (UTERUS)
ABDOMINAL ADIPOSE TISSUE ADIPOSE TISSUE BROWN ADIPOSE TISSUE DURA MATER EAR CANAL EAR CARTILAGE JOINT CARTILAGE MENINGES ORBITAL ADIPOSE TISSUE PERICARDIUM PERITONEUM PLEURA SUBCUTANEOUS ADIPOSE TISSUE SYNOVIAL TISSUE VAGUS NERVE
EYE LID SKIN SKIN (BACK) SKIN (GROIN)
APPENDIX BLOOD, PBMC BONE MARROW LYMPH NODE SPLEEN THYMUS TONSIL
HumanMacaqueMouseRatPig
Protein evolution
Brain
Evolutionary methods
MIDBRAIN - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:116.3 nTPM
HPA Brain:398.8 nTPM
GTEx:116.3 nTPM
FANTOM5:142.2 Scaled Tags Per Million
Macaque:103.1 nTPM
Mouse:402.2 nTPM
Rat:188.7 nTPM
Pig:240.2 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

398.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 234.1
2219 Male, age 76, both hemispheres 323.2
2586 Male, age 75, left hemisphere 313.2
2666 Male, age 74, left hemisphere 268.1
1827 Male, age 72, unknown 253.2
2828 Female, age 72, unknown 234.1
1833 Male, age 53, unknown 211.3
1870 Female, age 42, unknown 202.9
2411 Female, age 72, unknown 202.2
1830 Male, age 51, unknown 172.1
2019 Male, age 18, unknown 161.0
Dorsal raphe nucleus
nTPM: 241.7
2047 Male, age 72, unknown 304.7
2298 Female, age 72, unknown 268.4
2750 Male, age 76, both hemispheres 256.6
1828 Male, age 53, unknown 215.5
2016 Female, age 72, unknown 163.4
Inferior colliculus
nTPM: 199.4
2849 Male, age 72, unknown 226.0
1890 Male, age 53, unknown 197.4
1848 Female, age 42, unknown 197.2
2097 Female, age 72, unknown 176.9
Median raphe nucleus
nTPM: 398.8
2220 Male, age 76, midline 398.8
Periaquaductal grey, anterior
nTPM: 234.3
1947 Male, age 18, unknown 253.3
1795 Male, age 51, unknown 249.7
2502 Female, age 75, unknown 200.0
Periaquaductal grey, dorsal
nTPM: 210.3
2850 Male, age 76, both hemispheres 249.0
1840 Male, age 53, unknown 223.3
1831 Male, age 72, unknown 202.8
2464 Female, age 72, unknown 166.2
Periaquaductal grey, lateral
nTPM: 171.9
2053 Male, age 18, unknown 185.9
2140 Male, age 76, both hemispheres 184.6
2272 Male, age 74, both hemispheres 145.0
Pretectal area
nTPM: 230.8
1816 Male, age 51, unknown 295.7
1944 Female, age 72, unknown 263.8
2667 Female, age 75, unknown 259.3
1815 Male, age 53, unknown 258.0
2007 Male, age 72, unknown 254.1
1817 Female, age 42, unknown 243.7
2407 Male, age 75, both hemispheres 229.3
2825 Male, age 18, unknown 218.5
2224 Female, age 72, unknown 216.6
2316 Male, age 76, right hemisphere 151.0
2273 Male, age 74, both hemispheres 148.6
Red nucleus
nTPM: 177.8
2584 Male, age 75, left hemisphere 244.3
2725 Female, age 75, unknown 193.6
1821 Female, age 72, unknown 186.0
2785 Male, age 18, unknown 179.2
2823 Male, age 76, right hemisphere 173.1
1954 Female, age 42, unknown 168.9
1865 Male, age 51, unknown 168.6
1904 Male, age 53, unknown 167.1
2588 Male, age 74, left hemisphere 165.0
2503 Female, age 72, unknown 163.2
2769 Male, age 72, unknown 163.1
2227 Male, age 72, unknown 161.1
Substantia nigra
nTPM: 295.4
1916 Female, age 42, unknown 460.9
1851 Male, age 51, unknown 343.8
2699 Male, age 18, unknown 330.1
1941 Male, age 53, unknown 294.3
2665 Male, age 74, both hemispheres 283.7
2241 Male, age 72, unknown 283.3
1889 Female, age 72, unknown 276.3
2583 Male, age 75, right hemisphere 251.0
2409 Female, age 72, unknown 224.4
2590 Female, age 75, unknown 206.4
Superior colliculus
nTPM: 219.7
2668 Female, age 75, unknown 278.9
1796 Male, age 53, unknown 277.2
2664 Male, age 75, both hemispheres 269.8
2087 Female, age 72, unknown 234.2
2261 Male, age 18, unknown 229.9
1895 Male, age 76, right hemisphere 201.6
1839 Male, age 51, unknown 191.5
2587 Male, age 74, left hemisphere 185.2
1913 Female, age 42, unknown 183.0
1995 Male, age 72, unknown 146.0
Ventral tegmental area
nTPM: 270.3
2218 Male, age 76, both hemispheres 344.2
1915 Female, age 42, unknown 315.1
2410 Female, age 72, unknown 264.4
1942 Male, age 51, unknown 249.0
2223 Female, age 72, unknown 240.2
2021 Male, age 53, unknown 208.9

MIDBRAIN - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

116.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 116.3
Samples: 183

Max nTPM: 333.4
Min nTPM: 31.9
Std nTPM: 54.5
Median nTPM: 98.4
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 333.4
GTEX-117XS-0011-R2b-SM-GI4VT 60-69 years, male 295.9
GTEX-13OW7-0011-R2b-SM-H6Q8E 50-59 years, male 260.9
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 256.4
GTEX-1PPGY-0011-R2b-SM-F33YW 60-69 years, male 256.0
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 254.0
GTEX-11NUK-0011-R2a-SM-GINAO 50-59 years, male 243.9
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 241.6
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 237.9
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 235.0
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 233.8
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 224.7
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 221.5
GTEX-1PIIG-0011-R2b-SM-F648W 30-39 years, male 213.9
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 212.2
GTEX-WVLH-0011-R2A-SM-3MJFJ 50-59 years, male 204.1
GTEX-1EKGG-0011-R2a-SM-CE6R8 60-69 years, male 200.6
GTEX-15CHQ-0011-R2b-SM-6AJAD 60-69 years, male 194.5
GTEX-11GSP-0011-R2b-SM-9QEGE 60-69 years, female 190.5
GTEX-1N2EF-0011-R2b-SM-F6482 60-69 years, male 183.7
GTEX-1MJK2-0011-R2b-SM-EXUS5 50-59 years, male 182.3
GTEX-15DYW-0011-R2b-SM-7KUKY 60-69 years, female 181.9
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 180.3
GTEX-13SLX-0011-R2b-SM-5S2VP 50-59 years, female 177.1
GTEX-111FC-0011-R2a-SM-GIN8S 60-69 years, male 177.0
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 177.0
GTEX-1IKJJ-0011-R2b-SM-ARZLJ 60-69 years, male 173.2
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 171.6
GTEX-1E1VI-0011-R2a-SM-9QEGS 50-59 years, male 171.4
GTEX-1KD4Q-0011-R2a-SM-F649I 40-49 years, male 170.3
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 168.2
GTEX-WHSE-0011-R2A-SM-3P5ZL 20-29 years, male 167.2
GTEX-13G51-0011-R2b-SM-5LZXS 60-69 years, male 164.4
GTEX-1CB4G-0011-R2a-SM-9QEGQ 60-69 years, male 161.5
GTEX-RU72-0011-R2A-SM-2TF6O 50-59 years, female 156.5
GTEX-1QMI2-0011-R2b-SM-F648R 60-69 years, male 156.4
GTEX-14BIN-0011-R2a-SM-5S2RJ 50-59 years, female 155.5
GTEX-WL46-0011-R2A-SM-3LK6O 50-59 years, male 155.1
GTEX-13OVL-0011-R2b-SM-H65ZN 50-59 years, male 154.4
GTEX-13N2G-0011-R2a-SM-5MR4Q 60-69 years, male 149.4
GTEX-QVJO-0011-R2A-SM-2S1QK 60-69 years, female 148.9
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 147.6
GTEX-1RQED-0011-R2a-SM-F3K5T 60-69 years, male 147.4
GTEX-13O3O-0011-R2b-SM-5P9H1 60-69 years, female 146.6
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 146.4
GTEX-1A3MX-0011-R2b-SM-7EWFL 60-69 years, male 145.9
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 144.3
GTEX-13OW8-0011-R2a-SM-5L3G2 60-69 years, male 144.1
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 143.8
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 140.6
GTEX-14C5O-0011-R2a-SM-5ZZV2 60-69 years, male 139.1
GTEX-13FXS-0011-R2b-SM-5K7XX 50-59 years, male 137.3
GTEX-145LS-0011-R2a-SM-5PNZI 60-69 years, female 137.3
GTEX-1F6I4-0011-R2a-SM-CL536 60-69 years, male 136.9
GTEX-1N2EE-0011-R2a-SM-F649F 60-69 years, male 135.8
GTEX-1LSNL-0011-R2a-SM-EZ6MK 50-59 years, male 134.4
GTEX-147GR-0011-R2b-SM-5S2RQ 60-69 years, male 131.3
GTEX-X585-0011-R2B-SM-46MVF 50-59 years, male 131.1
GTEX-13RTJ-0011-R2a-SM-5PNW9 60-69 years, male 130.9
GTEX-1F6IF-0011-R2b-SM-9QEHB 60-69 years, male 125.2
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 122.8
GTEX-XLM4-0011-R2B-SM-4AT5Z 60-69 years, male 122.8
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 121.8
GTEX-S7SE-0011-R2A-SM-2XCDC 50-59 years, male 121.6
GTEX-1HFI6-0011-R2a-SM-CMKH5 40-49 years, male 121.4
GTEX-15SHU-0011-R2a-SM-GPRXS 40-49 years, female 121.1
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 120.5
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 117.2
GTEX-T6MN-0011-R2A-SM-32QOW 50-59 years, male 115.3
GTEX-14JG1-0011-R2a-SM-5ZZVE 40-49 years, male 114.4
GTEX-17EVP-0011-R2a-SM-7LG4W 40-49 years, male 114.1
GTEX-11GSO-0011-R2a-SM-57WDF 60-69 years, male 113.0
GTEX-1LKK1-0011-R2b-SM-G8OLT 50-59 years, female 112.5
GTEX-1JMQJ-0011-R2a-SM-F6493 50-59 years, male 112.1
GTEX-16Z82-0011-R2b-SM-79OK9 60-69 years, male 111.7
GTEX-ZAK1-0011-R2a-SM-GPRX1 50-59 years, female 111.1
GTEX-1RQEC-0011-R2b-SM-EY5ZT 60-69 years, male 110.6
GTEX-1445S-0011-R2b-SM-5PNUH 60-69 years, male 110.3
GTEX-1HBPH-0011-R2a-SM-GQ1DS 40-49 years, female 110.0
GTEX-1GMR8-0011-R2a-SM-CE6RD 50-59 years, female 109.8
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 109.8
GTEX-1R9PO-0011-R2a-SM-F2TBH 60-69 years, female 109.6
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 108.0
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 107.4
GTEX-1EU9M-0011-R2b-SM-9QEH7 60-69 years, male 106.7
GTEX-1R9K4-0011-R2b-SM-G8LLF 60-69 years, male 104.7
GTEX-1MCQQ-0011-R2a-SM-F649V 60-69 years, male 103.4
GTEX-14PN4-0011-R2a-SM-6EU2Y 50-59 years, male 103.1
GTEX-15RJE-0011-R2b-SM-79OMP 40-49 years, male 101.1
GTEX-13QJC-0011-R2b-SM-5PNUN 60-69 years, female 100.9
GTEX-14ASI-0011-R2b-SM-5YY9H 60-69 years, male 99.6
GTEX-1IDJH-0011-R2a-SM-GPI9D 70-79 years, male 98.4
GTEX-12WSF-0011-R2a-SM-5DUVU 70-79 years, male 97.7
GTEX-1NV8Z-0011-R2b-SM-F648N 60-69 years, male 96.8
GTEX-1I1GV-0011-R2a-SM-ARZLF 60-69 years, male 96.2
GTEX-15DCD-0011-R2b-SM-6LPIE 70-79 years, female 95.2
GTEX-1JN1M-0011-R2b-SM-G9EPE 60-69 years, female 94.6
GTEX-1B996-0011-R2a-SM-7IGON 60-69 years, male 94.4
GTEX-1I1CD-0011-R2a-SM-CM2T3 60-69 years, female 94.2
GTEX-1B8SG-0011-R2b-SM-79OOT 50-59 years, male 94.0
GTEX-1POEN-0011-R2b-SM-G8LLP 30-39 years, female 94.0
GTEX-1JJ6O-0011-R2a-SM-EY5ZO 60-69 years, male 92.7
GTEX-11PRG-0011-R2a-SM-69LQ5 50-59 years, male 92.6
GTEX-1O9I2-0011-R2b-SM-F3K53 50-59 years, male 92.5
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 92.0
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 91.6
GTEX-1NV5F-0011-R2a-SM-G8LME 60-69 years, female 91.6
GTEX-1JMPZ-0011-R2a-SM-G8LLS 30-39 years, male 91.0
GTEX-XMD1-0011-R2B-SM-4AT5N 60-69 years, male 90.3
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 89.9
GTEX-11WQC-0011-R2a-SM-DO927 60-69 years, male 89.6
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 89.5
GTEX-ZZPT-0011-R2a-SM-GNTB1 50-59 years, male 88.8
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 88.6
GTEX-1HR98-0011-R2a-SM-ARL7A 60-69 years, male 88.5
GTEX-T2IS-0011-R2A-SM-32QPF 20-29 years, female 88.1
GTEX-17HG3-0011-R2a-SM-7MGVX 30-39 years, female 86.2
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 86.2
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 85.9
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 85.7
GTEX-131XH-0011-R2b-SM-5DUVY 50-59 years, male 85.6
GTEX-13X6I-0011-R2b-SM-5PNWQ 60-69 years, male 84.9
GTEX-1LSVX-0011-R2a-SM-G8OL9 60-69 years, male 84.6
GTEX-YFC4-0011-R2a-SM-4V6DZ 40-49 years, female 84.3
GTEX-1192X-0011-R2b-SM-GI4VV 50-59 years, male 83.6
GTEX-1H3O1-0011-R2b-SM-CKZOT 60-69 years, male 83.5
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 83.5
GTEX-14PJO-0011-R2a-SM-5ZZVF 60-69 years, male 81.4
GTEX-1RDX4-0011-R2b-SM-F649Z 50-59 years, female 81.2
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 80.5
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 79.9
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 79.3
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 79.2
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 77.9
GTEX-11ZTS-0011-R2b-SM-5BC75 60-69 years, female 77.8
GTEX-1I19N-0011-R2b-SM-GPRYG 70-79 years, male 77.1
GTEX-1LG7Y-0011-R2b-SM-G8LMM 50-59 years, male 76.5
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 76.1
GTEX-1KD5A-0011-R2b-SM-G9EPP 50-59 years, male 75.1
GTEX-1F48J-0011-R2a-SM-CL535 50-59 years, female 74.8
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 74.6
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 73.9
GTEX-1117F-0011-R2b-SM-GI4VL 60-69 years, female 73.5
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 73.3
GTEX-1KWVE-0011-R2a-SM-G8OLX 30-39 years, male 73.0
GTEX-ZAJG-0011-R2a-SM-GNTAX 50-59 years, female 72.4
GTEX-13CF2-0011-R2a-SM-5L3DC 60-69 years, male 72.3
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 71.9
GTEX-11TTK-0011-R2b-SM-GJ3PU 60-69 years, female 71.6
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 70.4
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 70.3
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 69.9
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 69.7
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 69.3
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 69.2
GTEX-1P4AB-0011-R2a-SM-F649K 50-59 years, male 68.7
GTEX-11EMC-0011-R2b-SM-DO114 60-69 years, female 68.6
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 68.2
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 67.2
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 67.1
GTEX-1PWST-0011-R2b-SM-F3K5I 70-79 years, male 65.7
GTEX-ZYY3-0011-R2a-SM-GNTB2 60-69 years, female 65.4
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 64.2
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 63.7
GTEX-1IL2U-0011-R2a-SM-ARU6V 60-69 years, male 62.0
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 61.4
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 61.3
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 60.6
GTEX-16GPK-0011-R2a-SM-GRR1F 60-69 years, male 60.2
GTEX-11UD1-0011-R2b-SM-5BC6O 40-49 years, female 60.1
GTEX-RN5K-0011-R2A-SM-GQ1CA 50-59 years, female 59.6
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 58.5
GTEX-X4EP-0011-R2B-SM-3P625 60-69 years, female 57.9
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 57.3
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 57.3
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 56.2
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 52.6
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 50.2
GTEX-15G19-0011-R2b-SM-H6Q7S 60-69 years, male 48.6
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 47.6
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 47.0
GTEX-12696-0011-R2b-SM-GHWPY 60-69 years, male 43.7
GTEX-1CB4J-0011-R2a-SM-9WG5N 60-69 years, male 31.9
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MIDBRAIN - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

142.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 142.2
FF:10158-103A5 76 years, female 142.2

MIDBRAIN - Macaque RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

103.1
Macaque sample Sample description nTPM
Substantia nigra
nTPM: 80.2
Samples: 1

Max nTPM: 80.2
Min nTPM: 80.2
Sample A 80.2
Midbrain
nTPM: 79.3
Samples: 1

Max nTPM: 79.3
Min nTPM: 79.3
Sample A 79.3
Superior colliculi
nTPM: 103.1
Samples: 1

Max nTPM: 103.1
Min nTPM: 103.1
Sample A 103.1

MIDBRAIN - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

240.2
Pig sample Sample description nTPM
Substantia nigra
nTPM: 240.2
Samples: 3

Max nTPM: 303.3
Min nTPM: 152.9
Sample A Female 264.5
Sample B Female 152.9
Sample C Male 303.3
Midbrain
nTPM: 221.9
Samples: 3

Max nTPM: 276.2
Min nTPM: 188.4
Sample B Female 188.4
Sample C Male 276.2
Sample D Male 201.1
Periaqueductal gray
nTPM: 182.9
Samples: 3

Max nTPM: 219.4
Min nTPM: 155.7
Sample B Female 173.6
Sample C Male 219.4
Sample D Male 155.7
Superior colliculi
nTPM: 200.4
Samples: 4

Max nTPM: 250.3
Min nTPM: 91.4
Sample A Female 217.4
Sample B Female 91.4
Sample C Male 250.3
Sample D Male 242.4

MIDBRAIN - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

402.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 402.3
Samples: 4

Max nTPM: 428.3
Min nTPM: 360.7
Sample A 360.7
Sample B 415.0
Sample C 428.3
Sample D 405.0

MIDBRAIN - Rat RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

188.7
Rat sample Sample description nTPM
Midbrain
nTPM: 188.7
Samples: 4

Max nTPM: 197.9
Min nTPM: 177.4
Sample A 197.9
Sample A 190.6
Sample A 177.4
Sample A 188.8

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